RNA–Protein interactions for RNA: YER100W

UBC6, Transcript of Ubiquitin-conjugating enzyme involved in ERAD, yeast

Gene UBC6, Length 753 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBC6	YER100W	FRT2	P39734	528 aa		4.11	□□□□□ -1.75
UBC6	YER100W	FMP48	P53233	369 aa		4.11	□□□□□ -1.75
UBC6	YER100W	RPL21A	Q02753	160 aa	Known RBP	4.11	□□□□□ -1.75
UBC6	YER100W	YPL113C	Q02961	396 aa		4.11	□□□□□ -1.75
UBC6	YER100W	LIP2	Q06005	328 aa		4.11	□□□□□ -1.75
UBC6	YER100W	YDL144C	Q07589	356 aa		4.11	□□□□□ -1.75
UBC6	YER100W	YRA1	Q12159	226 aa	Known RBP	4.11	□□□□□ -1.75
UBC6	YER100W	OSM1	P21375	501 aa	Known RBP	4.1	□□□□□ -1.75
UBC6	YER100W	CDC10	P25342	322 aa	Known RBP	4.1	□□□□□ -1.75
UBC6	YER100W	SPS19	P32573	292 aa	Known RBP	4.1	□□□□□ -1.75
UBC6	YER100W	SWD3	P38123	315 aa		4.1	□□□□□ -1.75
UBC6	YER100W	IKI1	P38874	309 aa		4.1	□□□□□ -1.75
UBC6	YER100W	AVT7	P40501	490 aa		4.1	□□□□□ -1.75
UBC6	YER100W	MCM22	P47167	239 aa		4.1	□□□□□ -1.75
UBC6	YER100W	PRP24	P49960	444 aa	Known RBP	4.1	□□□□□ -1.75
UBC6	YER100W	API2	Q04413	109 aa		4.1	□□□□□ -1.75
UBC6	YER100W	YDR157W	A0A023PZE8	133 aa		4.09	□□□□□ -1.75
UBC6	YER100W	YKR104W	P0CE69	306 aa		4.09	□□□□□ -1.75
UBC6	YER100W	KSS1	P14681	368 aa		4.09	□□□□□ -1.75
UBC6	YER100W	YCR025C	P25352	136 aa		4.09	□□□□□ -1.75
UBC6	YER100W	GDH2	P33327	1092 aa	Known RBP	4.09	□□□□□ -1.75
UBC6	YER100W	HEK2	P38199	381 aa	Known RBP RIP-Chip data	4.09	□□□□□ -1.75	not detected
UBC6	YER100W	GPI18	P38211	433 aa		4.09	□□□□□ -1.75
UBC6	YER100W	YHR127W	P38833	243 aa	Known RBP	4.09	□□□□□ -1.75
UBC6	YER100W	GET1	P53192	235 aa		4.09	□□□□□ -1.75
UBC6	YER100W	SLX9	P53251	210 aa	Predicted RBP	4.09	□□□□□ -1.75
UBC6	YER100W	SPG4	Q04438	115 aa		4.09	□□□□□ -1.75
UBC6	YER100W	YDR222W	Q04925	415 aa		4.09	□□□□□ -1.75
UBC6	YER100W	ARC18	Q05933	178 aa	Known RBP	4.09	□□□□□ -1.75
UBC6	YER100W	SEI1	Q06058	285 aa		4.09	□□□□□ -1.75
UBC6	YER100W	YPL278C	Q08990	100 aa		4.09	□□□□□ -1.75
UBC6	YER100W	HTB1	P02293	131 aa	Known RBP	4.08	□□□□□ -1.76
UBC6	YER100W	HTB2	P02294	131 aa		4.08	□□□□□ -1.76
UBC6	YER100W	ADE1	P27616	306 aa		4.08	□□□□□ -1.76
UBC6	YER100W	IMP1	P28627	190 aa		4.08	□□□□□ -1.76
UBC6	YER100W	IDH1	P28834	360 aa	Known RBP RIP-Chip data	4.08	□□□□□ -1.76	not detected
UBC6	YER100W	CAT2	P32796	670 aa	Known RBP	4.08	□□□□□ -1.76
UBC6	YER100W	SGE1	P33335	543 aa		4.08	□□□□□ -1.76
UBC6	YER100W	DRE2	P36152	348 aa		4.08	□□□□□ -1.76
UBC6	YER100W	POP8	P38208	133 aa		4.08	□□□□□ -1.76
UBC6	YER100W	YHL049C	P38722	271 aa		4.08	□□□□□ -1.76
UBC6	YER100W	YJR149W	P47177	404 aa		4.08	□□□□□ -1.76
UBC6	YER100W	YGL039W	P53183	348 aa	Known RBP	4.08	□□□□□ -1.76
UBC6	YER100W	HOP2	P53187	214 aa		4.08	□□□□□ -1.76
UBC6	YER100W	FMP41	P53889	259 aa	Known RBP	4.08	□□□□□ -1.76
UBC6	YER100W	AAH1	P53909	347 aa		4.08	□□□□□ -1.76
UBC6	YER100W	RHO3	Q00245	231 aa	Known RBP	4.08	□□□□□ -1.76
UBC6	YER100W	UTP15	Q04305	513 aa	Known RBP	4.08	□□□□□ -1.76
UBC6	YER100W	PEX10	Q05568	337 aa		4.08	□□□□□ -1.76
UBC6	YER100W	TIR4	Q12218	487 aa	Predicted RBP	4.08	□□□□□ -1.76
UBC6	YER100W	JLP1	Q12358	412 aa		4.08	□□□□□ -1.76
UBC6	YER100W	YAL063C-A	Q3E791	96 aa		4.08	□□□□□ -1.76
UBC6	YER100W	YCL012C	Q8J0M4	134 aa		4.08	□□□□□ -1.76
UBC6	YER100W	COX4	P04037	155 aa		4.07	□□□□□ -1.76
UBC6	YER100W	CBF1	P17106	351 aa		4.07	□□□□□ -1.76
UBC6	YER100W	APA2	P22108	325 aa		4.07	□□□□□ -1.76
UBC6	YER100W	EPT1	P22140	391 aa		4.07	□□□□□ -1.76
UBC6	YER100W	RFA3	P26755	122 aa	Known RBP	4.07	□□□□□ -1.76
UBC6	YER100W	ATP7	P30902	174 aa		4.07	□□□□□ -1.76
UBC6	YER100W	SLX1	P38324	304 aa		4.07	□□□□□ -1.76
UBC6	YER100W	EGD2	P38879	174 aa	Known RBP	4.07	□□□□□ -1.76
UBC6	YER100W	CPR7	P47103	393 aa		4.07	□□□□□ -1.76
UBC6	YER100W	MRH4	P53166	561 aa		4.07	□□□□□ -1.76
UBC6	YER100W	SNZ2	P53824	298 aa		4.07	□□□□□ -1.76
UBC6	YER100W	INP1	Q03694	420 aa		4.07	□□□□□ -1.76
UBC6	YER100W	QCR7	P00128	127 aa		4.06	□□□□□ -1.76
UBC6	YER100W	SNA3	P14359	133 aa		4.06	□□□□□ -1.76
UBC6	YER100W	PHO80	P20052	293 aa		4.06	□□□□□ -1.76
UBC6	YER100W	ECM4	P36156	370 aa		4.06	□□□□□ -1.76
UBC6	YER100W	HMT1	P38074	348 aa		4.06	□□□□□ -1.76
UBC6	YER100W	AVT6	P40074	448 aa		4.06	□□□□□ -1.76
UBC6	YER100W	SNZ3	P43545	298 aa		4.06	□□□□□ -1.76
UBC6	YER100W	IRC18	P47056	224 aa		4.06	□□□□□ -1.76
UBC6	YER100W	ADO1	P47143	340 aa	Known RBP	4.06	□□□□□ -1.76
UBC6	YER100W	NUP57	P48837	541 aa		4.06	□□□□□ -1.76
UBC6	YER100W	NIF3	P53081	288 aa		4.06	□□□□□ -1.76
UBC6	YER100W	NOP19	P53317	196 aa	Predicted RBP	4.06	□□□□□ -1.76
UBC6	YER100W	ACT1	P60010	375 aa	Known RBP	4.06	□□□□□ -1.76
UBC6	YER100W	MRS2	Q01926	470 aa		4.06	□□□□□ -1.76
UBC6	YER100W	SMD2	Q06217	110 aa	Known RBP	4.06	□□□□□ -1.76
UBC6	YER100W	YPR147C	Q06522	304 aa	Known RBP	4.06	□□□□□ -1.76
UBC6	YER100W	TPO4	Q12256	659 aa		4.06	□□□□□ -1.76
UBC6	YER100W	YLR126C	Q12288	251 aa		4.06	□□□□□ -1.76
UBC6	YER100W	DFM1	Q12743	341 aa	Known RBP	4.06	□□□□□ -1.76
UBC6	YER100W	COS2	P0CX12	379 aa		4.05	□□□□□ -1.76
UBC6	YER100W	COS3	P0CX13	379 aa		4.05	□□□□□ -1.76
UBC6	YER100W	MRPL27	P36526	146 aa	Predicted RBP	4.05	□□□□□ -1.76
UBC6	YER100W	SMP1	P38128	452 aa		4.05	□□□□□ -1.76
UBC6	YER100W	YHB1	P39676	399 aa	Known RBP	4.05	□□□□□ -1.76
UBC6	YER100W	EDC2	P40023	145 aa	Predicted RBP	4.05	□□□□□ -1.76
UBC6	YER100W	YIL054W	P40524	105 aa		4.05	□□□□□ -1.76
UBC6	YER100W	COS4	P43542	379 aa		4.05	□□□□□ -1.76
UBC6	YER100W	BRR6	P53062	197 aa		4.05	□□□□□ -1.76
UBC6	YER100W	FYV6	P53913	173 aa		4.05	□□□□□ -1.76
UBC6	YER100W	RRP40	Q08285	240 aa	Known RBP	4.05	□□□□□ -1.76
UBC6	YER100W	CMC2	Q3E7A4	109 aa		4.05	□□□□□ -1.76
UBC6	YER100W	RAD9	P14737	1309 aa		4.04	□□□□□ -1.76
UBC6	YER100W	RPL28	P02406	149 aa	Known RBP	4.04	□□□□□ -1.76
UBC6	YER100W	ERG2	P32352	222 aa		4.04	□□□□□ -1.76
UBC6	YER100W	ZRT3	P34240	503 aa		4.04	□□□□□ -1.76

Retrieved 100 of 5,963 RNA–protein pairs in 20.5 ms