RNA–Protein interactions for RNA: ENST00000575976.1

NUP88-211, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-211ENST00000575976 CENPPQ6IPU0 288 aa9.35□□□□□ -0.91
NUP88-211ENST00000575976 KLHL10Q6JEL2 608 aa9.35□□□□□ -0.91
NUP88-211ENST00000575976 HS2ST1Q7LGA3 356 aa9.35□□□□□ -0.91
NUP88-211ENST00000575976 APBB1IPQ7Z5R6 666 aaPredicted RBP9.35□□□□□ -0.91
NUP88-211ENST00000575976 HERC6Q8IVU3 1022 aa9.35□□□□□ -0.91
NUP88-211ENST00000575976 ZSWIM2Q8NEG5 633 aa9.35□□□□□ -0.91
NUP88-211ENST00000575976 FAM122AQ96E09 287 aa9.35□□□□□ -0.91
NUP88-211ENST00000575976 SAAL1Q96ER3 474 aa9.35□□□□□ -0.91
NUP88-211ENST00000575976 GUCD1Q96NT3 240 aa9.35□□□□□ -0.91
NUP88-211ENST00000575976 CCDC94Q9BW85 323 aaPredicted RBP9.35□□□□□ -0.91
NUP88-211ENST00000575976 RNF216Q9NWF9 866 aaPredicted RBP9.35□□□□□ -0.91
NUP88-211ENST00000575976 KLK14Q9P0G3 267 aa9.35□□□□□ -0.91
NUP88-211ENST00000575976 PARP2Q9UGN5 583 aa9.35□□□□□ -0.91
NUP88-211ENST00000575976 AGO2Q9UKV8 859 aaKnown RBP9.35□□□□□ -0.91
NUP88-211ENST00000575976 TRAF3IP3Q9Y228 551 aa9.35□□□□□ -0.91
NUP88-211ENST00000575976 HSFX4A0A1B0GTS1 333 aaPredicted RBP9.34□□□□□ -0.91
NUP88-211ENST00000575976 HSFX3A0A1B0GWH4 333 aaPredicted RBP9.34□□□□□ -0.91
NUP88-211ENST00000575976 TRIM49BA6NDI0 452 aa9.34□□□□□ -0.91
NUP88-211ENST00000575976 PSMA7O14818 248 aa9.34□□□□□ -0.91
NUP88-211ENST00000575976 MEFVO15553 781 aaPredicted RBP9.34□□□□□ -0.91
NUP88-211ENST00000575976 CALUO43852 315 aaPredicted RBP9.34□□□□□ -0.91
NUP88-211ENST00000575976 FAM189A1O60320 539 aa9.34□□□□□ -0.91
NUP88-211ENST00000575976 OFD1O75665 1012 aa9.34□□□□□ -0.91
NUP88-211ENST00000575976 DGKIO75912 1065 aa9.34□□□□□ -0.91
NUP88-211ENST00000575976 RECQL4O94761 1208 aa9.34□□□□□ -0.91
NUP88-211ENST00000575976 GJB5O95377 273 aa9.34□□□□□ -0.91
NUP88-211ENST00000575976 CCNE1P24864 410 aa9.34□□□□□ -0.91
NUP88-211ENST00000575976 TNFSF9P41273 254 aa9.34□□□□□ -0.91
NUP88-211ENST00000575976 ACOT2P49753 483 aa9.34□□□□□ -0.91
NUP88-211ENST00000575976 CYP2J2P51589 502 aa9.34□□□□□ -0.91
NUP88-211ENST00000575976 AFF1P51825 1210 aaKnown RBP9.34□□□□□ -0.91
NUP88-211ENST00000575976 RABGGTBP53611 331 aa9.34□□□□□ -0.91
NUP88-211ENST00000575976 HTRA4P83105 476 aaPredicted RBP9.34□□□□□ -0.91
NUP88-211ENST00000575976 STIM1Q13586 685 aa9.34□□□□□ -0.91
NUP88-211ENST00000575976 DPCR1Q3MIW9 517 aa9.34□□□□□ -0.91
NUP88-211ENST00000575976 ZCWPW2Q504Y3 356 aa9.34□□□□□ -0.91
NUP88-211ENST00000575976 CLLU1OSQ5K130 101 aa9.34□□□□□ -0.91
NUP88-211ENST00000575976 ANKRD40Q6AI12 368 aa9.34□□□□□ -0.91
NUP88-211ENST00000575976 SASS6Q6UVJ0 657 aa9.34□□□□□ -0.91
NUP88-211ENST00000575976 CRELD2Q6UXH1 353 aaPredicted RBP9.34□□□□□ -0.91
NUP88-211ENST00000575976 C12orf56Q8IXR9 622 aa9.34□□□□□ -0.91
NUP88-211ENST00000575976 HACE1Q8IYU2 909 aa9.34□□□□□ -0.91
NUP88-211ENST00000575976 MLKLQ8NB16 471 aa9.34□□□□□ -0.91
NUP88-211ENST00000575976 MAFAQ8NHW3 353 aaPredicted RBP9.34□□□□□ -0.91
NUP88-211ENST00000575976 GOLGA5Q8TBA6 731 aa9.34□□□□□ -0.91
NUP88-211ENST00000575976 HELQQ8TDG4 1101 aa9.34□□□□□ -0.91
NUP88-211ENST00000575976 NELFBQ8WX92 580 aa9.34□□□□□ -0.91
NUP88-211ENST00000575976 P2RX5Q93086 422 aa9.34□□□□□ -0.91
NUP88-211ENST00000575976 ZNF689Q96CS4 500 aaPredicted RBP9.34□□□□□ -0.91
NUP88-211ENST00000575976 DHTKD1Q96HY7 919 aaPredicted RBP9.34□□□□□ -0.91
NUP88-211ENST00000575976 ACAP3Q96P50 834 aa9.34□□□□□ -0.91
NUP88-211ENST00000575976 CASD1Q96PB1 797 aa9.34□□□□□ -0.91
NUP88-211ENST00000575976 GAD1Q99259 594 aa9.34□□□□□ -0.91
NUP88-211ENST00000575976 FAM213AQ9BRX8 229 aa9.34□□□□□ -0.91
NUP88-211ENST00000575976 ZBED2Q9BTP6 218 aa9.34□□□□□ -0.91
NUP88-211ENST00000575976 CXCL16Q9H2A7 254 aa9.34□□□□□ -0.91
NUP88-211ENST00000575976 RSAD1Q9HA92 442 aa9.34□□□□□ -0.91
NUP88-211ENST00000575976 DMAC2Q9NW81 257 aa9.34□□□□□ -0.91
NUP88-211ENST00000575976 MIOSQ9NXC5 875 aa9.34□□□□□ -0.91
NUP88-211ENST00000575976 HSPBP1Q9NZL4 362 aa9.34□□□□□ -0.91
NUP88-211ENST00000575976 CGNQ9P2M7 1197 aaKnown RBP9.34□□□□□ -0.91
NUP88-211ENST00000575976 CPSF3Q9UKF6 684 aaKnown RBP9.34□□□□□ -0.91
NUP88-211ENST00000575976 CTNND2Q9UQB3 1225 aa9.34□□□□□ -0.91
NUP88-211ENST00000575976 GIT1Q9Y2X7 761 aa9.34□□□□□ -0.91
NUP88-211ENST00000575976 TTC3P53804 2025 aa9.33□□□□□ -0.92
NUP88-211ENST00000575976 TBKBP1A7MCY6 615 aa9.33□□□□□ -0.92
NUP88-211ENST00000575976 TNFRSF10AO00220 468 aa9.33□□□□□ -0.92
NUP88-211ENST00000575976 KIAA0391O15091 583 aaKnown RBP9.33□□□□□ -0.92
NUP88-211ENST00000575976 HOXA2O43364 376 aa9.33□□□□□ -0.92
NUP88-211ENST00000575976 TLL1O43897 1013 aa9.33□□□□□ -0.92
NUP88-211ENST00000575976 EXTL3O43909 919 aa9.33□□□□□ -0.92
NUP88-211ENST00000575976 LETM1O95202 739 aaPredicted RBP9.33□□□□□ -0.92
NUP88-211ENST00000575976 LDHAP00338 332 aaKnown RBP9.33□□□□□ -0.92
NUP88-211ENST00000575976 NR3C1P04150 777 aa9.33□□□□□ -0.92
NUP88-211ENST00000575976 CLTAP09496 248 aa9.33□□□□□ -0.92
NUP88-211ENST00000575976 MYOGP15173 224 aa9.33□□□□□ -0.92
NUP88-211ENST00000575976 MLH1P40692 756 aa9.33□□□□□ -0.92
NUP88-211ENST00000575976 STX17P56962 302 aa9.33□□□□□ -0.92
NUP88-211ENST00000575976 KYAT1Q16773 422 aa9.33□□□□□ -0.92
NUP88-211ENST00000575976 SLC10A6Q3KNW5 377 aa9.33□□□□□ -0.92
NUP88-211ENST00000575976 PAN2Q504Q3 1202 aaKnown RBP9.33□□□□□ -0.92
NUP88-211ENST00000575976 SLC9A9Q8IVB4 645 aa9.33□□□□□ -0.92
NUP88-211ENST00000575976 ABI1Q8IZP0 508 aa9.33□□□□□ -0.92
NUP88-211ENST00000575976 GPD1LQ8N335 351 aa9.33□□□□□ -0.92
NUP88-211ENST00000575976 RDH13Q8NBN7 331 aa9.33□□□□□ -0.92
NUP88-211ENST00000575976 NOC3LQ8WTT2 800 aaKnown RBP9.33□□□□□ -0.92
NUP88-211ENST00000575976 ZFP42Q96MM3 310 aa9.33□□□□□ -0.92
NUP88-211ENST00000575976 FAM161BQ96MY7 647 aa9.33□□□□□ -0.92
NUP88-211ENST00000575976 YME1L1Q96TA2 773 aa9.33□□□□□ -0.92
NUP88-211ENST00000575976 RAD9AQ99638 391 aa9.33□□□□□ -0.92
NUP88-211ENST00000575976 TSG101Q99816 390 aa9.33□□□□□ -0.92
NUP88-211ENST00000575976 TMEM117Q9H0C3 514 aa9.33□□□□□ -0.92
NUP88-211ENST00000575976 RPF1Q9H9Y2 349 aaKnown RBP9.33□□□□□ -0.92
NUP88-211ENST00000575976 RC3H2Q9HBD1 1191 aaKnown RBP9.33□□□□□ -0.92
NUP88-211ENST00000575976 UBN1Q9NPG3 1134 aa9.33□□□□□ -0.92
NUP88-211ENST00000575976 INPP5FQ9Y2H2 1132 aa9.33□□□□□ -0.92
NUP88-211ENST00000575976 MUC3AQ02505 3323 aa9.33□□□□□ -0.92
NUP88-211ENST00000575976 PTPRSQ13332 1948 aa9.33□□□□□ -0.92
NUP88-211ENST00000575976 SYCE3A1L190 88 aa9.32□□□□□ -0.92
NUP88-211ENST00000575976 LCHNA4D1U4 455 aa9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms