RNA–Protein interactions for RNA: ENST00000588059.5

VPS4B-202, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 5

Gene VPS4B, Length 1,252 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-202ENST00000588059 C8AP07357 584 aa12.3□□□□□ -0.44
VPS4B-202ENST00000588059 TARSP26639 723 aaKnown RBP12.3□□□□□ -0.44
VPS4B-202ENST00000588059 HOXA9P31269 272 aa12.3□□□□□ -0.44
VPS4B-202ENST00000588059 PTENP60484 403 aa12.3□□□□□ -0.44
VPS4B-202ENST00000588059 PFKPQ01813 784 aa12.3□□□□□ -0.44
VPS4B-202ENST00000588059 GRIK3Q13003 919 aa12.3□□□□□ -0.44
VPS4B-202ENST00000588059 PCBP1Q15365 356 aaKnown RBP eCLIP12.3□□□□□ -0.44
VPS4B-202ENST00000588059 NPY5RQ15761 445 aa12.3□□□□□ -0.44
VPS4B-202ENST00000588059 AMHR2Q16671 573 aa12.3□□□□□ -0.44
VPS4B-202ENST00000588059 PPM1LQ5SGD2 360 aa12.3□□□□□ -0.44
VPS4B-202ENST00000588059 LIN9Q5TKA1 542 aa12.3□□□□□ -0.44
VPS4B-202ENST00000588059 TSSK4Q6SA08 328 aa12.3□□□□□ -0.44
VPS4B-202ENST00000588059 EXOC8Q8IYI6 725 aa12.3□□□□□ -0.44
VPS4B-202ENST00000588059 ITFG1Q8TB96 612 aa12.3□□□□□ -0.44
VPS4B-202ENST00000588059 TCP11Q8WWU5 503 aa12.3□□□□□ -0.44
VPS4B-202ENST00000588059 CLSTN3Q9BQT9 956 aa12.3□□□□□ -0.44
VPS4B-202ENST00000588059 RTKNQ9BST9 563 aa12.3□□□□□ -0.44
VPS4B-202ENST00000588059 PHF20Q9BVI0 1012 aa12.3□□□□□ -0.44
VPS4B-202ENST00000588059 PARD6AQ9NPB6 346 aa12.3□□□□□ -0.44
VPS4B-202ENST00000588059 PRMT8Q9NR22 394 aaPredicted RBP12.3□□□□□ -0.44
VPS4B-202ENST00000588059 DDX25Q9UHL0 483 aaKnown RBP12.3□□□□□ -0.44
VPS4B-202ENST00000588059 USP18Q9UMW8 372 aa12.3□□□□□ -0.44
VPS4B-202ENST00000588059 SF3B1O75533 1304 aaKnown RBP eCLIP12.3□□□□□ -0.444e-8■■■■■ 68.9
VPS4B-202ENST00000588059 ZMYM2Q9UBW7 1377 aa12.3□□□□□ -0.44
VPS4B-202ENST00000588059 COL4A2P08572 1712 aa12.29□□□□□ -0.44
VPS4B-202ENST00000588059 INO80B-WBP1J3KQ70 363 aa12.29□□□□□ -0.44
VPS4B-202ENST00000588059 DKC1O60832 514 aaKnown RBP eCLIP12.29□□□□□ -0.44
VPS4B-202ENST00000588059 P4HBP07237 508 aaKnown RBP12.29□□□□□ -0.44
VPS4B-202ENST00000588059 ADRB1P08588 477 aa12.29□□□□□ -0.44
VPS4B-202ENST00000588059 ARF4P18085 180 aaPredicted RBP12.29□□□□□ -0.44
VPS4B-202ENST00000588059 AKAP5P24588 427 aa12.29□□□□□ -0.44
VPS4B-202ENST00000588059 YWHABP31946 246 aaKnown RBP12.29□□□□□ -0.44
VPS4B-202ENST00000588059 RPS9P46781 194 aaKnown RBP12.29□□□□□ -0.44
VPS4B-202ENST00000588059 MBTD1Q05BQ5 628 aa12.29□□□□□ -0.44
VPS4B-202ENST00000588059 HSP90AA2PQ14568 343 aaPredicted RBP12.29□□□□□ -0.44
VPS4B-202ENST00000588059 ST3GAL2Q16842 350 aa12.29□□□□□ -0.44
VPS4B-202ENST00000588059 ZBTB41Q5SVQ8 909 aa12.29□□□□□ -0.44
VPS4B-202ENST00000588059 TPRG1Q6ZUI0 275 aa12.29□□□□□ -0.44
VPS4B-202ENST00000588059 IFNLR1Q8IU57 520 aaPredicted RBP12.29□□□□□ -0.44
VPS4B-202ENST00000588059 NPAS3Q8IXF0 933 aa12.29□□□□□ -0.44
VPS4B-202ENST00000588059 C4orf19Q8IY42 314 aa12.29□□□□□ -0.44
VPS4B-202ENST00000588059 HACE1Q8IYU2 909 aa12.29□□□□□ -0.44
VPS4B-202ENST00000588059 BLIDQ8IZY5 108 aa12.29□□□□□ -0.44
VPS4B-202ENST00000588059 DAGLBQ8NCG7 672 aa12.29□□□□□ -0.44
VPS4B-202ENST00000588059 PIK3R5Q8WYR1 880 aa12.29□□□□□ -0.44
VPS4B-202ENST00000588059 PAAF1Q9BRP4 392 aa12.29□□□□□ -0.44
VPS4B-202ENST00000588059 LXNQ9BS40 222 aa12.29□□□□□ -0.44
VPS4B-202ENST00000588059 AGXT2Q9BYV1 514 aa12.29□□□□□ -0.44
VPS4B-202ENST00000588059 TRIM6Q9C030 488 aaPredicted RBP12.29□□□□□ -0.44
VPS4B-202ENST00000588059 NCOA5Q9HCD5 579 aaKnown RBP12.29□□□□□ -0.44
VPS4B-202ENST00000588059 KCNMB3Q9NPA1 279 aa12.29□□□□□ -0.44
VPS4B-202ENST00000588059 XPNPEP1Q9NQW7 623 aa12.29□□□□□ -0.44
VPS4B-202ENST00000588059 CHD8Q9HCK8 2581 aa12.28□□□□□ -0.44
VPS4B-202ENST00000588059 F5P12259 2224 aa12.28□□□□□ -0.44
VPS4B-202ENST00000588059 SHISA7A6NL88 538 aa12.28□□□□□ -0.44
VPS4B-202ENST00000588059 ADAM12O43184 909 aa12.28□□□□□ -0.44
VPS4B-202ENST00000588059 B4GALT5O43286 388 aa12.28□□□□□ -0.44
VPS4B-202ENST00000588059 TBC1D4O60343 1298 aa12.28□□□□□ -0.44
VPS4B-202ENST00000588059 XYLBO75191 536 aa12.28□□□□□ -0.44
VPS4B-202ENST00000588059 TADA2AO75478 443 aa12.28□□□□□ -0.44
VPS4B-202ENST00000588059 POU2F2P09086 479 aa12.28□□□□□ -0.44
VPS4B-202ENST00000588059 FZD5Q13467 585 aa12.28□□□□□ -0.44
VPS4B-202ENST00000588059 CAPSQ13938 189 aa12.28□□□□□ -0.44
VPS4B-202ENST00000588059 PSMD5Q16401 504 aa12.28□□□□□ -0.44
VPS4B-202ENST00000588059 INF2Q27J81 1249 aa12.28□□□□□ -0.44
VPS4B-202ENST00000588059 XKR9Q5GH70 373 aa12.28□□□□□ -0.44
VPS4B-202ENST00000588059 FBXL16Q8N461 479 aa12.28□□□□□ -0.44
VPS4B-202ENST00000588059 LNX1Q8TBB1 728 aaPredicted RBP12.28□□□□□ -0.44
VPS4B-202ENST00000588059 SLC7A14Q8TBB6 771 aa12.28□□□□□ -0.44
VPS4B-202ENST00000588059 HASPINQ8TF76 798 aa12.28□□□□□ -0.44
VPS4B-202ENST00000588059 FAM20AQ96MK3 541 aa12.28□□□□□ -0.44
VPS4B-202ENST00000588059 JAKMIP1Q96N16 626 aaKnown RBP12.28□□□□□ -0.44
VPS4B-202ENST00000588059 MTRQ99707 1265 aa12.28□□□□□ -0.44
VPS4B-202ENST00000588059 TTPALQ9BTX7 342 aa12.28□□□□□ -0.44
VPS4B-202ENST00000588059 HCFC1R1Q9NWW0 138 aa12.28□□□□□ -0.44
VPS4B-202ENST00000588059 KLK14Q9P0G3 267 aa12.28□□□□□ -0.44
VPS4B-202ENST00000588059 GMEB2Q9UKD1 530 aa12.28□□□□□ -0.44
VPS4B-202ENST00000588059 POLIQ9UNA4 740 aa12.28□□□□□ -0.44
VPS4B-202ENST00000588059 USP24Q9UPU5 2620 aa12.28□□□□□ -0.44
VPS4B-202ENST00000588059 RALGAPA1Q6GYQ0 2036 aa12.27□□□□□ -0.44
VPS4B-202ENST00000588059 ZBTB39O15060 712 aa12.27□□□□□ -0.45
VPS4B-202ENST00000588059 KIF4AO95239 1232 aa12.27□□□□□ -0.45
VPS4B-202ENST00000588059 NPTXRO95502 500 aa12.27□□□□□ -0.45
VPS4B-202ENST00000588059 TDGF1P13385 188 aa12.27□□□□□ -0.45
VPS4B-202ENST00000588059 CCT2P78371 535 aaKnown RBP12.27□□□□□ -0.45
VPS4B-202ENST00000588059 NCBP1Q09161 790 aaKnown RBP12.27□□□□□ -0.45
VPS4B-202ENST00000588059 MTAPQ13126 283 aa12.27□□□□□ -0.45
VPS4B-202ENST00000588059 TFDP1Q14186 410 aa12.27□□□□□ -0.45
VPS4B-202ENST00000588059 MXD4Q14582 209 aaPredicted RBP12.27□□□□□ -0.45
VPS4B-202ENST00000588059 FAM171A1Q5VUB5 890 aa12.27□□□□□ -0.45
VPS4B-202ENST00000588059 CDR2LQ86X02 465 aaPredicted RBP12.27□□□□□ -0.45
VPS4B-202ENST00000588059 ASAP3Q8TDY4 903 aa12.27□□□□□ -0.45
VPS4B-202ENST00000588059 ING5Q8WYH8 240 aa12.27□□□□□ -0.45
VPS4B-202ENST00000588059 KCNB2Q92953 911 aa12.27□□□□□ -0.45
VPS4B-202ENST00000588059 NELL2Q99435 816 aa12.27□□□□□ -0.45
VPS4B-202ENST00000588059 FAM126AQ9BYI3 521 aaPredicted RBP12.27□□□□□ -0.45
VPS4B-202ENST00000588059 SLKQ9H2G2 1235 aaPredicted RBP12.27□□□□□ -0.45
VPS4B-202ENST00000588059 PPP4R2Q9NY27 417 aa12.27□□□□□ -0.45
VPS4B-202ENST00000588059 RGL1Q9NZL6 768 aa12.27□□□□□ -0.45
VPS4B-202ENST00000588059 DNMT3BQ9UBC3 853 aaKnown RBP12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms