RNA–Protein interactions for RNA: ENST00000589604.5

VPS4B-204, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 1,672 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-204ENST00000589604 FBXL18Q96ME1 805 aa11.4□□□□□ -0.59
VPS4B-204ENST00000589604 PCIF1Q9H4Z3 704 aa11.4□□□□□ -0.59
VPS4B-204ENST00000589604 ERVK-5Q9HDB9 667 aa11.4□□□□□ -0.59
VPS4B-204ENST00000589604 IL23AQ9NPF7 189 aa11.4□□□□□ -0.59
VPS4B-204ENST00000589604 HSPBP1Q9NZL4 362 aa11.4□□□□□ -0.59
VPS4B-204ENST00000589604 ARMCX3Q9UH62 379 aaPredicted RBP11.4□□□□□ -0.59
VPS4B-204ENST00000589604 PADI3Q9ULW8 664 aa11.4□□□□□ -0.59
VPS4B-204ENST00000589604 EXOC7Q9UPT5 735 aa11.4□□□□□ -0.59
VPS4B-204ENST00000589604 PTPRSQ13332 1948 aa11.39□□□□□ -0.59
VPS4B-204ENST00000589604 ANK1P16157 1881 aa11.39□□□□□ -0.59
VPS4B-204ENST00000589604 K7ERI5 159 aa11.39□□□□□ -0.59
VPS4B-204ENST00000589604 ASAP2O43150 1006 aa11.39□□□□□ -0.59
VPS4B-204ENST00000589604 MGEA5O60502 916 aa11.39□□□□□ -0.59
VPS4B-204ENST00000589604 GYPCP04921 128 aa11.39□□□□□ -0.59
VPS4B-204ENST00000589604 EIF4BP23588 611 aaKnown RBP11.39□□□□□ -0.59
VPS4B-204ENST00000589604 ABCD1P33897 745 aa11.39□□□□□ -0.59
VPS4B-204ENST00000589604 PSMC2P35998 433 aaKnown RBP11.39□□□□□ -0.59
VPS4B-204ENST00000589604 PTENP60484 403 aa11.39□□□□□ -0.59
VPS4B-204ENST00000589604 MBTD1Q05BQ5 628 aa11.39□□□□□ -0.59
VPS4B-204ENST00000589604 POU5F1BQ06416 359 aa11.39□□□□□ -0.59
VPS4B-204ENST00000589604 KCNMA1Q12791 1236 aa11.39□□□□□ -0.59
VPS4B-204ENST00000589604 AMHR2Q16671 573 aa11.39□□□□□ -0.59
VPS4B-204ENST00000589604 C1orf220Q5T0J3 134 aa11.39□□□□□ -0.59
VPS4B-204ENST00000589604 POTEHQ6S545 545 aa11.39□□□□□ -0.59
VPS4B-204ENST00000589604 TSHZ1Q6ZSZ6 1077 aa11.39□□□□□ -0.59
VPS4B-204ENST00000589604 ZNF365Q70YC5 407 aa11.39□□□□□ -0.59
VPS4B-204ENST00000589604 RTN4RL1Q86UN2 441 aaPredicted RBP11.39□□□□□ -0.59
VPS4B-204ENST00000589604 ZNF410Q86VK4 478 aa11.39□□□□□ -0.59
VPS4B-204ENST00000589604 FAM186BQ8IYM0 893 aa11.39□□□□□ -0.59
VPS4B-204ENST00000589604 PLEKHO2Q8TD55 490 aa11.39□□□□□ -0.59
VPS4B-204ENST00000589604 SLC35C1Q96A29 364 aa11.39□□□□□ -0.59
VPS4B-204ENST00000589604 TRIM44Q96DX7 344 aaPredicted RBP11.39□□□□□ -0.59
VPS4B-204ENST00000589604 NFKBIZQ9BYH8 718 aa11.39□□□□□ -0.59
VPS4B-204ENST00000589604 TTYH3Q9C0H2 523 aa11.39□□□□□ -0.59
VPS4B-204ENST00000589604 CXXC1Q9P0U4 656 aaPredicted RBP11.39□□□□□ -0.59
VPS4B-204ENST00000589604 ST3GAL5Q9UNP4 418 aa11.39□□□□□ -0.59
VPS4B-204ENST00000589604 PHLPP2Q6ZVD8 1323 aa11.38□□□□□ -0.59
VPS4B-204ENST00000589604 ABLIM1O14639 778 aa11.38□□□□□ -0.59
VPS4B-204ENST00000589604 MAPK13O15264 365 aa11.38□□□□□ -0.59
VPS4B-204ENST00000589604 B4GALT5O43286 388 aa11.38□□□□□ -0.59
VPS4B-204ENST00000589604 ADRB2P07550 413 aa11.38□□□□□ -0.59
VPS4B-204ENST00000589604 EPB41P11171 864 aaKnown RBP11.38□□□□□ -0.59
VPS4B-204ENST00000589604 GARTP22102 1010 aa11.38□□□□□ -0.59
VPS4B-204ENST00000589604 RFC2P35250 354 aa11.38□□□□□ -0.59
VPS4B-204ENST00000589604 MLLT3P42568 568 aaPredicted RBP11.38□□□□□ -0.59
VPS4B-204ENST00000589604 FXR1P51114 621 aaKnown RBP eCLIP11.38□□□□□ -0.59
VPS4B-204ENST00000589604 EFNA5P52803 228 aa11.38□□□□□ -0.59
VPS4B-204ENST00000589604 GSDMDP57764 484 aa11.38□□□□□ -0.59
VPS4B-204ENST00000589604 CCZ1BP86790 482 aa11.38□□□□□ -0.59
VPS4B-204ENST00000589604 CCZ1P86791 482 aaPredicted RBP11.38□□□□□ -0.59
VPS4B-204ENST00000589604 KCNH2Q12809 1159 aa11.38□□□□□ -0.59
VPS4B-204ENST00000589604 SYCP1Q15431 976 aa11.38□□□□□ -0.59
VPS4B-204ENST00000589604 OTOP2Q7RTS6 562 aa11.38□□□□□ -0.59
VPS4B-204ENST00000589604 TMEM139Q8IV31 216 aa11.38□□□□□ -0.59
VPS4B-204ENST00000589604 XXYLT1Q8NBI6 393 aa11.38□□□□□ -0.59
VPS4B-204ENST00000589604 ZBTB45Q96K62 511 aaPredicted RBP11.38□□□□□ -0.59
VPS4B-204ENST00000589604 LBHD1Q9BQE6 289 aaPredicted RBP11.38□□□□□ -0.59
VPS4B-204ENST00000589604 TARS2Q9BW92 718 aaKnown RBP11.38□□□□□ -0.59
VPS4B-204ENST00000589604 IFIH1Q9BYX4 1025 aaKnown RBP11.38□□□□□ -0.59
VPS4B-204ENST00000589604 FZD8Q9H461 694 aa11.38□□□□□ -0.59
VPS4B-204ENST00000589604 METTL14Q9HCE5 456 aaKnown RBP11.38□□□□□ -0.59
VPS4B-204ENST00000589604 ZKSCAN5Q9Y2L8 839 aa11.38□□□□□ -0.59
VPS4B-204ENST00000589604 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.38□□□□□ -0.59
VPS4B-204ENST00000589604 M0QZ92 97 aa11.37□□□□□ -0.59
VPS4B-204ENST00000589604 EXOC3O60645 756 aa11.37□□□□□ -0.59
VPS4B-204ENST00000589604 RPS6KA5O75582 802 aa11.37□□□□□ -0.59
VPS4B-204ENST00000589604 RPLP2P05387 115 aaKnown RBP11.37□□□□□ -0.59
VPS4B-204ENST00000589604 HOXA11P31270 313 aaPredicted RBP11.37□□□□□ -0.59
VPS4B-204ENST00000589604 PPIGQ13427 754 aaKnown RBP eCLIP11.37□□□□□ -0.59
VPS4B-204ENST00000589604 SHHQ15465 462 aa11.37□□□□□ -0.59
VPS4B-204ENST00000589604 TMCO2Q7Z6W1 182 aaPredicted RBP11.37□□□□□ -0.59
VPS4B-204ENST00000589604 SCLT1Q96NL6 688 aa11.37□□□□□ -0.59
VPS4B-204ENST00000589604 GCOM2Q9BZD3 368 aaPredicted RBP11.37□□□□□ -0.59
VPS4B-204ENST00000589604 PYCARDQ9ULZ3 195 aa11.37□□□□□ -0.59
VPS4B-204ENST00000589604 FRMD4BQ9Y2L6 1034 aa11.37□□□□□ -0.59
VPS4B-204ENST00000589604 SQORQ9Y6N5 450 aa11.37□□□□□ -0.59
VPS4B-204ENST00000589604 MICAL3Q7RTP6 2002 aa11.37□□□□□ -0.59
VPS4B-204ENST00000589604 TRIP11Q15643 1979 aa11.37□□□□□ -0.59
VPS4B-204ENST00000589604 A0A0B4J269 797 aa11.36□□□□□ -0.59
VPS4B-204ENST00000589604 LOC101059915A0A1B0GWI6 518 aaPredicted RBP11.36□□□□□ -0.59
VPS4B-204ENST00000589604 GOLGA8IPA6NC78 632 aa11.36□□□□□ -0.59
VPS4B-204ENST00000589604 GOLGA8JA6NMD2 632 aa11.36□□□□□ -0.59
VPS4B-204ENST00000589604 PES1O00541 588 aaKnown RBP11.36□□□□□ -0.59
VPS4B-204ENST00000589604 HNRNPDLO14979 420 aaKnown RBP11.36□□□□□ -0.59
VPS4B-204ENST00000589604 EPHB6O15197 1021 aa11.36□□□□□ -0.59
VPS4B-204ENST00000589604 NOL4O94818 638 aa11.36□□□□□ -0.59
VPS4B-204ENST00000589604 PHKA2P46019 1235 aa11.36□□□□□ -0.59
VPS4B-204ENST00000589604 ADKP55263 362 aaKnown RBP11.36□□□□□ -0.59
VPS4B-204ENST00000589604 PPP2R3AQ06190 1150 aa11.36□□□□□ -0.59
VPS4B-204ENST00000589604 NFX1Q12986 1120 aaKnown RBP11.36□□□□□ -0.59
VPS4B-204ENST00000589604 DSC3Q14574 896 aa11.36□□□□□ -0.59
VPS4B-204ENST00000589604 RASIP1Q5U651 963 aa11.36□□□□□ -0.59
VPS4B-204ENST00000589604 CRELD2Q6UXH1 353 aaPredicted RBP11.36□□□□□ -0.59
VPS4B-204ENST00000589604 CHRDL2Q6WN34 429 aa11.36□□□□□ -0.59
VPS4B-204ENST00000589604 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.36□□□□□ -0.59
VPS4B-204ENST00000589604 CBWD2Q8IUF1 395 aa11.36□□□□□ -0.59
VPS4B-204ENST00000589604 RDH13Q8NBN7 331 aa11.36□□□□□ -0.59
VPS4B-204ENST00000589604 CCDC150Q8NCX0 1101 aa11.36□□□□□ -0.59
VPS4B-204ENST00000589604 SAAL1Q96ER3 474 aa11.36□□□□□ -0.59
VPS4B-204ENST00000589604 MFSD14AQ96MC6 490 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 86.4 ms