RNA–Protein interactions for RNA: ENST00000577085.1

SF3B3-215, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 4

Gene SF3B3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-215ENST00000577085 TOPORSQ9NS56 1045 aaPredicted RBP17.04■□□□□ 0.32
SF3B3-215ENST00000577085 FOXD4L1Q9NU39 408 aa17.04■□□□□ 0.32
SF3B3-215ENST00000577085 DPP7Q9UHL4 492 aa17.04■□□□□ 0.32
SF3B3-215ENST00000577085 ADAM28Q9UKQ2 775 aa17.04■□□□□ 0.32
SF3B3-215ENST00000577085 TNFSF13BQ9Y275 285 aa17.04■□□□□ 0.32
SF3B3-215ENST00000577085 NR2E1Q9Y466 385 aa17.04■□□□□ 0.32
SF3B3-215ENST00000577085 SF3B1O75533 1304 aaKnown RBP eCLIP17.03■□□□□ 0.328e-6■■■■■ 107
SF3B3-215ENST00000577085 CASTOR2A6NHX0 329 aa17.03■□□□□ 0.32
SF3B3-215ENST00000577085 H0YCG3 227 aa17.03■□□□□ 0.32
SF3B3-215ENST00000577085 K7ELQ4 463 aaPredicted RBP17.03■□□□□ 0.32
SF3B3-215ENST00000577085 SLC16A4O15374 487 aa17.03■□□□□ 0.32
SF3B3-215ENST00000577085 CNPP09543 421 aaKnown RBP17.03■□□□□ 0.32
SF3B3-215ENST00000577085 PLS3P13797 630 aa17.03■□□□□ 0.32
SF3B3-215ENST00000577085 SYT1P21579 422 aa17.03■□□□□ 0.32
SF3B3-215ENST00000577085 MTHFRP42898 656 aa17.03■□□□□ 0.32
SF3B3-215ENST00000577085 DHX8Q14562 1220 aaKnown RBP17.03■□□□□ 0.32
SF3B3-215ENST00000577085 USP41Q3LFD5 358 aa17.03■□□□□ 0.32
SF3B3-215ENST00000577085 TMEM119Q4V9L6 283 aa17.03■□□□□ 0.32
SF3B3-215ENST00000577085 ATAT1Q5SQI0 421 aa17.03■□□□□ 0.32
SF3B3-215ENST00000577085 ZBTB33Q86T24 672 aa17.03■□□□□ 0.32
SF3B3-215ENST00000577085 DAW1Q8N136 415 aa17.03■□□□□ 0.32
SF3B3-215ENST00000577085 RABGGTAQ92696 567 aa17.03■□□□□ 0.32
SF3B3-215ENST00000577085 FBXL18Q96ME1 805 aa17.03■□□□□ 0.32
SF3B3-215ENST00000577085 KLHL5Q96PQ7 755 aa17.03■□□□□ 0.32
SF3B3-215ENST00000577085 CCDC94Q9BW85 323 aaPredicted RBP17.03■□□□□ 0.32
SF3B3-215ENST00000577085 LARSQ9P2J5 1176 aaKnown RBP17.03■□□□□ 0.32
SF3B3-215ENST00000577085 ARHGAP28Q9P2N2 729 aa17.03■□□□□ 0.32
SF3B3-215ENST00000577085 MUTYHQ9UIF7 546 aa17.03■□□□□ 0.32
SF3B3-215ENST00000577085 C5orf42Q9H799 3197 aa17.02■□□□□ 0.32
SF3B3-215ENST00000577085 TDRD15B5MCY1 1934 aaKnown RBP17.02■□□□□ 0.32
SF3B3-215ENST00000577085 LOC730098B7Z3J9 87 aa17.02■□□□□ 0.32
SF3B3-215ENST00000577085 GPR37L1O60883 481 aa17.02■□□□□ 0.32
SF3B3-215ENST00000577085 EDN1P05305 212 aa17.02■□□□□ 0.32
SF3B3-215ENST00000577085 HSP90AA1P07900 732 aaKnown RBP17.02■□□□□ 0.32
SF3B3-215ENST00000577085 SP100P23497 879 aaPredicted RBP17.02■□□□□ 0.32
SF3B3-215ENST00000577085 TXLNAP40222 546 aa17.02■□□□□ 0.32
SF3B3-215ENST00000577085 MATR3P43243 847 aaKnown RBP eCLIP17.02■□□□□ 0.32
SF3B3-215ENST00000577085 SLC12A3P55017 1021 aa17.02■□□□□ 0.32
SF3B3-215ENST00000577085 CREMQ03060 361 aa17.02■□□□□ 0.32
SF3B3-215ENST00000577085 FUT10Q6P4F1 479 aa17.02■□□□□ 0.32
SF3B3-215ENST00000577085 TAS1R1Q7RTX1 841 aa17.02■□□□□ 0.32
SF3B3-215ENST00000577085 GPBP1Q86WP2 473 aa17.02■□□□□ 0.32
SF3B3-215ENST00000577085 C12orf76Q8N812 135 aaPredicted RBP17.02■□□□□ 0.32
SF3B3-215ENST00000577085 HASPINQ8TF76 798 aa17.02■□□□□ 0.32
SF3B3-215ENST00000577085 SLC22A17Q8WUG5 538 aa17.02■□□□□ 0.32
SF3B3-215ENST00000577085 ACO2Q99798 780 aaKnown RBP17.02■□□□□ 0.32
SF3B3-215ENST00000577085 LRFN3Q9BTN0 628 aa17.02■□□□□ 0.32
SF3B3-215ENST00000577085 TARS2Q9BW92 718 aaKnown RBP17.02■□□□□ 0.32
SF3B3-215ENST00000577085 SFXN1Q9H9B4 322 aa17.02■□□□□ 0.32
SF3B3-215ENST00000577085 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP17.02■□□□□ 0.32
SF3B3-215ENST00000577085 BDP1A6H8Y1 2624 aa17.02■□□□□ 0.32
SF3B3-215ENST00000577085 F8W810 466 aa17.01■□□□□ 0.31
SF3B3-215ENST00000577085 PTGESO14684 152 aa17.01■□□□□ 0.31
SF3B3-215ENST00000577085 HARSP12081 509 aaKnown RBP17.01■□□□□ 0.31
SF3B3-215ENST00000577085 CLCN4P51793 760 aa17.01■□□□□ 0.31
SF3B3-215ENST00000577085 OSTNP61366 133 aa17.01■□□□□ 0.31
SF3B3-215ENST00000577085 DSG1Q02413 1049 aa17.01■□□□□ 0.31
SF3B3-215ENST00000577085 CEBPZQ03701 1054 aaKnown RBP17.01■□□□□ 0.31
SF3B3-215ENST00000577085 MAPK7Q13164 816 aa17.01■□□□□ 0.31
SF3B3-215ENST00000577085 KARSQ15046 597 aaKnown RBP17.01■□□□□ 0.31
SF3B3-215ENST00000577085 TMC5Q6UXY8 1006 aa17.01■□□□□ 0.31
SF3B3-215ENST00000577085 SPIRE2Q8WWL2 714 aa17.01■□□□□ 0.31
SF3B3-215ENST00000577085 RIN2Q8WYP3 895 aaPredicted RBP17.01■□□□□ 0.31
SF3B3-215ENST00000577085 BICD1Q96G01 975 aa17.01■□□□□ 0.31
SF3B3-215ENST00000577085 NTPCRQ9BSD7 190 aaKnown RBP17.01■□□□□ 0.31
SF3B3-215ENST00000577085 ZHX3Q9H4I2 956 aa17.01■□□□□ 0.31
SF3B3-215ENST00000577085 ANKFY1Q9P2R3 1169 aa17.01■□□□□ 0.31
SF3B3-215ENST00000577085 CCDC39Q9UFE4 941 aa17.01■□□□□ 0.31
SF3B3-215ENST00000577085 ODF2LQ9ULJ1 636 aa17.01■□□□□ 0.31
SF3B3-215ENST00000577085 HCN4Q9Y3Q4 1203 aa17.01■□□□□ 0.31
SF3B3-215ENST00000577085 CLIC4Q9Y696 253 aa17.01■□□□□ 0.31
SF3B3-215ENST00000577085 NPHP3-ACAD11A0A0J9YXS1 232 aa17■□□□□ 0.31
SF3B3-215ENST00000577085 PRR33A8MZF0 331 aa17■□□□□ 0.31
SF3B3-215ENST00000577085 TEX28O15482 410 aa17■□□□□ 0.31
SF3B3-215ENST00000577085 TBCAO75347 108 aaKnown RBP17■□□□□ 0.31
SF3B3-215ENST00000577085 FAM13AO94988 1023 aa17■□□□□ 0.31
SF3B3-215ENST00000577085 GLUD1P00367 558 aa17■□□□□ 0.31
SF3B3-215ENST00000577085 WEE2P0C1S8 567 aa17■□□□□ 0.31
SF3B3-215ENST00000577085 MCF2P10911 925 aa17■□□□□ 0.31
SF3B3-215ENST00000577085 PLCG1P19174 1290 aa17■□□□□ 0.31
SF3B3-215ENST00000577085 MARCKSP29966 332 aaPredicted RBP17■□□□□ 0.31
SF3B3-215ENST00000577085 GRM5P41594 1212 aa17■□□□□ 0.31
SF3B3-215ENST00000577085 CACNB1Q02641 598 aaPredicted RBP17■□□□□ 0.31
SF3B3-215ENST00000577085 ELAVL2Q12926 359 aaKnown RBP17■□□□□ 0.31
SF3B3-215ENST00000577085 HERC4Q5GLZ8 1057 aaPredicted RBP17■□□□□ 0.31
SF3B3-215ENST00000577085 GLRA4Q5JXX5 417 aa17■□□□□ 0.31
SF3B3-215ENST00000577085 KIAA0319Q5VV43 1072 aa17■□□□□ 0.31
SF3B3-215ENST00000577085 MPZL3Q6UWV2 235 aa17■□□□□ 0.31
SF3B3-215ENST00000577085 CEP57Q86XR8 500 aa17■□□□□ 0.31
SF3B3-215ENST00000577085 HSCBQ8IWL3 235 aa17■□□□□ 0.31
SF3B3-215ENST00000577085 MYCT1Q8N699 235 aa17■□□□□ 0.31
SF3B3-215ENST00000577085 B3GALT6Q96L58 329 aa17■□□□□ 0.31
SF3B3-215ENST00000577085 GPR62Q9BZJ7 368 aa17■□□□□ 0.31
SF3B3-215ENST00000577085 CDT1Q9H211 546 aa17■□□□□ 0.31
SF3B3-215ENST00000577085 CACNG4Q9UBN1 327 aa17■□□□□ 0.31
SF3B3-215ENST00000577085 NCOR1O75376 2440 aa16.99■□□□□ 0.31
SF3B3-215ENST00000577085 LILRB3O75022 631 aa16.99■□□□□ 0.31
SF3B3-215ENST00000577085 TOM1L1O75674 476 aa16.99■□□□□ 0.31
SF3B3-215ENST00000577085 KIF4AO95239 1232 aa16.99■□□□□ 0.31
SF3B3-215ENST00000577085 FAM171A1Q5VUB5 890 aa16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms