RNA–Protein interactions for RNA: ENST00000588109.5

LIG3-210, Transcript of DNA ligase 3, humanhuman

TSL 4

Gene LIG3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-210ENST00000588109 ISM2Q6H9L7 571 aa5.87□□□□□ -1.47
LIG3-210ENST00000588109 PDE12Q6L8Q7 609 aaKnown RBP5.87□□□□□ -1.47
LIG3-210ENST00000588109 RINT1Q6NUQ1 792 aa5.87□□□□□ -1.47
LIG3-210ENST00000588109 CXCL17Q6UXB2 119 aa5.87□□□□□ -1.47
LIG3-210ENST00000588109 MAEAQ7L5Y9 396 aa5.87□□□□□ -1.47
LIG3-210ENST00000588109 CCDC65Q8IXS2 484 aa5.87□□□□□ -1.47
LIG3-210ENST00000588109 ELOA2Q8IYF1 753 aaPredicted RBP5.87□□□□□ -1.47
LIG3-210ENST00000588109 C7orf31Q8N865 590 aa5.87□□□□□ -1.47
LIG3-210ENST00000588109 ARRDC4Q8NCT1 418 aa5.87□□□□□ -1.47
LIG3-210ENST00000588109 ZNF417Q8TAU3 575 aa5.87□□□□□ -1.47
LIG3-210ENST00000588109 SLC7A3Q8WY07 619 aa5.87□□□□□ -1.47
LIG3-210ENST00000588109 DEFB118Q96PH6 123 aa5.87□□□□□ -1.47
LIG3-210ENST00000588109 ZNF587Q96SQ5 575 aaPredicted RBP5.87□□□□□ -1.47
LIG3-210ENST00000588109 C7orf25Q9BPX7 421 aa5.87□□□□□ -1.47
LIG3-210ENST00000588109 REEP2Q9BRK0 252 aa5.87□□□□□ -1.47
LIG3-210ENST00000588109 RUSC1Q9BVN2 902 aa5.87□□□□□ -1.47
LIG3-210ENST00000588109 TRIM9Q9C026 710 aa5.87□□□□□ -1.47
LIG3-210ENST00000588109 RNF208Q9H0X6 261 aa5.87□□□□□ -1.47
LIG3-210ENST00000588109 UPF3AQ9H1J1 476 aaKnown RBP5.87□□□□□ -1.47
LIG3-210ENST00000588109 RNPEPQ9H4A4 650 aa5.87□□□□□ -1.47
LIG3-210ENST00000588109 ATP6V0A4Q9HBG4 840 aa5.87□□□□□ -1.47
LIG3-210ENST00000588109 CYP26B1Q9NR63 512 aa5.87□□□□□ -1.47
LIG3-210ENST00000588109 EXOC1Q9NV70 894 aa5.87□□□□□ -1.47
LIG3-210ENST00000588109 RMND1Q9NWS8 449 aa5.87□□□□□ -1.47
LIG3-210ENST00000588109 NOP53Q9NZM5 478 aaKnown RBP5.87□□□□□ -1.47
LIG3-210ENST00000588109 KCND2Q9NZV8 630 aa5.87□□□□□ -1.47
LIG3-210ENST00000588109 PCDHA5Q9Y5H7 936 aa5.87□□□□□ -1.47
LIG3-210ENST00000588109 MYH9P35579 1960 aaKnown RBP5.87□□□□□ -1.47
LIG3-210ENST00000588109 WDR81Q562E7 1941 aa5.86□□□□□ -1.47
LIG3-210ENST00000588109 COL1A2P08123 1366 aa5.86□□□□□ -1.47
LIG3-210ENST00000588109 KBTBD13C9JR72 458 aa5.86□□□□□ -1.47
LIG3-210ENST00000588109 NDUFB5O43674 189 aa5.86□□□□□ -1.47
LIG3-210ENST00000588109 HIP1RO75146 1068 aa5.86□□□□□ -1.47
LIG3-210ENST00000588109 STBD1O95210 358 aa5.86□□□□□ -1.47
LIG3-210ENST00000588109 F2P00734 622 aa5.86□□□□□ -1.47
LIG3-210ENST00000588109 PDGFAP04085 211 aa5.86□□□□□ -1.47
LIG3-210ENST00000588109 ASGR1P07306 291 aa5.86□□□□□ -1.47
LIG3-210ENST00000588109 CCDC192P0DO97 292 aa5.86□□□□□ -1.47
LIG3-210ENST00000588109 INSRRP14616 1297 aa5.86□□□□□ -1.47
LIG3-210ENST00000588109 GUCY2CP25092 1073 aa5.86□□□□□ -1.47
LIG3-210ENST00000588109 CST5P28325 142 aaPredicted RBP5.86□□□□□ -1.47
LIG3-210ENST00000588109 PURAQ00577 322 aaKnown RBP5.86□□□□□ -1.47
LIG3-210ENST00000588109 KCNMA1Q12791 1236 aa5.86□□□□□ -1.47
LIG3-210ENST00000588109 HYAL2Q12891 473 aa5.86□□□□□ -1.47
LIG3-210ENST00000588109 GIT2Q14161 759 aa5.86□□□□□ -1.47
LIG3-210ENST00000588109 EMC2Q15006 297 aa5.86□□□□□ -1.47
LIG3-210ENST00000588109 LRRC41Q15345 812 aa5.86□□□□□ -1.47
LIG3-210ENST00000588109 TRIP4Q15650 581 aaPredicted RBP5.86□□□□□ -1.47
LIG3-210ENST00000588109 GRIK4Q16099 956 aa5.86□□□□□ -1.47
LIG3-210ENST00000588109 KCNA10Q16322 511 aa5.86□□□□□ -1.47
LIG3-210ENST00000588109 STX1AQ16623 288 aa5.86□□□□□ -1.47
LIG3-210ENST00000588109 ARSHQ5FYA8 562 aa5.86□□□□□ -1.47
LIG3-210ENST00000588109 FAM47CQ5HY64 1035 aa5.86□□□□□ -1.47
LIG3-210ENST00000588109 PSAPL1Q6NUJ1 521 aa5.86□□□□□ -1.47
LIG3-210ENST00000588109 CNNM4Q6P4Q7 775 aa5.86□□□□□ -1.47
LIG3-210ENST00000588109 HFE2Q6ZVN8 426 aa5.86□□□□□ -1.47
LIG3-210ENST00000588109 C1orf186Q6ZWK4 172 aa5.86□□□□□ -1.47
LIG3-210ENST00000588109 UNC13DQ70J99 1090 aa5.86□□□□□ -1.47
LIG3-210ENST00000588109 EXOC8Q8IYI6 725 aa5.86□□□□□ -1.47
LIG3-210ENST00000588109 TMEM151AQ8N4L1 468 aa5.86□□□□□ -1.47
LIG3-210ENST00000588109 MYCT1Q8N699 235 aa5.86□□□□□ -1.47
LIG3-210ENST00000588109 METTL13Q8N6R0 699 aa5.86□□□□□ -1.47
LIG3-210ENST00000588109 MCPH1Q8NEM0 835 aa5.86□□□□□ -1.47
LIG3-210ENST00000588109 KLHDC9Q8NEP7 349 aa5.86□□□□□ -1.47
LIG3-210ENST00000588109 NUDT8Q8WV74 236 aa5.86□□□□□ -1.47
LIG3-210ENST00000588109 TRAPPC12Q8WVT3 735 aa5.86□□□□□ -1.47
LIG3-210ENST00000588109 PMEPA1Q969W9 287 aa5.86□□□□□ -1.47
LIG3-210ENST00000588109 DRC1Q96MC2 740 aa5.86□□□□□ -1.47
LIG3-210ENST00000588109 GLT1D1Q96MS3 346 aa5.86□□□□□ -1.47
LIG3-210ENST00000588109 GSDMAQ96QA5 445 aa5.86□□□□□ -1.47
LIG3-210ENST00000588109 JPH2Q9BR39 696 aaPredicted RBP5.86□□□□□ -1.47
LIG3-210ENST00000588109 TIPINQ9BVW5 301 aa5.86□□□□□ -1.47
LIG3-210ENST00000588109 SUGCTQ9HAC7 445 aa5.86□□□□□ -1.47
LIG3-210ENST00000588109 PARVGQ9HBI0 331 aa5.86□□□□□ -1.47
LIG3-210ENST00000588109 PAK6Q9NQU5 681 aaPredicted RBP5.86□□□□□ -1.47
LIG3-210ENST00000588109 PRDM10Q9NQV6 1147 aa5.86□□□□□ -1.47
LIG3-210ENST00000588109 SETD4Q9NVD3 440 aa5.86□□□□□ -1.47
LIG3-210ENST00000588109 PANK4Q9NVE7 773 aa5.86□□□□□ -1.47
LIG3-210ENST00000588109 ABI2Q9NYB9 513 aaPredicted RBP5.86□□□□□ -1.47
LIG3-210ENST00000588109 MAN1B1Q9UKM7 699 aa5.86□□□□□ -1.47
LIG3-210ENST00000588109 ODF2LQ9ULJ1 636 aa5.86□□□□□ -1.47
LIG3-210ENST00000588109 POLIQ9UNA4 740 aa5.86□□□□□ -1.47
LIG3-210ENST00000588109 PPME1Q9Y570 386 aa5.86□□□□□ -1.47
LIG3-210ENST00000588109 COL4A3BPQ9Y5P4 624 aa5.86□□□□□ -1.47
LIG3-210ENST00000588109 CEP350Q5VT06 3117 aa5.85□□□□□ -1.47
LIG3-210ENST00000588109 ARID2Q68CP9 1835 aa5.85□□□□□ -1.47
LIG3-210ENST00000588109 NRCAMQ92823 1304 aa5.85□□□□□ -1.47
LIG3-210ENST00000588109 PVALEFA0A1B0GWK0 134 aa5.85□□□□□ -1.47
LIG3-210ENST00000588109 C17orf102A2RUQ5 167 aa5.85□□□□□ -1.47
LIG3-210ENST00000588109 RRN3P2A6NIE6 340 aa5.85□□□□□ -1.47
LIG3-210ENST00000588109 RSPH10B2B2RC85 870 aa5.85□□□□□ -1.47
LIG3-210ENST00000588109 DNM1LO00429 736 aa5.85□□□□□ -1.47
LIG3-210ENST00000588109 MAGEB2O15479 319 aa5.85□□□□□ -1.47
LIG3-210ENST00000588109 MAFO75444 373 aaPredicted RBP5.85□□□□□ -1.47
LIG3-210ENST00000588109 CABYRO75952 493 aa5.85□□□□□ -1.47
LIG3-210ENST00000588109 TFRCP02786 760 aaKnown RBP5.85□□□□□ -1.47
LIG3-210ENST00000588109 RSPH10BP0C881 870 aa5.85□□□□□ -1.47
LIG3-210ENST00000588109 SMIM10L2AP0DMW4 78 aa5.85□□□□□ -1.47
LIG3-210ENST00000588109 SMIM10L2BP0DMW5 78 aa5.85□□□□□ -1.47
LIG3-210ENST00000588109 GNAT1P11488 350 aa5.85□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms