RNA–Protein interactions for RNA: ENST00000621870.4

GGA3-223, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 1 (best)

Gene GGA3, Length 4,034 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-223ENST00000621870 TACC3Q9Y6A5 838 aa9.83□□□□□ -0.84
GGA3-223ENST00000621870 NEURL4Q96JN8 1562 aa9.83□□□□□ -0.84
GGA3-223ENST00000621870 MIF4GDA9UHW6 222 aaKnown RBP9.83□□□□□ -0.84
GGA3-223ENST00000621870 CD4P01730 458 aa9.83□□□□□ -0.84
GGA3-223ENST00000621870 KRT3P12035 628 aa9.83□□□□□ -0.84
GGA3-223ENST00000621870 SCP2P22307 547 aa9.83□□□□□ -0.84
GGA3-223ENST00000621870 OAS2P29728 719 aaKnown RBP9.83□□□□□ -0.84
GGA3-223ENST00000621870 NTRK3Q16288 839 aa9.83□□□□□ -0.84
GGA3-223ENST00000621870 EPC2Q52LR7 807 aa9.83□□□□□ -0.84
GGA3-223ENST00000621870 GKAP1Q5VSY0 366 aaPredicted RBP9.83□□□□□ -0.84
GGA3-223ENST00000621870 CCDC62Q6P9F0 684 aa9.83□□□□□ -0.84
GGA3-223ENST00000621870 TTC30BQ8N4P2 665 aa9.83□□□□□ -0.84
GGA3-223ENST00000621870 RBBP8NLQ8NC74 664 aaPredicted RBP9.83□□□□□ -0.84
GGA3-223ENST00000621870 RABGGTAQ92696 567 aa9.83□□□□□ -0.84
GGA3-223ENST00000621870 RNF14Q9UBS8 474 aa9.83□□□□□ -0.84
GGA3-223ENST00000621870 TJP2Q9UDY2 1190 aa9.83□□□□□ -0.84
GGA3-223ENST00000621870 TLK1Q9UKI8 766 aa9.83□□□□□ -0.84
GGA3-223ENST00000621870 SALL3Q9BXA9 1300 aa9.83□□□□□ -0.84
GGA3-223ENST00000621870 SRGAP2O75044 1071 aa9.83□□□□□ -0.84
GGA3-223ENST00000621870 UCHL3P15374 230 aa9.83□□□□□ -0.84
GGA3-223ENST00000621870 PDGFRAP16234 1089 aa9.83□□□□□ -0.84
GGA3-223ENST00000621870 PCSK1P29120 753 aa9.83□□□□□ -0.84
GGA3-223ENST00000621870 TPD52P55327 224 aaPredicted RBP9.83□□□□□ -0.84
GGA3-223ENST00000621870 DMTNQ08495 405 aa9.83□□□□□ -0.84
GGA3-223ENST00000621870 SEMA3FQ13275 785 aa9.83□□□□□ -0.84
GGA3-223ENST00000621870 EDRF1Q3B7T1 1238 aa9.83□□□□□ -0.84
GGA3-223ENST00000621870 CRY2Q49AN0 593 aa9.83□□□□□ -0.84
GGA3-223ENST00000621870 MCUR1Q96AQ8 359 aa9.83□□□□□ -0.84
GGA3-223ENST00000621870 SUDS3Q9H7L9 328 aaPredicted RBP9.83□□□□□ -0.84
GGA3-223ENST00000621870 SLC38A7Q9NVC3 462 aa9.83□□□□□ -0.84
GGA3-223ENST00000621870 APEX2Q9UBZ4 518 aa9.83□□□□□ -0.84
GGA3-223ENST00000621870 PACSIN2Q9UNF0 486 aaPredicted RBP9.83□□□□□ -0.84
GGA3-223ENST00000621870 SNX24Q9Y343 169 aa9.83□□□□□ -0.84
GGA3-223ENST00000621870 RP1L1Q8IWN7 2480 aaPredicted RBP9.83□□□□□ -0.84
GGA3-223ENST00000621870 A0A087WZ62 844 aa9.82□□□□□ -0.84
GGA3-223ENST00000621870 SART1O43290 800 aaKnown RBP9.82□□□□□ -0.84
GGA3-223ENST00000621870 GPC4O75487 556 aa9.82□□□□□ -0.84
GGA3-223ENST00000621870 TROVE2P10155 538 aaKnown RBP eCLIP9.82□□□□□ -0.84
GGA3-223ENST00000621870 RALAP11233 206 aa9.82□□□□□ -0.84
GGA3-223ENST00000621870 DR1Q01658 176 aa9.82□□□□□ -0.84
GGA3-223ENST00000621870 AMHR2Q16671 573 aa9.82□□□□□ -0.84
GGA3-223ENST00000621870 DAGLBQ8NCG7 672 aa9.82□□□□□ -0.84
GGA3-223ENST00000621870 FAF2Q96CS3 445 aa9.82□□□□□ -0.84
GGA3-223ENST00000621870 NUDCD1Q96RS6 583 aa9.82□□□□□ -0.84
GGA3-223ENST00000621870 SENP7Q9BQF6 1050 aa9.82□□□□□ -0.84
GGA3-223ENST00000621870 FDXACB1Q9BRP7 624 aaPredicted RBP9.82□□□□□ -0.84
GGA3-223ENST00000621870 PDGFDQ9GZP0 370 aaPredicted RBP9.82□□□□□ -0.84
GGA3-223ENST00000621870 MROH1Q8NDA8 1641 aa9.82□□□□□ -0.84
GGA3-223ENST00000621870 CLTAP09496 248 aa9.82□□□□□ -0.84
GGA3-223ENST00000621870 SOX10P56693 466 aa9.82□□□□□ -0.84
GGA3-223ENST00000621870 SMAD1Q15797 465 aaKnown RBP9.82□□□□□ -0.84
GGA3-223ENST00000621870 TRIM72Q6ZMU5 477 aa9.82□□□□□ -0.84
GGA3-223ENST00000621870 PYROXD1Q8WU10 500 aa9.82□□□□□ -0.84
GGA3-223ENST00000621870 TRAPPC12Q8WVT3 735 aa9.82□□□□□ -0.84
GGA3-223ENST00000621870 CPA5Q8WXQ8 436 aa9.82□□□□□ -0.84
GGA3-223ENST00000621870 ARHGEF2Q92974 986 aaKnown RBP9.82□□□□□ -0.84
GGA3-223ENST00000621870 HPDLQ96IR7 371 aa9.82□□□□□ -0.84
GGA3-223ENST00000621870 NT5C1AQ9BXI3 368 aa9.82□□□□□ -0.84
GGA3-223ENST00000621870 FSD1LQ9BXM9 530 aa9.82□□□□□ -0.84
GGA3-223ENST00000621870 HMX1Q9NP08 348 aaPredicted RBP9.82□□□□□ -0.84
GGA3-223ENST00000621870 XPNPEP3Q9NQH7 507 aa9.82□□□□□ -0.84
GGA3-223ENST00000621870 ABI2Q9NYB9 513 aaPredicted RBP9.82□□□□□ -0.84
GGA3-223ENST00000621870 PCDHB7Q9Y5E2 793 aa9.82□□□□□ -0.84
GGA3-223ENST00000621870 GAKO14976 1311 aa9.82□□□□□ -0.84
GGA3-223ENST00000621870 OGTO15294 1046 aa9.82□□□□□ -0.84
GGA3-223ENST00000621870 GAS2O43903 313 aaKnown RBP9.82□□□□□ -0.84
GGA3-223ENST00000621870 ITGB3P05106 788 aa9.82□□□□□ -0.84
GGA3-223ENST00000621870 KRT7P08729 469 aa9.82□□□□□ -0.84
GGA3-223ENST00000621870 TGFB3P10600 412 aa9.82□□□□□ -0.84
GGA3-223ENST00000621870 NFKBIAP25963 317 aa9.82□□□□□ -0.84
GGA3-223ENST00000621870 NPTX2P47972 431 aa9.82□□□□□ -0.84
GGA3-223ENST00000621870 CCDC144BQ3MJ40 725 aa9.82□□□□□ -0.84
GGA3-223ENST00000621870 CHADLQ6NUI6 762 aa9.82□□□□□ -0.84
GGA3-223ENST00000621870 CHP1Q99653 195 aa9.82□□□□□ -0.84
GGA3-223ENST00000621870 TBX20Q9UMR3 447 aa9.82□□□□□ -0.84
GGA3-223ENST00000621870 DEPDC5O75140 1603 aa9.81□□□□□ -0.84
GGA3-223ENST00000621870 ARHGEF28Q8N1W1 1705 aaKnown RBP9.81□□□□□ -0.84
GGA3-223ENST00000621870 PI4K2BG5E9Z4 385 aa9.81□□□□□ -0.84
GGA3-223ENST00000621870 EVI5O60447 810 aa9.81□□□□□ -0.84
GGA3-223ENST00000621870 ZC3H11AO75152 810 aaKnown RBP eCLIP9.81□□□□□ -0.84
GGA3-223ENST00000621870 GHRP10912 638 aa9.81□□□□□ -0.84
GGA3-223ENST00000621870 MSH2P43246 934 aa9.81□□□□□ -0.84
GGA3-223ENST00000621870 GRB10Q13322 594 aa9.81□□□□□ -0.84
GGA3-223ENST00000621870 PKN1Q16512 942 aa9.81□□□□□ -0.84
GGA3-223ENST00000621870 ZNF484Q5JVG2 852 aa9.81□□□□□ -0.84
GGA3-223ENST00000621870 ZC3H18Q86VM9 953 aaKnown RBP9.81□□□□□ -0.84
GGA3-223ENST00000621870 CBWD2Q8IUF1 395 aa9.81□□□□□ -0.84
GGA3-223ENST00000621870 YAF2Q8IY57 180 aa9.81□□□□□ -0.84
GGA3-223ENST00000621870 NDUFAF2Q8N183 169 aa9.81□□□□□ -0.84
GGA3-223ENST00000621870 DNERQ8NFT8 737 aa9.81□□□□□ -0.84
GGA3-223ENST00000621870 SPDYE1Q8NFV5 336 aaPredicted RBP9.81□□□□□ -0.84
GGA3-223ENST00000621870 PPP1R13LQ8WUF5 828 aa9.81□□□□□ -0.84
GGA3-223ENST00000621870 BHMTQ93088 406 aa9.81□□□□□ -0.84
GGA3-223ENST00000621870 FMO2Q99518 471 aa9.81□□□□□ -0.84
GGA3-223ENST00000621870 AGPAT3Q9NRZ7 376 aa9.81□□□□□ -0.84
GGA3-223ENST00000621870 AGPAT5Q9NUQ2 364 aa9.81□□□□□ -0.84
GGA3-223ENST00000621870 FARP1Q9Y4F1 1045 aaPredicted RBP9.81□□□□□ -0.84
GGA3-223ENST00000621870 GON4LQ3T8J9 2241 aa9.81□□□□□ -0.84
GGA3-223ENST00000621870 GOLGA8MH3BSY2 632 aa9.81□□□□□ -0.84
GGA3-223ENST00000621870 ACSL3O95573 720 aa9.81□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms