RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 RIPOR3Q96MK2 946 aa13.59□□□□□ -0.23
SS18-225ENST00000585121 NECTIN4Q96NY8 510 aa13.59□□□□□ -0.23
SS18-225ENST00000585121 KLHL5Q96PQ7 755 aa13.59□□□□□ -0.23
SS18-225ENST00000585121 ACO2Q99798 780 aaKnown RBP13.59□□□□□ -0.23
SS18-225ENST00000585121 NTPCRQ9BSD7 190 aaKnown RBP13.59□□□□□ -0.23
SS18-225ENST00000585121 CCDC94Q9BW85 323 aaPredicted RBP13.59□□□□□ -0.23
SS18-225ENST00000585121 APOL5Q9BWW9 433 aa13.59□□□□□ -0.23
SS18-225ENST00000585121 S1PR5Q9H228 398 aa13.59□□□□□ -0.23
SS18-225ENST00000585121 ZSCAN16Q9H4T2 348 aaPredicted RBP13.59□□□□□ -0.23
SS18-225ENST00000585121 TOPORSQ9NS56 1045 aaPredicted RBP13.59□□□□□ -0.23
SS18-225ENST00000585121 LARSQ9P2J5 1176 aaKnown RBP13.59□□□□□ -0.23
SS18-225ENST00000585121 ARHGAP28Q9P2N2 729 aa13.59□□□□□ -0.23
SS18-225ENST00000585121 DPP7Q9UHL4 492 aa13.59□□□□□ -0.23
SS18-225ENST00000585121 ADAM28Q9UKQ2 775 aa13.59□□□□□ -0.23
SS18-225ENST00000585121 ADH1AP07327 375 aa13.59□□□□□ -0.23
SS18-225ENST00000585121 HSP90AA1P07900 732 aaKnown RBP13.59□□□□□ -0.23
SS18-225ENST00000585121 TXLNAP40222 546 aa13.59□□□□□ -0.23
SS18-225ENST00000585121 RESTQ13127 1097 aa13.59□□□□□ -0.23
SS18-225ENST00000585121 MAPK7Q13164 816 aa13.59□□□□□ -0.23
SS18-225ENST00000585121 DHX8Q14562 1220 aaKnown RBP13.59□□□□□ -0.23
SS18-225ENST00000585121 HSP90AA2PQ14568 343 aaPredicted RBP13.59□□□□□ -0.23
SS18-225ENST00000585121 ZNF568Q3ZCX4 644 aa13.59□□□□□ -0.23
SS18-225ENST00000585121 FUT10Q6P4F1 479 aa13.59□□□□□ -0.23
SS18-225ENST00000585121 GPBP1Q86WP2 473 aa13.59□□□□□ -0.23
SS18-225ENST00000585121 HSCBQ8IWL3 235 aa13.59□□□□□ -0.23
SS18-225ENST00000585121 SNX21Q969T3 373 aa13.59□□□□□ -0.23
SS18-225ENST00000585121 RPGRIP1Q96KN7 1286 aa13.59□□□□□ -0.23
SS18-225ENST00000585121 ADAM7Q9H2U9 754 aa13.59□□□□□ -0.23
SS18-225ENST00000585121 CCDC39Q9UFE4 941 aa13.59□□□□□ -0.23
SS18-225ENST00000585121 ODF2LQ9ULJ1 636 aa13.59□□□□□ -0.23
SS18-225ENST00000585121 CLIC4Q9Y696 253 aa13.59□□□□□ -0.23
SS18-225ENST00000585121 SF3B1O75533 1304 aaKnown RBP eCLIP13.58□□□□□ -0.244e-6■■■■■ 96
SS18-225ENST00000585121 STX6O43752 255 aa13.58□□□□□ -0.24
SS18-225ENST00000585121 FAM13AO94988 1023 aa13.58□□□□□ -0.24
SS18-225ENST00000585121 EDN1P05305 212 aa13.58□□□□□ -0.24
SS18-225ENST00000585121 CNPP09543 421 aaKnown RBP13.58□□□□□ -0.24
SS18-225ENST00000585121 MCF2P10911 925 aa13.58□□□□□ -0.24
SS18-225ENST00000585121 EPCAMP16422 314 aa13.58□□□□□ -0.24
SS18-225ENST00000585121 PLCG1P19174 1290 aa13.58□□□□□ -0.24
SS18-225ENST00000585121 SCP2P22307 547 aa13.58□□□□□ -0.24
SS18-225ENST00000585121 MARCKSP29966 332 aaPredicted RBP13.58□□□□□ -0.24
SS18-225ENST00000585121 MTHFRP42898 656 aa13.58□□□□□ -0.24
SS18-225ENST00000585121 CREMQ03060 361 aa13.58□□□□□ -0.24
SS18-225ENST00000585121 KARSQ15046 597 aaKnown RBP13.58□□□□□ -0.24
SS18-225ENST00000585121 RARS2Q5T160 578 aaKnown RBP13.58□□□□□ -0.24
SS18-225ENST00000585121 TAS1R1Q7RTX1 841 aa13.58□□□□□ -0.24
SS18-225ENST00000585121 SLC22A17Q8WUG5 538 aa13.58□□□□□ -0.24
SS18-225ENST00000585121 KHSRPQ92945 711 aaKnown RBP eCLIP13.58□□□□□ -0.243e-7■■■■□ 20.1
SS18-225ENST00000585121 FBXL18Q96ME1 805 aa13.58□□□□□ -0.24
SS18-225ENST00000585121 TARS2Q9BW92 718 aaKnown RBP13.58□□□□□ -0.24
SS18-225ENST00000585121 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP13.58□□□□□ -0.24
SS18-225ENST00000585121 NR2E1Q9Y466 385 aa13.58□□□□□ -0.24
SS18-225ENST00000585121 NPHP3-ACAD11A0A0J9YXS1 232 aa13.57□□□□□ -0.24
SS18-225ENST00000585121 CASTOR2A6NHX0 329 aa13.57□□□□□ -0.24
SS18-225ENST00000585121 LOC730098B7Z3J9 87 aa13.57□□□□□ -0.24
SS18-225ENST00000585121 PTGESO14684 152 aa13.57□□□□□ -0.24
SS18-225ENST00000585121 GPR37L1O60883 481 aa13.57□□□□□ -0.24
SS18-225ENST00000585121 LILRB3O75022 631 aa13.57□□□□□ -0.24
SS18-225ENST00000585121 GRM5P41594 1212 aa13.57□□□□□ -0.24
SS18-225ENST00000585121 MATR3P43243 847 aaKnown RBP eCLIP13.57□□□□□ -0.249e-6■■■■□ 21.7
SS18-225ENST00000585121 CLCN4P51793 760 aa13.57□□□□□ -0.24
SS18-225ENST00000585121 DSG1Q02413 1049 aa13.57□□□□□ -0.24
SS18-225ENST00000585121 CEBPZQ03701 1054 aaKnown RBP13.57□□□□□ -0.24
SS18-225ENST00000585121 ELAVL2Q12926 359 aaKnown RBP13.57□□□□□ -0.24
SS18-225ENST00000585121 ATAT1Q5SQI0 421 aa13.57□□□□□ -0.24
SS18-225ENST00000585121 MPZL3Q6UWV2 235 aa13.57□□□□□ -0.24
SS18-225ENST00000585121 ZBTB33Q86T24 672 aa13.57□□□□□ -0.24
SS18-225ENST00000585121 RNF135Q8IUD6 432 aa13.57□□□□□ -0.24
SS18-225ENST00000585121 GPR65Q8IYL9 337 aa13.57□□□□□ -0.24
SS18-225ENST00000585121 MYCT1Q8N699 235 aa13.57□□□□□ -0.24
SS18-225ENST00000585121 TMEM161BQ8NDZ6 487 aa13.57□□□□□ -0.24
SS18-225ENST00000585121 RAD54LQ92698 747 aa13.57□□□□□ -0.24
SS18-225ENST00000585121 BICD1Q96G01 975 aa13.57□□□□□ -0.24
SS18-225ENST00000585121 ACAP3Q96P50 834 aa13.57□□□□□ -0.24
SS18-225ENST00000585121 CCSER1Q9C0I3 900 aa13.57□□□□□ -0.24
SS18-225ENST00000585121 CDT1Q9H211 546 aa13.57□□□□□ -0.24
SS18-225ENST00000585121 SFXN1Q9H9B4 322 aa13.57□□□□□ -0.24
SS18-225ENST00000585121 PTPRHQ9HD43 1115 aa13.57□□□□□ -0.24
SS18-225ENST00000585121 MTMR6Q9Y217 621 aa13.57□□□□□ -0.24
SS18-225ENST00000585121 SRPRBQ9Y5M8 271 aaKnown RBP13.57□□□□□ -0.24
SS18-225ENST00000585121 F8W810 466 aa13.56□□□□□ -0.24
SS18-225ENST00000585121 TBCAO75347 108 aaKnown RBP13.56□□□□□ -0.24
SS18-225ENST00000585121 TOM1L1O75674 476 aa13.56□□□□□ -0.24
SS18-225ENST00000585121 GLUD1P00367 558 aa13.56□□□□□ -0.24
SS18-225ENST00000585121 MAPTP10636 758 aaKnown RBP13.56□□□□□ -0.24
SS18-225ENST00000585121 PDIA4P13667 645 aaKnown RBP13.56□□□□□ -0.24
SS18-225ENST00000585121 ABCD1P33897 745 aa13.56□□□□□ -0.24
SS18-225ENST00000585121 DDIT3P35638 169 aa13.56□□□□□ -0.24
SS18-225ENST00000585121 OSTNP61366 133 aa13.56□□□□□ -0.24
SS18-225ENST00000585121 CACNB1Q02641 598 aaPredicted RBP13.56□□□□□ -0.24
SS18-225ENST00000585121 GRIN1Q05586 938 aa13.56□□□□□ -0.24
SS18-225ENST00000585121 MCM6Q14566 821 aa13.56□□□□□ -0.24
SS18-225ENST00000585121 PTPAQ15257 358 aa13.56□□□□□ -0.24
SS18-225ENST00000585121 ARSHQ5FYA8 562 aa13.56□□□□□ -0.24
SS18-225ENST00000585121 KIAA0319Q5VV43 1072 aa13.56□□□□□ -0.24
SS18-225ENST00000585121 TAS1R3Q7RTX0 852 aa13.56□□□□□ -0.24
SS18-225ENST00000585121 RNF168Q8IYW5 571 aaPredicted RBP13.56□□□□□ -0.24
SS18-225ENST00000585121 RIN2Q8WYP3 895 aaPredicted RBP13.56□□□□□ -0.24
SS18-225ENST00000585121 LARP4BQ92615 738 aaKnown RBP13.56□□□□□ -0.24
SS18-225ENST00000585121 RABGGTAQ92696 567 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms