RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 TANGO2Q6ICL3 276 aa20.24■□□□□ 0.83
CLK3-227ENST00000570296 PRSS55Q6UWB4 352 aaPredicted RBP20.24■□□□□ 0.83
CLK3-227ENST00000570296 RTL10Q7L3V2 364 aa20.24■□□□□ 0.83
CLK3-227ENST00000570296 KSR1Q8IVT5 923 aa20.24■□□□□ 0.83
CLK3-227ENST00000570296 GATA6Q92908 595 aa20.24■□□□□ 0.83
CLK3-227ENST00000570296 IRF7Q92985 503 aa20.24■□□□□ 0.83
CLK3-227ENST00000570296 CLSTN3Q9BQT9 956 aa20.24■□□□□ 0.83
CLK3-227ENST00000570296 HCFC1R1Q9NWW0 138 aa20.24■□□□□ 0.83
CLK3-227ENST00000570296 DNMT3BQ9UBC3 853 aaKnown RBP20.24■□□□□ 0.83
CLK3-227ENST00000570296 SF3B1O75533 1304 aaKnown RBP eCLIP20.24■□□□□ 0.83
CLK3-227ENST00000570296 AXIN1O15169 862 aa20.23■□□□□ 0.83
CLK3-227ENST00000570296 PRC1O43663 620 aa20.23■□□□□ 0.83
CLK3-227ENST00000570296 MAFO75444 373 aaPredicted RBP20.23■□□□□ 0.83
CLK3-227ENST00000570296 HOXA6P31267 233 aa20.23■□□□□ 0.83
CLK3-227ENST00000570296 LIFRP42702 1097 aa20.23■□□□□ 0.83
CLK3-227ENST00000570296 SCNN1GP51170 649 aa20.23■□□□□ 0.83
CLK3-227ENST00000570296 NOVA1P51513 510 aaKnown RBP20.23■□□□□ 0.83
CLK3-227ENST00000570296 FOXC1Q12948 553 aa20.23■□□□□ 0.83
CLK3-227ENST00000570296 PRR16Q569H4 304 aa20.23■□□□□ 0.83
CLK3-227ENST00000570296 JAKMIP3Q5VZ66 844 aa20.23■□□□□ 0.83
CLK3-227ENST00000570296 SRGAP1Q7Z6B7 1085 aa20.23■□□□□ 0.83
CLK3-227ENST00000570296 SLC7A14Q8TBB6 771 aa20.23■□□□□ 0.83
CLK3-227ENST00000570296 ZCCHC14Q8WYQ9 949 aaKnown RBP20.23■□□□□ 0.83
CLK3-227ENST00000570296 PIK3R5Q8WYR1 880 aa20.23■□□□□ 0.83
CLK3-227ENST00000570296 MCRS1Q96EZ8 462 aa20.23■□□□□ 0.83
CLK3-227ENST00000570296 TMEM87BQ96K49 555 aa20.23■□□□□ 0.83
CLK3-227ENST00000570296 JPH2Q9BR39 696 aaPredicted RBP20.23■□□□□ 0.83
CLK3-227ENST00000570296 BARHL2Q9NY43 387 aa20.23■□□□□ 0.83
CLK3-227ENST00000570296 IPPQ9Y573 584 aa20.23■□□□□ 0.83
CLK3-227ENST00000570296 SLC12A7Q9Y666 1083 aa20.23■□□□□ 0.83
CLK3-227ENST00000570296 PIAS3Q9Y6X2 628 aa20.23■□□□□ 0.83
CLK3-227ENST00000570296 CNTNAP5Q8WYK1 1306 aa20.23■□□□□ 0.83
CLK3-227ENST00000570296 PTH1RQ03431 593 aa20.22■□□□□ 0.83
CLK3-227ENST00000570296 PTGDRQ13258 359 aa20.22■□□□□ 0.83
CLK3-227ENST00000570296 AXDND1Q5T1B0 1012 aaPredicted RBP20.22■□□□□ 0.83
CLK3-227ENST00000570296 HEATR6Q6AI08 1181 aaKnown RBP20.22■□□□□ 0.83
CLK3-227ENST00000570296 WDR5BQ86VZ2 330 aa20.22■□□□□ 0.83
CLK3-227ENST00000570296 ZFP42Q96MM3 310 aa20.22■□□□□ 0.83
CLK3-227ENST00000570296 TTPALQ9BTX7 342 aa20.22■□□□□ 0.83
CLK3-227ENST00000570296 TRMT61BQ9BVS5 477 aaKnown RBP20.22■□□□□ 0.83
CLK3-227ENST00000570296 AVENQ9NQS1 362 aaPredicted RBP20.22■□□□□ 0.83
CLK3-227ENST00000570296 MIOSQ9NXC5 875 aa20.22■□□□□ 0.83
CLK3-227ENST00000570296 LAMA5O15230 3695 aa20.21■□□□□ 0.83
CLK3-227ENST00000570296 TADA2AO75478 443 aa20.21■□□□□ 0.83
CLK3-227ENST00000570296 FCARP24071 287 aa20.21■□□□□ 0.83
CLK3-227ENST00000570296 RAP1GAPP47736 663 aa20.21■□□□□ 0.83
CLK3-227ENST00000570296 ZNF252P-AS1Q0IIN9 211 aa20.21■□□□□ 0.83
CLK3-227ENST00000570296 LRRC32Q14392 662 aa20.21■□□□□ 0.83
CLK3-227ENST00000570296 CCDC6Q16204 474 aa20.21■□□□□ 0.83
CLK3-227ENST00000570296 PSMD5Q16401 504 aa20.21■□□□□ 0.83
CLK3-227ENST00000570296 PLA2G2CQ5R387 149 aa20.21■□□□□ 0.83
CLK3-227ENST00000570296 RNF43Q68DV7 783 aa20.21■□□□□ 0.83
CLK3-227ENST00000570296 MAP4K3Q8IVH8 894 aa20.21■□□□□ 0.83
CLK3-227ENST00000570296 RIT2Q99578 217 aa20.21■□□□□ 0.83
CLK3-227ENST00000570296 RNF39Q9H2S5 420 aa20.21■□□□□ 0.83
CLK3-227ENST00000570296 PCDHGA5Q9Y5G8 931 aa20.21■□□□□ 0.83
CLK3-227ENST00000570296 COL4A3BPQ9Y5P4 624 aa20.21■□□□□ 0.83
CLK3-227ENST00000570296 PDCD11Q14690 1871 aaKnown RBP20.21■□□□□ 0.83
CLK3-227ENST00000570296 LOC400499M0QZD8 3231 aa20.2■□□□□ 0.82
CLK3-227ENST00000570296 STBD1O95210 358 aa20.2■□□□□ 0.82
CLK3-227ENST00000570296 CIITAP33076 1130 aa20.2■□□□□ 0.82
CLK3-227ENST00000570296 MCM5P33992 734 aa20.2■□□□□ 0.82
CLK3-227ENST00000570296 MLLT6P55198 1093 aaPredicted RBP20.2■□□□□ 0.82
CLK3-227ENST00000570296 GRM2Q14416 872 aa20.2■□□□□ 0.82
CLK3-227ENST00000570296 PDXDC1Q6P996 788 aa20.2■□□□□ 0.82
CLK3-227ENST00000570296 C1orf228Q6PIY5 440 aa20.2■□□□□ 0.82
CLK3-227ENST00000570296 RAB11FIP4Q86YS3 637 aa20.2■□□□□ 0.82
CLK3-227ENST00000570296 RDM1Q8NG50 284 aa20.2■□□□□ 0.82
CLK3-227ENST00000570296 LNX1Q8TBB1 728 aaPredicted RBP20.2■□□□□ 0.82
CLK3-227ENST00000570296 LENG9Q96B70 501 aa20.2■□□□□ 0.82
CLK3-227ENST00000570296 CCDC51Q96ER9 411 aa20.2■□□□□ 0.82
CLK3-227ENST00000570296 MINDY3Q9H8M7 445 aa20.2■□□□□ 0.82
CLK3-227ENST00000570296 ZFP14Q9HCL3 533 aa20.2■□□□□ 0.82
CLK3-227ENST00000570296 ZNF334Q9HCZ1 680 aaPredicted RBP20.2■□□□□ 0.82
CLK3-227ENST00000570296 GIT1Q9Y2X7 761 aa20.2■□□□□ 0.82
CLK3-227ENST00000570296 TMEM150BA6NC51 233 aa20.19■□□□□ 0.82
CLK3-227ENST00000570296 RHOP08100 348 aa20.19■□□□□ 0.82
CLK3-227ENST00000570296 SPINK2P20155 84 aa20.19■□□□□ 0.82
CLK3-227ENST00000570296 SLC5A9Q2M3M2 681 aa20.19■□□□□ 0.82
CLK3-227ENST00000570296 CACNA2D4Q7Z3S7 1137 aa20.19■□□□□ 0.82
CLK3-227ENST00000570296 MSANTD3Q96H12 275 aa20.19■□□□□ 0.82
CLK3-227ENST00000570296 ZMYM2Q9UBW7 1377 aa20.19■□□□□ 0.82
CLK3-227ENST00000570296 VWA8A3KMH1 1905 aa20.18■□□□□ 0.82
CLK3-227ENST00000570296 GIPC1O14908 333 aa20.18■□□□□ 0.82
CLK3-227ENST00000570296 CHMP2AO43633 222 aa20.18■□□□□ 0.82
CLK3-227ENST00000570296 GAS7O60861 476 aa20.18■□□□□ 0.82
CLK3-227ENST00000570296 GRIK3Q13003 919 aa20.18■□□□□ 0.82
CLK3-227ENST00000570296 RAB33AQ14088 237 aa20.18■□□□□ 0.82
CLK3-227ENST00000570296 POTEHQ6S545 545 aa20.18■□□□□ 0.82
CLK3-227ENST00000570296 MICU3Q86XE3 530 aa20.18■□□□□ 0.82
CLK3-227ENST00000570296 GAB3Q8WWW8 586 aa20.18■□□□□ 0.82
CLK3-227ENST00000570296 SH2D3AQ9BRG2 576 aa20.18■□□□□ 0.82
CLK3-227ENST00000570296 EIF2AQ9BY44 585 aaKnown RBP20.18■□□□□ 0.82
CLK3-227ENST00000570296 VPS45Q9NRW7 570 aa20.18■□□□□ 0.82
CLK3-227ENST00000570296 CEBPBP17676 345 aa20.17■□□□□ 0.82
CLK3-227ENST00000570296 PSMC3P17980 439 aa20.17■□□□□ 0.82
CLK3-227ENST00000570296 AXLP30530 894 aa20.17■□□□□ 0.82
CLK3-227ENST00000570296 HSP90AA2PQ14568 343 aaPredicted RBP20.17■□□□□ 0.82
CLK3-227ENST00000570296 PCBP1Q15365 356 aaKnown RBP eCLIP20.17■□□□□ 0.82
CLK3-227ENST00000570296 HACE1Q8IYU2 909 aa20.17■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms