RNA–Protein interactions for RNA: ENST00000571545.1

CIITA-207, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 3

Gene CIITA, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-207ENST00000571545 MARCH5Q9NX47 278 aa10.74□□□□□ -0.69
CIITA-207ENST00000571545 KCND2Q9NZV8 630 aa10.74□□□□□ -0.69
CIITA-207ENST00000571545 RAPGEFL1Q9UHV5 662 aa10.74□□□□□ -0.69
CIITA-207ENST00000571545 KIAA1024Q9UPX6 916 aa10.74□□□□□ -0.69
CIITA-207ENST00000571545 RBM19Q9Y4C8 960 aaKnown RBP10.74□□□□□ -0.69
CIITA-207ENST00000571545 TECTAO75443 2155 aa10.74□□□□□ -0.69
CIITA-207ENST00000571545 ZNF318Q5VUA4 2279 aa10.73□□□□□ -0.69
CIITA-207ENST00000571545 MUC6Q6W4X9 2439 aa10.73□□□□□ -0.69
CIITA-207ENST00000571545 H0YCG3 227 aa10.73□□□□□ -0.69
CIITA-207ENST00000571545 K7ERI5 159 aa10.73□□□□□ -0.69
CIITA-207ENST00000571545 C2CD2LO14523 706 aa10.73□□□□□ -0.69
CIITA-207ENST00000571545 B4GALT3O60512 393 aa10.73□□□□□ -0.69
CIITA-207ENST00000571545 TADA2AO75478 443 aa10.73□□□□□ -0.69
CIITA-207ENST00000571545 CNPP09543 421 aaKnown RBP10.73□□□□□ -0.69
CIITA-207ENST00000571545 EPCAMP16422 314 aa10.73□□□□□ -0.69
CIITA-207ENST00000571545 SCP2P22307 547 aa10.73□□□□□ -0.69
CIITA-207ENST00000571545 AKAP5P24588 427 aa10.73□□□□□ -0.69
CIITA-207ENST00000571545 AFF1P51825 1210 aaKnown RBP10.73□□□□□ -0.69
CIITA-207ENST00000571545 NUBP1P53384 320 aa10.73□□□□□ -0.69
CIITA-207ENST00000571545 YARSP54577 528 aaKnown RBP10.73□□□□□ -0.69
CIITA-207ENST00000571545 HSP90AA2PQ14568 343 aaPredicted RBP10.73□□□□□ -0.69
CIITA-207ENST00000571545 FUT10Q6P4F1 479 aa10.73□□□□□ -0.69
CIITA-207ENST00000571545 GPR149Q86SP6 731 aa10.73□□□□□ -0.69
CIITA-207ENST00000571545 C4orf32Q8N8J7 132 aa10.73□□□□□ -0.69
CIITA-207ENST00000571545 CDK5RAP3Q96JB5 506 aa10.73□□□□□ -0.69
CIITA-207ENST00000571545 UROC1Q96N76 676 aa10.73□□□□□ -0.69
CIITA-207ENST00000571545 CCDC113Q9H0I3 377 aa10.73□□□□□ -0.69
CIITA-207ENST00000571545 IRF2BPLQ9H1B7 796 aa10.73□□□□□ -0.69
CIITA-207ENST00000571545 RXFP1Q9HBX9 757 aa10.73□□□□□ -0.69
CIITA-207ENST00000571545 EIF4ENIF1Q9NRA8 985 aaKnown RBP10.73□□□□□ -0.69
CIITA-207ENST00000571545 FNIP2Q9P278 1114 aa10.73□□□□□ -0.69
CIITA-207ENST00000571545 PCDHB6Q9Y5E3 794 aa10.73□□□□□ -0.69
CIITA-207ENST00000571545 GTF3C5Q9Y5Q8 519 aaPredicted RBP10.73□□□□□ -0.69
CIITA-207ENST00000571545 MTCL1Q9Y4B5 1905 aaKnown RBP10.73□□□□□ -0.69
CIITA-207ENST00000571545 MYH11P35749 1972 aa10.73□□□□□ -0.69
CIITA-207ENST00000571545 LILRB3O75022 631 aa10.72□□□□□ -0.69
CIITA-207ENST00000571545 RECQL4O94761 1208 aa10.72□□□□□ -0.69
CIITA-207ENST00000571545 EFEMP2O95967 443 aa10.72□□□□□ -0.69
CIITA-207ENST00000571545 SMTNP53814 917 aa10.72□□□□□ -0.69
CIITA-207ENST00000571545 ATP2C1P98194 919 aaPredicted RBP10.72□□□□□ -0.69
CIITA-207ENST00000571545 ATF7IP2Q5U623 682 aa10.72□□□□□ -0.69
CIITA-207ENST00000571545 FBXL6Q8N531 539 aa10.72□□□□□ -0.69
CIITA-207ENST00000571545 GSTCDQ8NEC7 633 aa10.72□□□□□ -0.69
CIITA-207ENST00000571545 TMX3Q96JJ7 454 aa10.72□□□□□ -0.69
CIITA-207ENST00000571545 AK8Q96MA6 479 aa10.72□□□□□ -0.69
CIITA-207ENST00000571545 CCDC94Q9BW85 323 aaPredicted RBP10.72□□□□□ -0.69
CIITA-207ENST00000571545 MRPL4Q9BYD3 311 aaKnown RBP10.72□□□□□ -0.69
CIITA-207ENST00000571545 TMEM134Q9H6X4 195 aa10.72□□□□□ -0.69
CIITA-207ENST00000571545 MAN1C1Q9NR34 630 aa10.72□□□□□ -0.69
CIITA-207ENST00000571545 CHST7Q9NS84 486 aa10.72□□□□□ -0.69
CIITA-207ENST00000571545 SLC38A7Q9NVC3 462 aa10.72□□□□□ -0.69
CIITA-207ENST00000571545 ZDHHC7Q9NXF8 308 aa10.72□□□□□ -0.69
CIITA-207ENST00000571545 SMC3Q9UQE7 1217 aa10.72□□□□□ -0.69
CIITA-207ENST00000571545 TNFSF13BQ9Y275 285 aa10.72□□□□□ -0.69
CIITA-207ENST00000571545 C5orf42Q9H799 3197 aa10.72□□□□□ -0.69
CIITA-207ENST00000571545 C2orf16Q68DN1 1984 aa10.72□□□□□ -0.69
CIITA-207ENST00000571545 CCDC169A6NNP5 214 aa10.71□□□□□ -0.69
CIITA-207ENST00000571545 C2CD4DB7Z1M9 353 aa10.71□□□□□ -0.69
CIITA-207ENST00000571545 TMEM189-UBE2V1I3L0A0 370 aa10.71□□□□□ -0.69
CIITA-207ENST00000571545 TEX28O15482 410 aa10.71□□□□□ -0.69
CIITA-207ENST00000571545 TRAPPC3O43617 180 aa10.71□□□□□ -0.69
CIITA-207ENST00000571545 LIG1P18858 919 aa10.71□□□□□ -0.69
CIITA-207ENST00000571545 SP100P23497 879 aaPredicted RBP10.71□□□□□ -0.69
CIITA-207ENST00000571545 GUCY2CP25092 1073 aa10.71□□□□□ -0.69
CIITA-207ENST00000571545 GJB2P29033 226 aa10.71□□□□□ -0.69
CIITA-207ENST00000571545 ABCD1P33897 745 aa10.71□□□□□ -0.69
CIITA-207ENST00000571545 TOB1P50616 345 aaPredicted RBP10.71□□□□□ -0.69
CIITA-207ENST00000571545 PLXNA3P51805 1871 aa10.71□□□□□ -0.69
CIITA-207ENST00000571545 STRN3Q13033 797 aa10.71□□□□□ -0.69
CIITA-207ENST00000571545 NBR1Q14596 966 aa10.71□□□□□ -0.69
CIITA-207ENST00000571545 HYIQ5T013 277 aa10.71□□□□□ -0.69
CIITA-207ENST00000571545 KIAA0319Q5VV43 1072 aa10.71□□□□□ -0.69
CIITA-207ENST00000571545 TMC5Q6UXY8 1006 aa10.71□□□□□ -0.69
CIITA-207ENST00000571545 BRAPQ7Z569 592 aa10.71□□□□□ -0.69
CIITA-207ENST00000571545 CDR2LQ86X02 465 aaPredicted RBP10.71□□□□□ -0.69
CIITA-207ENST00000571545 KREMEN2Q8NCW0 462 aa10.71□□□□□ -0.69
CIITA-207ENST00000571545 BSNDQ8WZ55 320 aa10.71□□□□□ -0.69
CIITA-207ENST00000571545 TTPALQ9BTX7 342 aa10.71□□□□□ -0.69
CIITA-207ENST00000571545 KMT5AQ9NQR1 393 aa10.71□□□□□ -0.69
CIITA-207ENST00000571545 KLK14Q9P0G3 267 aa10.71□□□□□ -0.69
CIITA-207ENST00000571545 IGSF9Q9P2J2 1179 aa10.71□□□□□ -0.69
CIITA-207ENST00000571545 CITO14578 2027 aa10.7□□□□□ -0.7
CIITA-207ENST00000571545 KMT2EQ8IZD2 1858 aa10.7□□□□□ -0.7
CIITA-207ENST00000571545 CLUHO75153 1309 aa10.7□□□□□ -0.7
CIITA-207ENST00000571545 A0A087WWV3 80 aa10.7□□□□□ -0.7
CIITA-207ENST00000571545 HIP1RO75146 1068 aa10.7□□□□□ -0.7
CIITA-207ENST00000571545 PAPLNO95428 1278 aa10.7□□□□□ -0.7
CIITA-207ENST00000571545 PDCP20941 246 aa10.7□□□□□ -0.7
CIITA-207ENST00000571545 GRM5P41594 1212 aa10.7□□□□□ -0.7
CIITA-207ENST00000571545 NPTX2P47972 431 aa10.7□□□□□ -0.7
CIITA-207ENST00000571545 PTPN5P54829 565 aa10.7□□□□□ -0.7
CIITA-207ENST00000571545 PEX3P56589 373 aa10.7□□□□□ -0.7
CIITA-207ENST00000571545 ZNF568Q3ZCX4 644 aa10.7□□□□□ -0.7
CIITA-207ENST00000571545 LIN9Q5TKA1 542 aa10.7□□□□□ -0.7
CIITA-207ENST00000571545 PDZRN4Q6ZMN7 1036 aaPredicted RBP10.7□□□□□ -0.7
CIITA-207ENST00000571545 RTL10Q7L3V2 364 aa10.7□□□□□ -0.7
CIITA-207ENST00000571545 C12orf76Q8N812 135 aaPredicted RBP10.7□□□□□ -0.7
CIITA-207ENST00000571545 RIN2Q8WYP3 895 aaPredicted RBP10.7□□□□□ -0.7
CIITA-207ENST00000571545 PIK3R5Q8WYR1 880 aa10.7□□□□□ -0.7
CIITA-207ENST00000571545 NXPE3Q969Y0 559 aa10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms