RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 ARL13BQ3SXY8 428 aa16.29■□□□□ 0.2
CIITA-204ENST00000570546 ADGRA1Q86SQ6 560 aa16.29■□□□□ 0.2
CIITA-204ENST00000570546 CYFIP2Q96F07 1278 aa16.29■□□□□ 0.2
CIITA-204ENST00000570546 NUDCD1Q96RS6 583 aa16.29■□□□□ 0.2
CIITA-204ENST00000570546 SEMA6BQ9H3T3 888 aa16.29■□□□□ 0.2
CIITA-204ENST00000570546 ANKZF1Q9H8Y5 726 aa16.29■□□□□ 0.2
CIITA-204ENST00000570546 STOML1Q9UBI4 398 aa16.29■□□□□ 0.2
CIITA-204ENST00000570546 CAPN6Q9Y6Q1 641 aa16.29■□□□□ 0.2
CIITA-204ENST00000570546 AP3M2P53677 418 aa16.29■□□□□ 0.2
CIITA-204ENST00000570546 NT5DC1Q5TFE4 455 aa16.29■□□□□ 0.2
CIITA-204ENST00000570546 HHIPL2Q6UWX4 724 aa16.29■□□□□ 0.2
CIITA-204ENST00000570546 MKNK1Q9BUB5 465 aa16.29■□□□□ 0.2
CIITA-204ENST00000570546 EFHD1Q9BUP0 239 aa16.29■□□□□ 0.2
CIITA-204ENST00000570546 C2orf40Q9H1Z8 148 aa16.29■□□□□ 0.2
CIITA-204ENST00000570546 PRR12Q9ULL5 1215 aa16.29■□□□□ 0.2
CIITA-204ENST00000570546 COMTP21964 271 aa16.29■□□□□ 0.2
CIITA-204ENST00000570546 SNRNP35Q16560 246 aaKnown RBP16.29■□□□□ 0.2
CIITA-204ENST00000570546 PTGISQ16647 500 aa16.29■□□□□ 0.2
CIITA-204ENST00000570546 FIGNQ5HY92 759 aa16.29■□□□□ 0.2
CIITA-204ENST00000570546 LRRC31Q6UY01 552 aa16.29■□□□□ 0.2
CIITA-204ENST00000570546 RHPN2Q8IUC4 686 aa16.29■□□□□ 0.2
CIITA-204ENST00000570546 TPCN2Q8NHX9 752 aa16.29■□□□□ 0.2
CIITA-204ENST00000570546 WRNIP1Q96S55 665 aa16.29■□□□□ 0.2
CIITA-204ENST00000570546 FAF1Q9UNN5 650 aaPredicted RBP16.29■□□□□ 0.2
CIITA-204ENST00000570546 SPATA31A1Q5TZJ5 1347 aa16.29■□□□□ 0.2
CIITA-204ENST00000570546 PPP4CP60510 307 aa16.29■□□□□ 0.2
CIITA-204ENST00000570546 PDE1CQ14123 709 aaPredicted RBP16.29■□□□□ 0.2
CIITA-204ENST00000570546 INTS5Q6P9B9 1019 aaKnown RBP16.29■□□□□ 0.2
CIITA-204ENST00000570546 TRIM65Q6PJ69 517 aa16.29■□□□□ 0.2
CIITA-204ENST00000570546 RCOR2Q8IZ40 523 aa16.29■□□□□ 0.2
CIITA-204ENST00000570546 PDZD8Q8NEN9 1154 aa16.29■□□□□ 0.2
CIITA-204ENST00000570546 SH2D3AQ9BRG2 576 aa16.29■□□□□ 0.2
CIITA-204ENST00000570546 TRABDQ9H4I3 376 aa16.29■□□□□ 0.2
CIITA-204ENST00000570546 TRPA1O75762 1119 aa16.28■□□□□ 0.2
CIITA-204ENST00000570546 S100BP04271 92 aaPredicted RBP16.28■□□□□ 0.2
CIITA-204ENST00000570546 HIF1AQ16665 826 aa16.28■□□□□ 0.2
CIITA-204ENST00000570546 P3H1Q32P28 736 aa16.28■□□□□ 0.2
CIITA-204ENST00000570546 ERP44Q9BS26 406 aa16.28■□□□□ 0.2
CIITA-204ENST00000570546 GOLGA8CPA6NN73 597 aa16.28■□□□□ 0.2
CIITA-204ENST00000570546 PRLRP16471 622 aa16.28■□□□□ 0.2
CIITA-204ENST00000570546 SDC4P31431 198 aa16.28■□□□□ 0.2
CIITA-204ENST00000570546 SEC24CP53992 1094 aa16.28■□□□□ 0.2
CIITA-204ENST00000570546 SPP2Q13103 211 aa16.28■□□□□ 0.2
CIITA-204ENST00000570546 RSPH3Q86UC2 560 aa16.28■□□□□ 0.2
CIITA-204ENST00000570546 ANKMY2Q8IV38 441 aa16.28■□□□□ 0.2
CIITA-204ENST00000570546 HIPK4Q8NE63 616 aa16.28■□□□□ 0.2
CIITA-204ENST00000570546 AP5M1Q9H0R1 490 aa16.28■□□□□ 0.2
CIITA-204ENST00000570546 HSD17B3P37058 310 aa16.28■□□□□ 0.2
CIITA-204ENST00000570546 TBX2Q13207 712 aaPredicted RBP16.28■□□□□ 0.2
CIITA-204ENST00000570546 GRAMD1BQ3KR37 738 aa16.28■□□□□ 0.2
CIITA-204ENST00000570546 BBS5Q8N3I7 341 aa16.28■□□□□ 0.2
CIITA-204ENST00000570546 FAM205AQ6ZU69 1335 aa16.28■□□□□ 0.2
CIITA-204ENST00000570546 H3BQF6 201 aa16.28■□□□□ 0.2
CIITA-204ENST00000570546 SENP1Q9P0U3 644 aa16.28■□□□□ 0.2
CIITA-204ENST00000570546 ALG6Q9Y672 507 aa16.28■□□□□ 0.2
CIITA-204ENST00000570546 IREB2P48200 963 aaKnown RBP16.27■□□□□ 0.2
CIITA-204ENST00000570546 CORO7P57737 925 aa16.27■□□□□ 0.2
CIITA-204ENST00000570546 NOP14P78316 857 aaKnown RBP16.27■□□□□ 0.2
CIITA-204ENST00000570546 TAF1BQ53T94 588 aaPredicted RBP16.27■□□□□ 0.2
CIITA-204ENST00000570546 STRIP1Q5VSL9 837 aa16.27■□□□□ 0.2
CIITA-204ENST00000570546 FAM96AQ9H5X1 160 aa16.27■□□□□ 0.2
CIITA-204ENST00000570546 KLHL8Q9P2G9 620 aaPredicted RBP16.27■□□□□ 0.2
CIITA-204ENST00000570546 PI4K2BG5E9Z4 385 aa16.27■□□□□ 0.2
CIITA-204ENST00000570546 MX2P20592 715 aa16.27■□□□□ 0.2
CIITA-204ENST00000570546 C1orf146Q5VVC0 180 aa16.27■□□□□ 0.2
CIITA-204ENST00000570546 CATSPER4Q7RTX7 472 aa16.27■□□□□ 0.2
CIITA-204ENST00000570546 ST13P4Q8IZP2 240 aaPredicted RBP16.27■□□□□ 0.2
CIITA-204ENST00000570546 TMEM117Q9H0C3 514 aa16.27■□□□□ 0.2
CIITA-204ENST00000570546 ACAD9Q9H845 621 aa16.27■□□□□ 0.2
CIITA-204ENST00000570546 USP15Q9Y4E8 981 aaPredicted RBP16.27■□□□□ 0.2
CIITA-204ENST00000570546 A0A087X0T9 212 aa16.27■□□□□ 0.2
CIITA-204ENST00000570546 FAM228BP0C875 321 aa16.27■□□□□ 0.2
CIITA-204ENST00000570546 CASP2P42575 452 aa16.27■□□□□ 0.2
CIITA-204ENST00000570546 FSCBQ5H9T9 825 aa16.27■□□□□ 0.2
CIITA-204ENST00000570546 KDM7AQ6ZMT4 941 aa16.27■□□□□ 0.2
CIITA-204ENST00000570546 LACRTQ9GZZ8 138 aa16.27■□□□□ 0.2
CIITA-204ENST00000570546 RPAP3Q9H6T3 665 aaPredicted RBP16.27■□□□□ 0.2
CIITA-204ENST00000570546 ATP8B3O60423 1300 aa16.27■□□□□ 0.19
CIITA-204ENST00000570546 SPDYE16A6NNV3 312 aaPredicted RBP16.27■□□□□ 0.19
CIITA-204ENST00000570546 ATMINO43313 823 aaPredicted RBP16.27■□□□□ 0.19
CIITA-204ENST00000570546 FAM107AO95990 144 aa16.27■□□□□ 0.19
CIITA-204ENST00000570546 CYP11B2P19099 503 aa16.27■□□□□ 0.19
CIITA-204ENST00000570546 SPDYE2Q495Y8 402 aa16.27■□□□□ 0.19
CIITA-204ENST00000570546 SPOUT1Q5T280 376 aaKnown RBP16.27■□□□□ 0.19
CIITA-204ENST00000570546 FAM102AQ5T9C2 384 aaPredicted RBP16.27■□□□□ 0.19
CIITA-204ENST00000570546 IL17RAQ96F46 866 aa16.27■□□□□ 0.19
CIITA-204ENST00000570546 RBM15Q96T37 977 aaKnown RBP eCLIP16.27■□□□□ 0.19
CIITA-204ENST00000570546 POLR3CQ9BUI4 534 aaPredicted RBP16.27■□□□□ 0.19
CIITA-204ENST00000570546 FAM49AQ9H0Q0 323 aaPredicted RBP16.27■□□□□ 0.19
CIITA-204ENST00000570546 VPS11Q9H270 941 aa16.27■□□□□ 0.19
CIITA-204ENST00000570546 SMYD3Q9H7B4 428 aa16.27■□□□□ 0.19
CIITA-204ENST00000570546 JPH1Q9HDC5 661 aaPredicted RBP16.27■□□□□ 0.19
CIITA-204ENST00000570546 CFAP69A5D8W1 941 aa16.26■□□□□ 0.19
CIITA-204ENST00000570546 KIAA0391O15091 583 aaKnown RBP16.26■□□□□ 0.19
CIITA-204ENST00000570546 PON1P27169 355 aa16.26■□□□□ 0.19
CIITA-204ENST00000570546 RFC1P35251 1148 aaPredicted RBP16.26■□□□□ 0.19
CIITA-204ENST00000570546 DUOXA2Q1HG44 320 aa16.26■□□□□ 0.19
CIITA-204ENST00000570546 C1orf228Q6PIY5 440 aa16.26■□□□□ 0.19
CIITA-204ENST00000570546 KCTD17Q8N5Z5 321 aa16.26■□□□□ 0.19
CIITA-204ENST00000570546 SENP7Q9BQF6 1050 aa16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms