RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 FAXDC2Q96IV6 333 aa8.65□□□□□ -1.02
VPS39-213ENST00000570062 C16orf70Q9BSU1 422 aa8.65□□□□□ -1.02
VPS39-213ENST00000570062 LSM14BQ9BX40 385 aaKnown RBP8.65□□□□□ -1.02
VPS39-213ENST00000570062 SEZ6LQ9BYH1 1024 aa8.65□□□□□ -1.02
VPS39-213ENST00000570062 STK33Q9BYT3 514 aa8.65□□□□□ -1.02
VPS39-213ENST00000570062 FZD8Q9H461 694 aa8.65□□□□□ -1.02
VPS39-213ENST00000570062 HAUS4Q9H6D7 363 aa8.65□□□□□ -1.02
VPS39-213ENST00000570062 TMEM8AQ9HCN3 771 aa8.65□□□□□ -1.02
VPS39-213ENST00000570062 RRAGDQ9NQL2 400 aaPredicted RBP8.65□□□□□ -1.02
VPS39-213ENST00000570062 AGO2Q9UKV8 859 aaKnown RBP8.65□□□□□ -1.02
VPS39-213ENST00000570062 GNEQ9Y223 722 aaKnown RBP8.65□□□□□ -1.02
VPS39-213ENST00000570062 PPP2R2CQ9Y2T4 447 aa8.65□□□□□ -1.02
VPS39-213ENST00000570062 GTF3C5Q9Y5Q8 519 aaPredicted RBP8.65□□□□□ -1.02
VPS39-213ENST00000570062 ZNF236Q9UL36 1845 aa8.65□□□□□ -1.02
VPS39-213ENST00000570062 ATP8B3O60423 1300 aa8.64□□□□□ -1.03
VPS39-213ENST00000570062 A0A0B4J269 797 aa8.64□□□□□ -1.03
VPS39-213ENST00000570062 ST8SIA5O15466 376 aa8.64□□□□□ -1.03
VPS39-213ENST00000570062 KRT86O43790 486 aa8.64□□□□□ -1.03
VPS39-213ENST00000570062 SORBS3O60504 671 aa8.64□□□□□ -1.03
VPS39-213ENST00000570062 MSCO60682 206 aa8.64□□□□□ -1.03
VPS39-213ENST00000570062 NDUFA10O95299 355 aa8.64□□□□□ -1.03
VPS39-213ENST00000570062 C22orf31O95567 290 aa8.64□□□□□ -1.03
VPS39-213ENST00000570062 F2P00734 622 aa8.64□□□□□ -1.03
VPS39-213ENST00000570062 PON1P27169 355 aa8.64□□□□□ -1.03
VPS39-213ENST00000570062 MARK3P27448 753 aa8.64□□□□□ -1.03
VPS39-213ENST00000570062 MATR3P43243 847 aaKnown RBP eCLIP8.64□□□□□ -1.03
VPS39-213ENST00000570062 CASP4P49662 377 aa8.64□□□□□ -1.03
VPS39-213ENST00000570062 MXI1P50539 228 aa8.64□□□□□ -1.03
VPS39-213ENST00000570062 MFAP3P55082 362 aa8.64□□□□□ -1.03
VPS39-213ENST00000570062 PTENP60484 403 aa8.64□□□□□ -1.03
VPS39-213ENST00000570062 POLR2FP61218 127 aaKnown RBP8.64□□□□□ -1.03
VPS39-213ENST00000570062 ETF1P62495 437 aaKnown RBP8.64□□□□□ -1.03
VPS39-213ENST00000570062 CLDN10P78369 228 aa8.64□□□□□ -1.03
VPS39-213ENST00000570062 CAPSQ13938 189 aa8.64□□□□□ -1.03
VPS39-213ENST00000570062 PSMD6Q15008 389 aa8.64□□□□□ -1.03
VPS39-213ENST00000570062 ASIC2Q16515 512 aa8.64□□□□□ -1.03
VPS39-213ENST00000570062 ARHGAP29Q52LW3 1261 aa8.64□□□□□ -1.03
VPS39-213ENST00000570062 PPP1R2P3Q6NXS1 205 aa8.64□□□□□ -1.03
VPS39-213ENST00000570062 PDXDC1Q6P996 788 aa8.64□□□□□ -1.03
VPS39-213ENST00000570062 MTHFD1LQ6UB35 978 aa8.64□□□□□ -1.03
VPS39-213ENST00000570062 TSHZ1Q6ZSZ6 1077 aa8.64□□□□□ -1.03
VPS39-213ENST00000570062 TLK2Q86UE8 772 aa8.64□□□□□ -1.03
VPS39-213ENST00000570062 CD302Q8IX05 232 aa8.64□□□□□ -1.03
VPS39-213ENST00000570062 METTL13Q8N6R0 699 aa8.64□□□□□ -1.03
VPS39-213ENST00000570062 RNF149Q8NC42 400 aa8.64□□□□□ -1.03
VPS39-213ENST00000570062 ASAP3Q8TDY4 903 aa8.64□□□□□ -1.03
VPS39-213ENST00000570062 PARD3BQ8TEW8 1205 aa8.64□□□□□ -1.03
VPS39-213ENST00000570062 BSNDQ8WZ55 320 aa8.64□□□□□ -1.03
VPS39-213ENST00000570062 DHX38Q92620 1227 aaKnown RBP8.64□□□□□ -1.03
VPS39-213ENST00000570062 COPS5Q92905 334 aa8.64□□□□□ -1.03
VPS39-213ENST00000570062 PPP1R13BQ96KQ4 1090 aa8.64□□□□□ -1.03
VPS39-213ENST00000570062 CAPNS2Q96L46 248 aa8.64□□□□□ -1.03
VPS39-213ENST00000570062 TSPAN18Q96SJ8 248 aa8.64□□□□□ -1.03
VPS39-213ENST00000570062 SH2D3AQ9BRG2 576 aa8.64□□□□□ -1.03
VPS39-213ENST00000570062 CBWD1Q9BRT8 395 aa8.64□□□□□ -1.03
VPS39-213ENST00000570062 TCHPQ9BT92 498 aa8.64□□□□□ -1.03
VPS39-213ENST00000570062 MSTO1Q9BUK6 570 aa8.64□□□□□ -1.03
VPS39-213ENST00000570062 R3HDMLQ9H3Y0 253 aa8.64□□□□□ -1.03
VPS39-213ENST00000570062 RNPEPQ9H4A4 650 aa8.64□□□□□ -1.03
VPS39-213ENST00000570062 NHEJ1Q9H9Q4 299 aaPredicted RBP8.64□□□□□ -1.03
VPS39-213ENST00000570062 POLD4Q9HCU8 107 aa8.64□□□□□ -1.03
VPS39-213ENST00000570062 AAASQ9NRG9 546 aa8.64□□□□□ -1.03
VPS39-213ENST00000570062 AGPAT5Q9NUQ2 364 aa8.64□□□□□ -1.03
VPS39-213ENST00000570062 GCNT4Q9P109 453 aa8.64□□□□□ -1.03
VPS39-213ENST00000570062 APEX2Q9UBZ4 518 aa8.64□□□□□ -1.03
VPS39-213ENST00000570062 COQ4Q9Y3A0 265 aa8.64□□□□□ -1.03
VPS39-213ENST00000570062 SMIM35A0A1B0GVV1 85 aa8.63□□□□□ -1.03
VPS39-213ENST00000570062 ZBTB42B2RXF5 422 aa8.63□□□□□ -1.03
VPS39-213ENST00000570062 OGTO15294 1046 aa8.63□□□□□ -1.03
VPS39-213ENST00000570062 AKR1B10O60218 316 aa8.63□□□□□ -1.03
VPS39-213ENST00000570062 CABYRO75952 493 aa8.63□□□□□ -1.03
VPS39-213ENST00000570062 IL18RAPO95256 599 aa8.63□□□□□ -1.03
VPS39-213ENST00000570062 LCA5LO95447 670 aa8.63□□□□□ -1.03
VPS39-213ENST00000570062 PRKCBP05771 671 aa8.63□□□□□ -1.03
VPS39-213ENST00000570062 SRGAP2CP0DJJ0 459 aa8.63□□□□□ -1.03
VPS39-213ENST00000570062 RARBP10826 455 aa8.63□□□□□ -1.03
VPS39-213ENST00000570062 ADSSP30520 456 aa8.63□□□□□ -1.03
VPS39-213ENST00000570062 AXLP30530 894 aa8.63□□□□□ -1.03
VPS39-213ENST00000570062 PRKCIP41743 596 aa8.63□□□□□ -1.03
VPS39-213ENST00000570062 RPIAP49247 311 aa8.63□□□□□ -1.03
VPS39-213ENST00000570062 CTCFP49711 727 aaPredicted RBP8.63□□□□□ -1.03
VPS39-213ENST00000570062 GPC3P51654 580 aa8.63□□□□□ -1.03
VPS39-213ENST00000570062 GJA9P57773 515 aa8.63□□□□□ -1.03
VPS39-213ENST00000570062 BPIFB4P59827 614 aa8.63□□□□□ -1.03
VPS39-213ENST00000570062 MCL1Q07820 350 aa8.63□□□□□ -1.03
VPS39-213ENST00000570062 CYP24A1Q07973 514 aa8.63□□□□□ -1.03
VPS39-213ENST00000570062 KIF5AQ12840 1032 aa8.63□□□□□ -1.03
VPS39-213ENST00000570062 PRPF4BQ13523 1007 aaKnown RBP8.63□□□□□ -1.03
VPS39-213ENST00000570062 GRIK4Q16099 956 aa8.63□□□□□ -1.03
VPS39-213ENST00000570062 IFI16Q16666 785 aaKnown RBP8.63□□□□□ -1.03
VPS39-213ENST00000570062 TMEM132AQ24JP5 1023 aa8.63□□□□□ -1.03
VPS39-213ENST00000570062 WDR44Q5JSH3 913 aa8.63□□□□□ -1.03
VPS39-213ENST00000570062 TAF2Q6P1X5 1199 aa8.63□□□□□ -1.03
VPS39-213ENST00000570062 TRIM65Q6PJ69 517 aa8.63□□□□□ -1.03
VPS39-213ENST00000570062 MPZL3Q6UWV2 235 aa8.63□□□□□ -1.03
VPS39-213ENST00000570062 RSPH3Q86UC2 560 aa8.63□□□□□ -1.03
VPS39-213ENST00000570062 NT5DC4Q86YG4 428 aa8.63□□□□□ -1.03
VPS39-213ENST00000570062 RHPN2Q8IUC4 686 aa8.63□□□□□ -1.03
VPS39-213ENST00000570062 FBXL13Q8NEE6 735 aa8.63□□□□□ -1.03
VPS39-213ENST00000570062 BAP1Q92560 729 aa8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms