RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 HRO43593 1189 aa18.24■□□□□ 0.51
CLN3-264ENST00000637985 ITGA4P13612 1032 aa18.24■□□□□ 0.51
CLN3-264ENST00000637985 JAK3P52333 1124 aa18.24■□□□□ 0.51
CLN3-264ENST00000637985 PPM1LQ5SGD2 360 aa18.24■□□□□ 0.51
CLN3-264ENST00000637985 RIT2Q99578 217 aa18.24■□□□□ 0.51
CLN3-264ENST00000637985 PLA2G2FQ9BZM2 168 aa18.24■□□□□ 0.51
CLN3-264ENST00000637985 RNF39Q9H2S5 420 aa18.24■□□□□ 0.51
CLN3-264ENST00000637985 KCNH3Q9ULD8 1083 aa18.24■□□□□ 0.51
CLN3-264ENST00000637985 TDRD15B5MCY1 1934 aaKnown RBP18.23■□□□□ 0.51
CLN3-264ENST00000637985 MSH4O15457 936 aa18.23■□□□□ 0.51
CLN3-264ENST00000637985 CCL16O15467 120 aa18.23■□□□□ 0.51
CLN3-264ENST00000637985 C8AP07357 584 aa18.23■□□□□ 0.51
CLN3-264ENST00000637985 POU2F2P09086 479 aa18.23■□□□□ 0.51
CLN3-264ENST00000637985 MLH1P40692 756 aa18.23■□□□□ 0.51
CLN3-264ENST00000637985 SCNN1GP51170 649 aa18.23■□□□□ 0.51
CLN3-264ENST00000637985 CCR3P51677 355 aa18.23■□□□□ 0.51
CLN3-264ENST00000637985 LIN9Q5TKA1 542 aa18.23■□□□□ 0.51
CLN3-264ENST00000637985 ERICH6BQ5W0A0 696 aa18.23■□□□□ 0.51
CLN3-264ENST00000637985 SRGAP1Q7Z6B7 1085 aa18.23■□□□□ 0.51
CLN3-264ENST00000637985 DNASE1L2Q92874 299 aa18.23■□□□□ 0.51
CLN3-264ENST00000637985 ZFP42Q96MM3 310 aa18.23■□□□□ 0.51
CLN3-264ENST00000637985 CLSTN3Q9BQT9 956 aa18.23■□□□□ 0.51
CLN3-264ENST00000637985 UNC45AQ9H3U1 944 aa18.23■□□□□ 0.51
CLN3-264ENST00000637985 MINDY3Q9H8M7 445 aa18.23■□□□□ 0.51
CLN3-264ENST00000637985 ADAM28Q9UKQ2 775 aa18.23■□□□□ 0.51
CLN3-264ENST00000637985 ZMIZ1Q9ULJ6 1067 aa18.23■□□□□ 0.51
CLN3-264ENST00000637985 IPPQ9Y573 584 aa18.23■□□□□ 0.51
CLN3-264ENST00000637985 ESYT2A0FGR8 921 aa18.22■□□□□ 0.51
CLN3-264ENST00000637985 MAN2B1O00754 1011 aa18.22■□□□□ 0.51
CLN3-264ENST00000637985 PRPF3O43395 683 aaKnown RBP18.22■□□□□ 0.51
CLN3-264ENST00000637985 CHMP2AO43633 222 aa18.22■□□□□ 0.51
CLN3-264ENST00000637985 XYLBO75191 536 aa18.22■□□□□ 0.51
CLN3-264ENST00000637985 EVCP57679 992 aa18.22■□□□□ 0.51
CLN3-264ENST00000637985 RTP2Q5QGT7 225 aa18.22■□□□□ 0.51
CLN3-264ENST00000637985 PRSS55Q6UWB4 352 aaPredicted RBP18.22■□□□□ 0.51
CLN3-264ENST00000637985 CCDC12Q8WUD4 166 aaPredicted RBP18.22■□□□□ 0.51
CLN3-264ENST00000637985 NDRG2Q9UN36 371 aaKnown RBP18.22■□□□□ 0.51
CLN3-264ENST00000637985 POLIQ9UNA4 740 aa18.22■□□□□ 0.51
CLN3-264ENST00000637985 COL4A3BPQ9Y5P4 624 aa18.22■□□□□ 0.51
CLN3-264ENST00000637985 GAS7O60861 476 aa18.21■□□□□ 0.51
CLN3-264ENST00000637985 CNR2P34972 360 aa18.21■□□□□ 0.51
CLN3-264ENST00000637985 AKAP17AQ02040 695 aaKnown RBP18.21■□□□□ 0.51
CLN3-264ENST00000637985 RUFY3Q7L099 469 aa18.21■□□□□ 0.51
CLN3-264ENST00000637985 ARHGAP30Q7Z6I6 1101 aaPredicted RBP18.21■□□□□ 0.51
CLN3-264ENST00000637985 GSTCDQ8NEC7 633 aa18.21■□□□□ 0.51
CLN3-264ENST00000637985 RDM1Q8NG50 284 aa18.21■□□□□ 0.51
CLN3-264ENST00000637985 SLC5A5Q92911 643 aa18.21■□□□□ 0.51
CLN3-264ENST00000637985 ZMYND12Q9H0C1 365 aa18.21■□□□□ 0.51
CLN3-264ENST00000637985 ZSWIM6Q9HCJ5 1215 aa18.21■□□□□ 0.51
CLN3-264ENST00000637985 HCFC1R1Q9NWW0 138 aa18.21■□□□□ 0.51
CLN3-264ENST00000637985 PPP4R2Q9NY27 417 aa18.21■□□□□ 0.51
CLN3-264ENST00000637985 IGF2RP11717 2491 aa18.21■□□□□ 0.5
CLN3-264ENST00000637985 C1QTNF9BB2RNN3 333 aa18.2■□□□□ 0.5
CLN3-264ENST00000637985 EDIL3O43854 480 aa18.2■□□□□ 0.5
CLN3-264ENST00000637985 C1QTNF9P0C862 333 aa18.2■□□□□ 0.5
CLN3-264ENST00000637985 CXCL12P48061 93 aa18.2■□□□□ 0.5
CLN3-264ENST00000637985 SATB1Q01826 763 aa18.2■□□□□ 0.5
CLN3-264ENST00000637985 SRSF5Q13243 272 aaKnown RBP18.2■□□□□ 0.5
CLN3-264ENST00000637985 PABPC1LQ4VXU2 614 aaKnown RBP18.2■□□□□ 0.5
CLN3-264ENST00000637985 LRCH2Q5VUJ6 765 aa18.2■□□□□ 0.5
CLN3-264ENST00000637985 POTEHQ6S545 545 aa18.2■□□□□ 0.5
CLN3-264ENST00000637985 REXO1Q8N1G1 1221 aaKnown RBP18.2■□□□□ 0.5
CLN3-264ENST00000637985 KDF1Q8NAX2 398 aaPredicted RBP18.2■□□□□ 0.5
CLN3-264ENST00000637985 JPH2Q9BR39 696 aaPredicted RBP18.2■□□□□ 0.5
CLN3-264ENST00000637985 EIF2AQ9BY44 585 aaKnown RBP18.2■□□□□ 0.5
CLN3-264ENST00000637985 RNF26Q9BY78 433 aaPredicted RBP18.2■□□□□ 0.5
CLN3-264ENST00000637985 TM6SF1Q9BZW5 370 aa18.2■□□□□ 0.5
CLN3-264ENST00000637985 LMAN1LQ9HAT1 526 aa18.2■□□□□ 0.5
CLN3-264ENST00000637985 C6orf50Q9HD87 102 aa18.2■□□□□ 0.5
CLN3-264ENST00000637985 GDE1Q9NZC3 331 aa18.2■□□□□ 0.5
CLN3-264ENST00000637985 DNMT3BQ9UBC3 853 aaKnown RBP18.2■□□□□ 0.5
CLN3-264ENST00000637985 HES2Q9Y543 173 aa18.2■□□□□ 0.5
CLN3-264ENST00000637985 GREB1Q4ZG55 1949 aa18.19■□□□□ 0.5
CLN3-264ENST00000637985 DDX11L8A8MPP1 907 aa18.19■□□□□ 0.5
CLN3-264ENST00000637985 CHURC1-FNTBB4DL54 471 aa18.19■□□□□ 0.5
CLN3-264ENST00000637985 SRGAP2CP0DJJ0 459 aa18.19■□□□□ 0.5
CLN3-264ENST00000637985 IFNAR1P17181 557 aa18.19■□□□□ 0.5
CLN3-264ENST00000637985 GNA11P29992 359 aa18.19■□□□□ 0.5
CLN3-264ENST00000637985 PDIA3P30101 505 aaKnown RBP18.19■□□□□ 0.5
CLN3-264ENST00000637985 FNTBP49356 437 aa18.19■□□□□ 0.5
CLN3-264ENST00000637985 NTRK3Q16288 839 aa18.19■□□□□ 0.5
CLN3-264ENST00000637985 TANGO2Q6ICL3 276 aa18.19■□□□□ 0.5
CLN3-264ENST00000637985 UNQ6494/PRO21346Q6UXR6 183 aa18.19■□□□□ 0.5
CLN3-264ENST00000637985 ANO5Q75V66 913 aa18.19■□□□□ 0.5
CLN3-264ENST00000637985 MIER3Q7Z3K6 550 aa18.19■□□□□ 0.5
CLN3-264ENST00000637985 LNX1Q8TBB1 728 aaPredicted RBP18.19■□□□□ 0.5
CLN3-264ENST00000637985 PRPF31Q8WWY3 499 aaKnown RBP18.19■□□□□ 0.5
CLN3-264ENST00000637985 ING5Q8WYH8 240 aa18.19■□□□□ 0.5
CLN3-264ENST00000637985 GJA10Q969M2 543 aa18.19■□□□□ 0.5
CLN3-264ENST00000637985 ELSPBP1Q96BH3 223 aa18.19■□□□□ 0.5
CLN3-264ENST00000637985 TEKT3Q9BXF9 490 aa18.19■□□□□ 0.5
CLN3-264ENST00000637985 GIT1Q9Y2X7 761 aa18.19■□□□□ 0.5
CLN3-264ENST00000637985 CYP46A1Q9Y6A2 500 aa18.19■□□□□ 0.5
CLN3-264ENST00000637985 SDK1Q7Z5N4 2213 aa18.18■□□□□ 0.5
CLN3-264ENST00000637985 TADA2AO75478 443 aa18.18■□□□□ 0.5
CLN3-264ENST00000637985 PSMD10O75832 226 aa18.18■□□□□ 0.5
CLN3-264ENST00000637985 GAS6Q14393 721 aa18.18■□□□□ 0.5
CLN3-264ENST00000637985 UVSSAQ2YD98 709 aa18.18■□□□□ 0.5
CLN3-264ENST00000637985 AASDHQ4L235 1098 aaPredicted RBP18.18■□□□□ 0.5
CLN3-264ENST00000637985 B3GNT9Q6UX72 402 aa18.18■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms