RNA–Protein interactions for RNA: ENST00000571263.2

CDRT1-206, CMT1A duplicated region transcript 1, humanhuman

TSL 1 (best)

Gene CDRT1, Length 800 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDRT1-206ENST00000571263 SAAL1Q96ER3 474 aa12.96□□□□□ -0.33
CDRT1-206ENST00000571263 PAWRQ96IZ0 340 aaKnown RBP12.96□□□□□ -0.33
CDRT1-206ENST00000571263 ACAP3Q96P50 834 aa12.96□□□□□ -0.33
CDRT1-206ENST00000571263 ERGIC2Q96RQ1 377 aa12.96□□□□□ -0.33
CDRT1-206ENST00000571263 IKZF4Q9H2S9 585 aa12.96□□□□□ -0.33
CDRT1-206ENST00000571263 ASB7Q9H672 318 aa12.96□□□□□ -0.33
CDRT1-206ENST00000571263 RPF1Q9H9Y2 349 aaKnown RBP12.96□□□□□ -0.33
CDRT1-206ENST00000571263 TOPORSQ9NS56 1045 aaPredicted RBP12.96□□□□□ -0.33
CDRT1-206ENST00000571263 RBAKQ9NYW8 714 aaPredicted RBP12.96□□□□□ -0.33
CDRT1-206ENST00000571263 PIN4Q9Y237 131 aaKnown RBP12.96□□□□□ -0.33
CDRT1-206ENST00000571263 GOLGA8IPA6NC78 632 aa12.95□□□□□ -0.34
CDRT1-206ENST00000571263 GOLGA8JA6NMD2 632 aa12.95□□□□□ -0.34
CDRT1-206ENST00000571263 AP5Z1O43299 807 aa12.95□□□□□ -0.34
CDRT1-206ENST00000571263 PQBP1O60828 265 aaKnown RBP12.95□□□□□ -0.34
CDRT1-206ENST00000571263 CSDE1O75534 798 aaKnown RBP12.95□□□□□ -0.34
CDRT1-206ENST00000571263 EDN1P05305 212 aa12.95□□□□□ -0.34
CDRT1-206ENST00000571263 RFC2P35250 354 aa12.95□□□□□ -0.34
CDRT1-206ENST00000571263 ATN1P54259 1190 aaPredicted RBP12.95□□□□□ -0.34
CDRT1-206ENST00000571263 TLE2Q04725 743 aa12.95□□□□□ -0.34
CDRT1-206ENST00000571263 NFX1Q12986 1120 aaKnown RBP12.95□□□□□ -0.34
CDRT1-206ENST00000571263 LPIN1Q14693 890 aa12.95□□□□□ -0.34
CDRT1-206ENST00000571263 DCAF17Q5H9S7 520 aaPredicted RBP12.95□□□□□ -0.34
CDRT1-206ENST00000571263 SPECC1LQ69YQ0 1117 aa12.95□□□□□ -0.34
CDRT1-206ENST00000571263 SMYD5Q6GMV2 418 aa12.95□□□□□ -0.34
CDRT1-206ENST00000571263 CRELD2Q6UXH1 353 aaPredicted RBP12.95□□□□□ -0.34
CDRT1-206ENST00000571263 VSTM4Q8IW00 320 aa12.95□□□□□ -0.34
CDRT1-206ENST00000571263 CACTINQ8WUQ7 758 aaKnown RBP12.95□□□□□ -0.34
CDRT1-206ENST00000571263 CPB2Q96IY4 423 aa12.95□□□□□ -0.34
CDRT1-206ENST00000571263 PDLIM2Q96JY6 352 aa12.95□□□□□ -0.34
CDRT1-206ENST00000571263 PPP1R9BQ96SB3 815 aa12.95□□□□□ -0.34
CDRT1-206ENST00000571263 EDEM3Q9BZQ6 932 aa12.95□□□□□ -0.34
CDRT1-206ENST00000571263 ERVK-5Q9HDB9 667 aa12.95□□□□□ -0.34
CDRT1-206ENST00000571263 UBN1Q9NPG3 1134 aa12.95□□□□□ -0.34
CDRT1-206ENST00000571263 PADI3Q9ULW8 664 aa12.95□□□□□ -0.34
CDRT1-206ENST00000571263 TTLL13PA6NNM8 815 aa12.94□□□□□ -0.34
CDRT1-206ENST00000571263 FAM189A1O60320 539 aa12.94□□□□□ -0.34
CDRT1-206ENST00000571263 ZNF623O75123 536 aa12.94□□□□□ -0.34
CDRT1-206ENST00000571263 ADRB2P07550 413 aa12.94□□□□□ -0.34
CDRT1-206ENST00000571263 CLTBP09497 229 aa12.94□□□□□ -0.34
CDRT1-206ENST00000571263 STAG3L1P0CL83 205 aa12.94□□□□□ -0.34
CDRT1-206ENST00000571263 ACOT2P49753 483 aa12.94□□□□□ -0.34
CDRT1-206ENST00000571263 FAAP100Q0VG06 881 aa12.94□□□□□ -0.34
CDRT1-206ENST00000571263 TRIM60Q495X7 471 aa12.94□□□□□ -0.34
CDRT1-206ENST00000571263 FIGNQ5HY92 759 aa12.94□□□□□ -0.34
CDRT1-206ENST00000571263 EEF1DP3Q658K8 133 aa12.94□□□□□ -0.34
CDRT1-206ENST00000571263 KRT39Q6A163 491 aa12.94□□□□□ -0.34
CDRT1-206ENST00000571263 TWF2Q6IBS0 349 aaKnown RBP12.94□□□□□ -0.34
CDRT1-206ENST00000571263 GBP6Q6ZN66 633 aa12.94□□□□□ -0.34
CDRT1-206ENST00000571263 WDR49Q8IV35 697 aa12.94□□□□□ -0.34
CDRT1-206ENST00000571263 THNSL1Q8IYQ7 743 aa12.94□□□□□ -0.34
CDRT1-206ENST00000571263 PGBD4Q96DM1 585 aa12.94□□□□□ -0.34
CDRT1-206ENST00000571263 FAM81BQ96LP2 452 aa12.94□□□□□ -0.34
CDRT1-206ENST00000571263 HAPLN2Q9GZV7 340 aa12.94□□□□□ -0.34
CDRT1-206ENST00000571263 HIPK3Q9H422 1215 aa12.94□□□□□ -0.34
CDRT1-206ENST00000571263 TMEM8AQ9HCN3 771 aa12.94□□□□□ -0.34
CDRT1-206ENST00000571263 TMEM39AQ9NV64 488 aa12.94□□□□□ -0.34
CDRT1-206ENST00000571263 DERAQ9Y315 318 aa12.94□□□□□ -0.34
CDRT1-206ENST00000571263 TRIP12Q14669 1992 aaPredicted RBP12.94□□□□□ -0.34
CDRT1-206ENST00000571263 NPTXRO95502 500 aa12.93□□□□□ -0.34
CDRT1-206ENST00000571263 HARSP12081 509 aaKnown RBP12.93□□□□□ -0.34
CDRT1-206ENST00000571263 TNNI1P19237 187 aa12.93□□□□□ -0.34
CDRT1-206ENST00000571263 FGFR4P22455 802 aa12.93□□□□□ -0.34
CDRT1-206ENST00000571263 FMO5P49326 533 aa12.93□□□□□ -0.34
CDRT1-206ENST00000571263 GSDMDP57764 484 aa12.93□□□□□ -0.34
CDRT1-206ENST00000571263 DUOXA2Q1HG44 320 aa12.93□□□□□ -0.34
CDRT1-206ENST00000571263 TRAF7Q6Q0C0 670 aa12.93□□□□□ -0.34
CDRT1-206ENST00000571263 PPFIBP1Q86W92 1011 aa12.93□□□□□ -0.34
CDRT1-206ENST00000571263 DIS3LQ8TF46 1054 aaKnown RBP12.93□□□□□ -0.34
CDRT1-206ENST00000571263 RSPH1Q8WYR4 309 aa12.93□□□□□ -0.34
CDRT1-206ENST00000571263 SEPT8Q92599 483 aa12.93□□□□□ -0.34
CDRT1-206ENST00000571263 CCDC127Q96BQ5 260 aa12.93□□□□□ -0.34
CDRT1-206ENST00000571263 PCMTD1Q96MG8 357 aaPredicted RBP12.93□□□□□ -0.34
CDRT1-206ENST00000571263 CGRRF1Q99675 332 aa12.93□□□□□ -0.34
CDRT1-206ENST00000571263 C1orf112Q9NSG2 853 aa12.93□□□□□ -0.34
CDRT1-206ENST00000571263 ATP11BQ9Y2G3 1177 aa12.93□□□□□ -0.34
CDRT1-206ENST00000571263 USP20Q9Y2K6 914 aa12.93□□□□□ -0.34
CDRT1-206ENST00000571263 A0A0U1RQF3 1178 aa12.92□□□□□ -0.34
CDRT1-206ENST00000571263 TEX33O43247 280 aa12.92□□□□□ -0.34
CDRT1-206ENST00000571263 XPOTO43592 962 aaKnown RBP12.92□□□□□ -0.34
CDRT1-206ENST00000571263 ZC3H11AO75152 810 aaKnown RBP eCLIP12.92□□□□□ -0.34
CDRT1-206ENST00000571263 EOMESO95936 686 aa12.92□□□□□ -0.34
CDRT1-206ENST00000571263 TNNC2P02585 160 aa12.92□□□□□ -0.34
CDRT1-206ENST00000571263 GHRP10912 638 aa12.92□□□□□ -0.34
CDRT1-206ENST00000571263 RFX1P22670 979 aa12.92□□□□□ -0.34
CDRT1-206ENST00000571263 CD52P31358 61 aa12.92□□□□□ -0.34
CDRT1-206ENST00000571263 PBX1P40424 430 aa12.92□□□□□ -0.34
CDRT1-206ENST00000571263 DSC3Q14574 896 aa12.92□□□□□ -0.34
CDRT1-206ENST00000571263 EXOC3L4Q17RC7 722 aa12.92□□□□□ -0.34
CDRT1-206ENST00000571263 MRPL10Q7Z7H8 261 aaKnown RBP12.92□□□□□ -0.34
CDRT1-206ENST00000571263 FMNL3Q8IVF7 1028 aa12.92□□□□□ -0.34
CDRT1-206ENST00000571263 CCDC150Q8NCX0 1101 aa12.92□□□□□ -0.34
CDRT1-206ENST00000571263 ZNF397Q8NF99 534 aaPredicted RBP12.92□□□□□ -0.34
CDRT1-206ENST00000571263 NEK11Q8NG66 645 aa12.92□□□□□ -0.34
CDRT1-206ENST00000571263 ANKRD36BP1Q96IX9 119 aa12.92□□□□□ -0.34
CDRT1-206ENST00000571263 IFIH1Q9BYX4 1025 aaKnown RBP12.92□□□□□ -0.34
CDRT1-206ENST00000571263 AGO3Q9H9G7 860 aaKnown RBP12.92□□□□□ -0.34
CDRT1-206ENST00000571263 PLCB1Q9NQ66 1216 aa12.92□□□□□ -0.34
CDRT1-206ENST00000571263 FAM105AQ9NUU6 356 aa12.92□□□□□ -0.34
CDRT1-206ENST00000571263 TBX21Q9UL17 535 aa12.92□□□□□ -0.34
CDRT1-206ENST00000571263 COQ4Q9Y3A0 265 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms