RNA–Protein interactions for RNA: YKL054C

DEF1, Transcript of RNAPII degradation factor, yeastyeast

Gene DEF1, Length 2,217 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DEF1YKL054C DRE2P36152 348 aa5.09□□□□□ -1.59
DEF1YKL054C ECM33P38248 429 aaKnown RBP5.09□□□□□ -1.59
DEF1YKL054C MED8P38304 223 aa5.09□□□□□ -1.59
DEF1YKL054C YHR127WP38833 243 aaKnown RBP5.09□□□□□ -1.59
DEF1YKL054C CYC2P38909 366 aa5.09□□□□□ -1.59
DEF1YKL054C MIM1Q08176 113 aa5.09□□□□□ -1.59
DEF1YKL054C YLR050CQ12155 161 aaKnown RBP5.09□□□□□ -1.59
DEF1YKL054C SFM1Q12314 213 aa5.09□□□□□ -1.59
DEF1YKL054C RPS14AP06367 137 aaKnown RBP5.08□□□□□ -1.6
DEF1YKL054C PET54P10834 293 aa5.08□□□□□ -1.6
DEF1YKL054C MBA1P38300 278 aa5.08□□□□□ -1.6
DEF1YKL054C RPS14BP39516 138 aaKnown RBP5.08□□□□□ -1.6
DEF1YKL054C HEM14P40012 539 aa5.08□□□□□ -1.6
DEF1YKL054C YGL204CP53089 101 aa5.08□□□□□ -1.6
DEF1YKL054C RHO3Q00245 231 aaKnown RBP5.08□□□□□ -1.6
DEF1YKL054C PET191Q02772 108 aa5.08□□□□□ -1.6
DEF1YKL054C PIR3Q03180 325 aa5.08□□□□□ -1.6
DEF1YKL054C KTI12P34253 313 aaKnown RBP5.08□□□□□ -1.6
DEF1YKL054C ARC40P38328 384 aaKnown RBP5.08□□□□□ -1.6
DEF1YKL054C MTC6P38849 526 aa5.08□□□□□ -1.6
DEF1YKL054C YFH7P43591 353 aa5.08□□□□□ -1.6
DEF1YKL054C YML018CQ03730 393 aa5.08□□□□□ -1.6
DEF1YKL054C SPG4Q04438 115 aa5.08□□□□□ -1.6
DEF1YKL054C GAS2Q06135 555 aa5.08□□□□□ -1.6
DEF1YKL054C PCL9Q12477 304 aa5.08□□□□□ -1.6
DEF1YKL054C RPS28BP0C0X0 67 aaKnown RBP5.07□□□□□ -1.6
DEF1YKL054C UPS2P35200 230 aa5.07□□□□□ -1.6
DEF1YKL054C HOT13P36078 116 aa5.07□□□□□ -1.6
DEF1YKL054C CHS7P38843 316 aa5.07□□□□□ -1.6
DEF1YKL054C FMP32P43557 207 aa5.07□□□□□ -1.6
DEF1YKL054C LCB3P47013 409 aa5.07□□□□□ -1.6
DEF1YKL054C YPR127WQ06494 345 aa5.07□□□□□ -1.6
DEF1YKL054C RPS28AQ3E7X9 67 aaPredicted RBP5.07□□□□□ -1.6
DEF1YKL054C RPN13O13563 156 aa5.07□□□□□ -1.6
DEF1YKL054C MRS1P07266 363 aa5.07□□□□□ -1.6
DEF1YKL054C YKR104WP0CE69 306 aa5.07□□□□□ -1.6
DEF1YKL054C RPL4AP10664 362 aaKnown RBP5.07□□□□□ -1.6
DEF1YKL054C MIR1P23641 311 aaKnown RBP5.07□□□□□ -1.6
DEF1YKL054C MGT1P26188 188 aa5.07□□□□□ -1.6
DEF1YKL054C RRP3P38712 501 aaKnown RBP5.07□□□□□ -1.6
DEF1YKL054C PEX22P39718 180 aa5.07□□□□□ -1.6
DEF1YKL054C OXA1P39952 402 aa5.07□□□□□ -1.6
DEF1YKL054C PAN6P40459 309 aa5.07□□□□□ -1.6
DEF1YKL054C OST1P41543 476 aaKnown RBP5.07□□□□□ -1.6
DEF1YKL054C COS4P43542 379 aa5.07□□□□□ -1.6
DEF1YKL054C RPL4BP49626 362 aaKnown RBP5.07□□□□□ -1.6
DEF1YKL054C RCF2P53721 224 aa5.07□□□□□ -1.6
DEF1YKL054C COG5P53951 403 aa5.07□□□□□ -1.6
DEF1YKL054C YPR091CQ06833 770 aa5.07□□□□□ -1.6
DEF1YKL054C YHC1Q05900 231 aaKnown RBP5.06□□□□□ -1.6
DEF1YKL054C CDC28P00546 298 aaKnown RBP5.05□□□□□ -1.6
DEF1YKL054C CYC3P06182 269 aa5.05□□□□□ -1.6
DEF1YKL054C RPL42AP0CX27 106 aaKnown RBP5.05□□□□□ -1.6
DEF1YKL054C RPL42BP0CX28 106 aaKnown RBP5.05□□□□□ -1.6
DEF1YKL054C ERD2P18414 219 aa5.05□□□□□ -1.6
DEF1YKL054C TAH1P25638 111 aaPredicted RBP5.05□□□□□ -1.6
DEF1YKL054C YHL049CP38722 271 aa5.05□□□□□ -1.6
DEF1YKL054C COX14P39103 70 aa5.05□□□□□ -1.6
DEF1YKL054C YJR111CP47148 283 aaKnown RBP5.05□□□□□ -1.6
DEF1YKL054C COS6P53344 381 aa5.05□□□□□ -1.6
DEF1YKL054C OSW1Q08692 278 aa5.05□□□□□ -1.6
DEF1YKL054C PIS1P06197 220 aaKnown RBP5.05□□□□□ -1.6
DEF1YKL054C OAC1P32332 324 aa5.05□□□□□ -1.6
DEF1YKL054C HEK2P38199 381 aaKnown RBP RIP-Chip data5.05□□□□□ -1.6 RIP-Chip
DEF1YKL054C BDH1P39714 382 aa5.05□□□□□ -1.6
DEF1YKL054C UBC12P52491 188 aa5.05□□□□□ -1.6
DEF1YKL054C RSC9Q03124 581 aa5.05□□□□□ -1.6
DEF1YKL054C RPS18AP0CX55 146 aaKnown RBP5.04□□□□□ -1.6
DEF1YKL054C RPS18BP0CX56 146 aaPredicted RBP5.04□□□□□ -1.6
DEF1YKL054C GCN3P14741 305 aa5.04□□□□□ -1.6
DEF1YKL054C MDM10P18409 493 aa5.04□□□□□ -1.6
DEF1YKL054C MRPL20P22354 195 aaPredicted RBP5.04□□□□□ -1.6
DEF1YKL054C MOB2P43563 287 aa5.04□□□□□ -1.6
DEF1YKL054C YNL046WP53956 172 aa5.04□□□□□ -1.6
DEF1YKL054C COX5AP00424 153 aa5.04□□□□□ -1.6
DEF1YKL054C SEC4P07560 215 aaKnown RBP5.04□□□□□ -1.6
DEF1YKL054C YGL082WP53155 381 aa5.04□□□□□ -1.6
DEF1YKL054C TIM44Q01852 431 aa5.04□□□□□ -1.6
DEF1YKL054C DTD1Q07648 150 aaKnown RBP5.04□□□□□ -1.6
DEF1YKL054C EFG1Q3E705 233 aaKnown RBP5.04□□□□□ -1.6
DEF1YKL054C YHR139C-AO13536 103 aa5.03□□□□□ -1.6
DEF1YKL054C PHO2P07269 559 aa5.03□□□□□ -1.6
DEF1YKL054C MRS3P10566 314 aa5.03□□□□□ -1.6
DEF1YKL054C URE2P23202 354 aaKnown RBP5.03□□□□□ -1.6
DEF1YKL054C YCR023CP25351 611 aa5.03□□□□□ -1.6
DEF1YKL054C MRP21P38175 177 aa5.03□□□□□ -1.6
DEF1YKL054C SHE3P38272 425 aaKnown RBP5.03□□□□□ -1.6
DEF1YKL054C BXI1P48558 297 aa5.03□□□□□ -1.6
DEF1YKL054C YGL039WP53183 348 aaKnown RBP5.03□□□□□ -1.6
DEF1YKL054C IDP3P53982 420 aaKnown RBP5.03□□□□□ -1.6
DEF1YKL054C YOL024WQ08172 172 aa5.03□□□□□ -1.6
DEF1YKL054C HRT3Q12347 344 aa5.03□□□□□ -1.6
DEF1YKL054C YER190C-BP0CX94 160 aa5.03□□□□□ -1.6
DEF1YKL054C YEL077W-AP0CX95 160 aa5.03□□□□□ -1.6
DEF1YKL054C YGR296C-BP0CX96 160 aa5.03□□□□□ -1.6
DEF1YKL054C YPL283W-BP0CX97 160 aa5.03□□□□□ -1.6
DEF1YKL054C YPR204C-AP0CX98 160 aa5.03□□□□□ -1.6
DEF1YKL054C VMA22P38784 181 aa5.03□□□□□ -1.6
DEF1YKL054C CFD1P40558 293 aa5.03□□□□□ -1.6
DEF1YKL054C AZF1P41696 914 aa5.03□□□□□ -1.6
Retrieved 100 of 5,963 RNA–protein pairs in 80.3 ms