RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 ACAP3Q96P50 834 aa18.62■□□□□ 0.57
NUP88-210ENST00000574867 APOL6Q9BWW8 343 aa18.62■□□□□ 0.57
NUP88-210ENST00000574867 PRO3102Q9H379 93 aa18.62■□□□□ 0.57
NUP88-210ENST00000574867 RSAD1Q9HA92 442 aa18.62■□□□□ 0.57
NUP88-210ENST00000574867 RWDD2AQ9UIY3 292 aa18.62■□□□□ 0.57
NUP88-210ENST00000574867 GIT1Q9Y2X7 761 aa18.62■□□□□ 0.57
NUP88-210ENST00000574867 RECQL4O94761 1208 aa18.62■□□□□ 0.57
NUP88-210ENST00000574867 NR2F2P24468 414 aa18.62■□□□□ 0.57
NUP88-210ENST00000574867 ERCC5P28715 1186 aaPredicted RBP18.62■□□□□ 0.57
NUP88-210ENST00000574867 CYP2J2P51589 502 aa18.62■□□□□ 0.57
NUP88-210ENST00000574867 GLB1LQ6UWU2 654 aa18.62■□□□□ 0.57
NUP88-210ENST00000574867 AGMOQ6ZNB7 445 aa18.62■□□□□ 0.57
NUP88-210ENST00000574867 SAAL1Q96ER3 474 aa18.62■□□□□ 0.57
NUP88-210ENST00000574867 PCIF1Q9H4Z3 704 aa18.62■□□□□ 0.57
NUP88-210ENST00000574867 SNTG2Q9NY99 539 aa18.62■□□□□ 0.57
NUP88-210ENST00000574867 PARP2Q9UGN5 583 aa18.62■□□□□ 0.57
NUP88-210ENST00000574867 CPSF3Q9UKF6 684 aaKnown RBP18.62■□□□□ 0.57
NUP88-210ENST00000574867 COL4A6Q14031 1691 aa18.62■□□□□ 0.57
NUP88-210ENST00000574867 CITO14578 2027 aa18.61■□□□□ 0.57
NUP88-210ENST00000574867 UPP2O95045 317 aa18.61■□□□□ 0.57
NUP88-210ENST00000574867 GJB5O95377 273 aa18.61■□□□□ 0.57
NUP88-210ENST00000574867 OSTNP61366 133 aa18.61■□□□□ 0.57
NUP88-210ENST00000574867 PRPF38BQ5VTL8 546 aaKnown RBP18.61■□□□□ 0.57
NUP88-210ENST00000574867 HERC6Q8IVU3 1022 aa18.61■□□□□ 0.57
NUP88-210ENST00000574867 ABI1Q8IZP0 508 aa18.61■□□□□ 0.57
NUP88-210ENST00000574867 LPPQ93052 612 aa18.61■□□□□ 0.57
NUP88-210ENST00000574867 FBXL18Q96ME1 805 aa18.61■□□□□ 0.57
NUP88-210ENST00000574867 RNF39Q9H2S5 420 aa18.61■□□□□ 0.57
NUP88-210ENST00000574867 DMAC2Q9NW81 257 aa18.61■□□□□ 0.57
NUP88-210ENST00000574867 A0A1W2PPC1 479 aa18.61■□□□□ 0.57
NUP88-210ENST00000574867 TRIM49BA6NDI0 452 aa18.61■□□□□ 0.57
NUP88-210ENST00000574867 EXOC3O60645 756 aa18.61■□□□□ 0.57
NUP88-210ENST00000574867 AKAP5P24588 427 aa18.61■□□□□ 0.57
NUP88-210ENST00000574867 PMS1P54277 932 aaKnown RBP18.61■□□□□ 0.57
NUP88-210ENST00000574867 ANKRD40Q6AI12 368 aa18.61■□□□□ 0.57
NUP88-210ENST00000574867 TTI2Q6NXR4 508 aa18.61■□□□□ 0.57
NUP88-210ENST00000574867 FAM213AQ9BRX8 229 aa18.61■□□□□ 0.57
NUP88-210ENST00000574867 MEIS3P2A8K0S8 358 aa18.6■□□□□ 0.57
NUP88-210ENST00000574867 INPPL1O15357 1258 aa18.6■□□□□ 0.57
NUP88-210ENST00000574867 DGKIO75912 1065 aa18.6■□□□□ 0.57
NUP88-210ENST00000574867 FGFR1P11362 822 aa18.6■□□□□ 0.57
NUP88-210ENST00000574867 TNFSF9P41273 254 aa18.6■□□□□ 0.57
NUP88-210ENST00000574867 FKBP3Q00688 224 aaKnown RBP18.6■□□□□ 0.57
NUP88-210ENST00000574867 SEZ6Q53EL9 994 aa18.6■□□□□ 0.57
NUP88-210ENST00000574867 ZC3H3Q8IXZ2 948 aaKnown RBP18.6■□□□□ 0.57
NUP88-210ENST00000574867 FUCA2Q9BTY2 467 aa18.6■□□□□ 0.57
NUP88-210ENST00000574867 TMEM117Q9H0C3 514 aa18.6■□□□□ 0.57
NUP88-210ENST00000574867 RPF1Q9H9Y2 349 aaKnown RBP18.6■□□□□ 0.57
NUP88-210ENST00000574867 PLEKHA5Q9HAU0 1116 aa18.6■□□□□ 0.57
NUP88-210ENST00000574867 FRMD4BQ9Y2L6 1034 aa18.6■□□□□ 0.57
NUP88-210ENST00000574867 ACOT2P49753 483 aa18.59■□□□□ 0.57
NUP88-210ENST00000574867 ADAM9Q13443 819 aa18.59■□□□□ 0.57
NUP88-210ENST00000574867 SNRNP35Q16560 246 aaKnown RBP18.59■□□□□ 0.57
NUP88-210ENST00000574867 CLLU1OSQ5K130 101 aa18.59■□□□□ 0.57
NUP88-210ENST00000574867 ZBTB41Q5SVQ8 909 aa18.59■□□□□ 0.57
NUP88-210ENST00000574867 CRELD2Q6UXH1 353 aaPredicted RBP18.59■□□□□ 0.57
NUP88-210ENST00000574867 TMEM192Q8IY95 271 aa18.59■□□□□ 0.57
NUP88-210ENST00000574867 SNX27Q96L92 541 aa18.59■□□□□ 0.57
NUP88-210ENST00000574867 RPS6KC1Q96S38 1066 aa18.59■□□□□ 0.57
NUP88-210ENST00000574867 ZBED2Q9BTP6 218 aa18.59■□□□□ 0.57
NUP88-210ENST00000574867 MRPL9Q9BYD2 267 aaKnown RBP18.59■□□□□ 0.57
NUP88-210ENST00000574867 NAT10Q9H0A0 1025 aaKnown RBP18.59■□□□□ 0.57
NUP88-210ENST00000574867 RC3H2Q9HBD1 1191 aaKnown RBP18.59■□□□□ 0.57
NUP88-210ENST00000574867 RNF19AQ9NV58 838 aa18.59■□□□□ 0.57
NUP88-210ENST00000574867 FNDC1Q4ZHG4 1894 aaPredicted RBP18.59■□□□□ 0.57
NUP88-210ENST00000574867 ZNF233A6NK53 670 aa18.59■□□□□ 0.57
NUP88-210ENST00000574867 CETN3O15182 167 aa18.59■□□□□ 0.57
NUP88-210ENST00000574867 CXCL8P10145 99 aa18.59■□□□□ 0.57
NUP88-210ENST00000574867 MLH1P40692 756 aa18.59■□□□□ 0.57
NUP88-210ENST00000574867 HTRA4P83105 476 aaPredicted RBP18.59■□□□□ 0.57
NUP88-210ENST00000574867 PPP2R3AQ06190 1150 aa18.59■□□□□ 0.57
NUP88-210ENST00000574867 ENOX2Q16206 610 aaKnown RBP18.59■□□□□ 0.57
NUP88-210ENST00000574867 BRSK2Q8IWQ3 736 aa18.59■□□□□ 0.57
NUP88-210ENST00000574867 CD302Q8IX05 232 aa18.59■□□□□ 0.57
NUP88-210ENST00000574867 URGCPQ8TCY9 931 aa18.59■□□□□ 0.57
NUP88-210ENST00000574867 HELQQ8TDG4 1101 aa18.59■□□□□ 0.57
NUP88-210ENST00000574867 NOC3LQ8WTT2 800 aaKnown RBP18.59■□□□□ 0.57
NUP88-210ENST00000574867 YME1L1Q96TA2 773 aa18.59■□□□□ 0.57
NUP88-210ENST00000574867 RBAKQ9NYW8 714 aaPredicted RBP18.59■□□□□ 0.57
NUP88-210ENST00000574867 GOLGA8IPA6NC78 632 aa18.58■□□□□ 0.57
NUP88-210ENST00000574867 ARL5CA6NH57 179 aa18.58■□□□□ 0.57
NUP88-210ENST00000574867 GOLGA8JA6NMD2 632 aa18.58■□□□□ 0.57
NUP88-210ENST00000574867 MAPK13O15264 365 aa18.58■□□□□ 0.57
NUP88-210ENST00000574867 OFD1O75665 1012 aa18.58■□□□□ 0.57
NUP88-210ENST00000574867 IL18RAPO95256 599 aa18.58■□□□□ 0.57
NUP88-210ENST00000574867 STX17P56962 302 aa18.58■□□□□ 0.57
NUP88-210ENST00000574867 FAM117BQ6P1L5 589 aa18.58■□□□□ 0.57
NUP88-210ENST00000574867 C11orf57Q6ZUT1 292 aaPredicted RBP18.58■□□□□ 0.57
NUP88-210ENST00000574867 TMCO2Q7Z6W1 182 aaPredicted RBP18.58■□□□□ 0.57
NUP88-210ENST00000574867 CBWD2Q8IUF1 395 aa18.58■□□□□ 0.57
NUP88-210ENST00000574867 ZNF689Q96CS4 500 aaPredicted RBP18.58■□□□□ 0.57
NUP88-210ENST00000574867 CEP63Q96MT8 703 aa18.58■□□□□ 0.57
NUP88-210ENST00000574867 DUSP9Q99956 384 aaKnown RBP18.58■□□□□ 0.57
NUP88-210ENST00000574867 MKNK1Q9BUB5 465 aa18.58■□□□□ 0.57
NUP88-210ENST00000574867 CNTN3Q9P232 1028 aa18.58■□□□□ 0.57
NUP88-210ENST00000574867 INSL6Q9Y581 213 aa18.58■□□□□ 0.57
NUP88-210ENST00000574867 PDCD11Q14690 1871 aaKnown RBP18.58■□□□□ 0.56
NUP88-210ENST00000574867 ADRB2P07550 413 aa18.58■□□□□ 0.56
NUP88-210ENST00000574867 SLC10A6Q3KNW5 377 aa18.58■□□□□ 0.56
NUP88-210ENST00000574867 XKR4Q5GH76 650 aa18.58■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms