RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 NFIL3Q16649 462 aa21.51■■□□□ 1.03
UPF3A-211ENST00000618700 ZBTB41Q5SVQ8 909 aa21.51■■□□□ 1.03
UPF3A-211ENST00000618700 HERC6Q8IVU3 1022 aa21.51■■□□□ 1.03
UPF3A-211ENST00000618700 TMEM192Q8IY95 271 aa21.51■■□□□ 1.03
UPF3A-211ENST00000618700 HACE1Q8IYU2 909 aa21.51■■□□□ 1.03
UPF3A-211ENST00000618700 MLKLQ8NB16 471 aa21.51■■□□□ 1.03
UPF3A-211ENST00000618700 LPPQ93052 612 aa21.51■■□□□ 1.03
UPF3A-211ENST00000618700 DHTKD1Q96HY7 919 aaPredicted RBP21.51■■□□□ 1.03
UPF3A-211ENST00000618700 AGO2Q9UKV8 859 aaKnown RBP21.51■■□□□ 1.03
UPF3A-211ENST00000618700 PCDHB7Q9Y5E2 793 aa21.51■■□□□ 1.03
UPF3A-211ENST00000618700 LAMA2P24043 3122 aaKnown RBP21.51■■□□□ 1.03
UPF3A-211ENST00000618700 INPPL1O15357 1258 aa21.5■■□□□ 1.03
UPF3A-211ENST00000618700 CALUO43852 315 aaPredicted RBP21.5■■□□□ 1.03
UPF3A-211ENST00000618700 RECQL4O94761 1208 aa21.5■■□□□ 1.03
UPF3A-211ENST00000618700 FGFR1P11362 822 aa21.5■■□□□ 1.03
UPF3A-211ENST00000618700 IBSPP21815 317 aaPredicted RBP21.5■■□□□ 1.03
UPF3A-211ENST00000618700 CCNE1P24864 410 aa21.5■■□□□ 1.03
UPF3A-211ENST00000618700 PMS1P54277 932 aaKnown RBP21.5■■□□□ 1.03
UPF3A-211ENST00000618700 PDAP1Q13442 181 aaKnown RBP21.5■■□□□ 1.03
UPF3A-211ENST00000618700 KYAT1Q16773 422 aa21.5■■□□□ 1.03
UPF3A-211ENST00000618700 CLLU1OSQ5K130 101 aa21.5■■□□□ 1.03
UPF3A-211ENST00000618700 FAM109BQ6ICB4 259 aaPredicted RBP21.5■■□□□ 1.03
UPF3A-211ENST00000618700 SLC9A9Q8IVB4 645 aa21.5■■□□□ 1.03
UPF3A-211ENST00000618700 THNSL1Q8IYQ7 743 aa21.5■■□□□ 1.03
UPF3A-211ENST00000618700 RNF169Q8NCN4 708 aa21.5■■□□□ 1.03
UPF3A-211ENST00000618700 P2RX5Q93086 422 aa21.5■■□□□ 1.03
UPF3A-211ENST00000618700 CCDC94Q9BW85 323 aaPredicted RBP21.5■■□□□ 1.03
UPF3A-211ENST00000618700 UBN1Q9NPG3 1134 aa21.5■■□□□ 1.03
UPF3A-211ENST00000618700 DMAC2Q9NW81 257 aa21.5■■□□□ 1.03
UPF3A-211ENST00000618700 SNTG2Q9NY99 539 aa21.5■■□□□ 1.03
UPF3A-211ENST00000618700 HSPBP1Q9NZL4 362 aa21.5■■□□□ 1.03
UPF3A-211ENST00000618700 CPSF3Q9UKF6 684 aaKnown RBP21.5■■□□□ 1.03
UPF3A-211ENST00000618700 LRFN2Q9ULH4 789 aa21.5■■□□□ 1.03
UPF3A-211ENST00000618700 GIT1Q9Y2X7 761 aa21.5■■□□□ 1.03
UPF3A-211ENST00000618700 CLIC2O15247 247 aa21.49■■□□□ 1.03
UPF3A-211ENST00000618700 MEFVO15553 781 aaPredicted RBP21.49■■□□□ 1.03
UPF3A-211ENST00000618700 HOXA2O43364 376 aa21.49■■□□□ 1.03
UPF3A-211ENST00000618700 DGKIO75912 1065 aa21.49■■□□□ 1.03
UPF3A-211ENST00000618700 UPP2O95045 317 aa21.49■■□□□ 1.03
UPF3A-211ENST00000618700 LETM1O95202 739 aaPredicted RBP21.49■■□□□ 1.03
UPF3A-211ENST00000618700 AKAP5P24588 427 aa21.49■■□□□ 1.03
UPF3A-211ENST00000618700 TNFSF9P41273 254 aa21.49■■□□□ 1.03
UPF3A-211ENST00000618700 HTRA4P83105 476 aaPredicted RBP21.49■■□□□ 1.03
UPF3A-211ENST00000618700 MYBPC2Q14324 1141 aa21.49■■□□□ 1.03
UPF3A-211ENST00000618700 EDRF1Q3B7T1 1238 aa21.49■■□□□ 1.03
UPF3A-211ENST00000618700 SEZ6Q53EL9 994 aa21.49■■□□□ 1.03
UPF3A-211ENST00000618700 KLHL10Q6JEL2 608 aa21.49■■□□□ 1.03
UPF3A-211ENST00000618700 FOXR2Q6PJQ5 311 aa21.49■■□□□ 1.03
UPF3A-211ENST00000618700 SASS6Q6UVJ0 657 aa21.49■■□□□ 1.03
UPF3A-211ENST00000618700 CRELD2Q6UXH1 353 aaPredicted RBP21.49■■□□□ 1.03
UPF3A-211ENST00000618700 ZSWIM2Q8NEG5 633 aa21.49■■□□□ 1.03
UPF3A-211ENST00000618700 NELFBQ8WX92 580 aa21.49■■□□□ 1.03
UPF3A-211ENST00000618700 ZNF689Q96CS4 500 aaPredicted RBP21.49■■□□□ 1.03
UPF3A-211ENST00000618700 SAAL1Q96ER3 474 aa21.49■■□□□ 1.03
UPF3A-211ENST00000618700 FBXL18Q96ME1 805 aa21.49■■□□□ 1.03
UPF3A-211ENST00000618700 APOL6Q9BWW8 343 aa21.49■■□□□ 1.03
UPF3A-211ENST00000618700 PCIF1Q9H4Z3 704 aa21.49■■□□□ 1.03
UPF3A-211ENST00000618700 RSAD1Q9HA92 442 aa21.49■■□□□ 1.03
UPF3A-211ENST00000618700 CTNND2Q9UQB3 1225 aa21.49■■□□□ 1.03
UPF3A-211ENST00000618700 TRIOBPQ9H2D6 2365 aa21.49■■□□□ 1.03
UPF3A-211ENST00000618700 RALGAPA2Q2PPJ7 1873 aa21.48■■□□□ 1.03
UPF3A-211ENST00000618700 EXTL3O43909 919 aa21.48■■□□□ 1.03
UPF3A-211ENST00000618700 NR3C1P04150 777 aa21.48■■□□□ 1.03
UPF3A-211ENST00000618700 CLTAP09496 248 aa21.48■■□□□ 1.03
UPF3A-211ENST00000618700 OSTNP61366 133 aa21.48■■□□□ 1.03
UPF3A-211ENST00000618700 LRRC63Q05C16 580 aa21.48■■□□□ 1.03
UPF3A-211ENST00000618700 PAK1Q13153 545 aa21.48■■□□□ 1.03
UPF3A-211ENST00000618700 ANKRD40Q6AI12 368 aa21.48■■□□□ 1.03
UPF3A-211ENST00000618700 TTI2Q6NXR4 508 aa21.48■■□□□ 1.03
UPF3A-211ENST00000618700 FAM117BQ6P1L5 589 aa21.48■■□□□ 1.03
UPF3A-211ENST00000618700 ZC3H3Q8IXZ2 948 aaKnown RBP21.48■■□□□ 1.03
UPF3A-211ENST00000618700 RSPH1Q8WYR4 309 aa21.48■■□□□ 1.03
UPF3A-211ENST00000618700 SNX27Q96L92 541 aa21.48■■□□□ 1.03
UPF3A-211ENST00000618700 FNDC1Q4ZHG4 1894 aaPredicted RBP21.47■■□□□ 1.03
UPF3A-211ENST00000618700 TRIM49BA6NDI0 452 aa21.47■■□□□ 1.03
UPF3A-211ENST00000618700 OFD1O75665 1012 aa21.47■■□□□ 1.03
UPF3A-211ENST00000618700 LDHAP00338 332 aaKnown RBP21.47■■□□□ 1.03
UPF3A-211ENST00000618700 MLH1P40692 756 aa21.47■■□□□ 1.03
UPF3A-211ENST00000618700 ACOT2P49753 483 aa21.47■■□□□ 1.03
UPF3A-211ENST00000618700 GATMP50440 423 aa21.47■■□□□ 1.03
UPF3A-211ENST00000618700 FXR1P51114 621 aaKnown RBP eCLIP21.47■■□□□ 1.03
UPF3A-211ENST00000618700 CYP2J2P51589 502 aa21.47■■□□□ 1.03
UPF3A-211ENST00000618700 POU5F1Q01860 360 aaKnown RBP21.47■■□□□ 1.03
UPF3A-211ENST00000618700 TYRO3Q06418 890 aa21.47■■□□□ 1.03
UPF3A-211ENST00000618700 ENOX2Q16206 610 aaKnown RBP21.47■■□□□ 1.03
UPF3A-211ENST00000618700 STX1AQ16623 288 aa21.47■■□□□ 1.03
UPF3A-211ENST00000618700 ZSCAN23Q3MJ62 389 aa21.47■■□□□ 1.03
UPF3A-211ENST00000618700 GLB1LQ6UWU2 654 aa21.47■■□□□ 1.03
UPF3A-211ENST00000618700 GPD1LQ8N335 351 aa21.47■■□□□ 1.03
UPF3A-211ENST00000618700 XXYLT1Q8NBI6 393 aa21.47■■□□□ 1.03
UPF3A-211ENST00000618700 HELQQ8TDG4 1101 aa21.47■■□□□ 1.03
UPF3A-211ENST00000618700 ACAP3Q96P50 834 aa21.47■■□□□ 1.03
UPF3A-211ENST00000618700 CASD1Q96PB1 797 aa21.47■■□□□ 1.03
UPF3A-211ENST00000618700 FAM213AQ9BRX8 229 aa21.47■■□□□ 1.03
UPF3A-211ENST00000618700 FUCA2Q9BTY2 467 aa21.47■■□□□ 1.03
UPF3A-211ENST00000618700 TMEM117Q9H0C3 514 aa21.47■■□□□ 1.03
UPF3A-211ENST00000618700 ANO10Q9NW15 660 aa21.47■■□□□ 1.03
UPF3A-211ENST00000618700 PARP2Q9UGN5 583 aa21.47■■□□□ 1.03
UPF3A-211ENST00000618700 RWDD2AQ9UIY3 292 aa21.47■■□□□ 1.03
UPF3A-211ENST00000618700 LAMA3Q16787 3333 aa21.47■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms