RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 TRAPPC12Q8WVT3 735 aa3.43□□□□□ -1.86
VPS35-209ENST00000568642 BTN2A2Q8WVV5 523 aa3.43□□□□□ -1.86
VPS35-209ENST00000568642 SMARCC1Q92922 1105 aaPredicted RBP3.43□□□□□ -1.86
VPS35-209ENST00000568642 RILPL2Q969X0 211 aa3.43□□□□□ -1.86
VPS35-209ENST00000568642 TBC1D31Q96DN5 1066 aa3.43□□□□□ -1.86
VPS35-209ENST00000568642 MVB12AQ96EY5 273 aa3.43□□□□□ -1.86
VPS35-209ENST00000568642 HIC2Q96JB3 615 aa3.43□□□□□ -1.86
VPS35-209ENST00000568642 FGD4Q96M96 766 aa3.43□□□□□ -1.86
VPS35-209ENST00000568642 UHRF1Q96T88 793 aaPredicted RBP3.43□□□□□ -1.86
VPS35-209ENST00000568642 SORBS1Q9BX66 1292 aaKnown RBP3.43□□□□□ -1.86
VPS35-209ENST00000568642 C22orf23Q9BZE7 217 aa3.43□□□□□ -1.86
VPS35-209ENST00000568642 VPS33BQ9H267 617 aa3.43□□□□□ -1.86
VPS35-209ENST00000568642 MKS1Q9NXB0 559 aa3.43□□□□□ -1.86
VPS35-209ENST00000568642 DCAF16Q9NXF7 216 aa3.43□□□□□ -1.86
VPS35-209ENST00000568642 RNF186Q9NXI6 227 aa3.43□□□□□ -1.86
VPS35-209ENST00000568642 CCNL1Q9UK58 526 aaPredicted RBP3.43□□□□□ -1.86
VPS35-209ENST00000568642 PCOLCE2Q9UKZ9 415 aa3.43□□□□□ -1.86
VPS35-209ENST00000568642 HIF3AQ9Y2N7 669 aa3.43□□□□□ -1.86
VPS35-209ENST00000568642 ZNF451Q9Y4E5 1061 aa3.43□□□□□ -1.86
VPS35-209ENST00000568642 NCOR2Q9Y618 2525 aa3.43□□□□□ -1.86
VPS35-209ENST00000568642 ABCC6O95255 1503 aa3.43□□□□□ -1.86
VPS35-209ENST00000568642 RGPD5Q99666 1765 aa3.43□□□□□ -1.86
VPS35-209ENST00000568642 DLEC1Q9Y238 1755 aa3.43□□□□□ -1.86
VPS35-209ENST00000568642 DCHS1Q96JQ0 3298 aa3.43□□□□□ -1.86
VPS35-209ENST00000568642 NCANO14594 1321 aa3.43□□□□□ -1.86
VPS35-209ENST00000568642 TTC21AQ8NDW8 1320 aa3.43□□□□□ -1.86
VPS35-209ENST00000568642 C4BP0C0L5 1744 aa3.42□□□□□ -1.86
VPS35-209ENST00000568642 DOT1LQ8TEK3 1739 aa3.42□□□□□ -1.86
VPS35-209ENST00000568642 RIF1Q5UIP0 2472 aaKnown RBP3.42□□□□□ -1.86
VPS35-209ENST00000568642 A0A1W2PPH5 198 aa3.42□□□□□ -1.86
VPS35-209ENST00000568642 PGPEP1LA6NFU8 196 aa3.42□□□□□ -1.86
VPS35-209ENST00000568642 ZBTB42B2RXF5 422 aa3.42□□□□□ -1.86
VPS35-209ENST00000568642 RTCAO00442 366 aaKnown RBP3.42□□□□□ -1.86
VPS35-209ENST00000568642 ADAMTS3O15072 1205 aa3.42□□□□□ -1.86
VPS35-209ENST00000568642 NPC1O15118 1278 aa3.42□□□□□ -1.86
VPS35-209ENST00000568642 PLA2G6O60733 806 aa3.42□□□□□ -1.86
VPS35-209ENST00000568642 DKC1O60832 514 aaKnown RBP eCLIP3.42□□□□□ -1.86
VPS35-209ENST00000568642 ECEL1O95672 775 aa3.42□□□□□ -1.86
VPS35-209ENST00000568642 MLYCDO95822 493 aa3.42□□□□□ -1.86
VPS35-209ENST00000568642 TP53P04637 393 aaPredicted RBP3.42□□□□□ -1.86
VPS35-209ENST00000568642 ALAS1P13196 640 aa3.42□□□□□ -1.86
VPS35-209ENST00000568642 MYF5P13349 255 aa3.42□□□□□ -1.86
VPS35-209ENST00000568642 RAG1P15918 1043 aa3.42□□□□□ -1.86
VPS35-209ENST00000568642 HOXD13P35453 343 aa3.42□□□□□ -1.86
VPS35-209ENST00000568642 DEKP35659 375 aaKnown RBP3.42□□□□□ -1.86
VPS35-209ENST00000568642 SOX18P35713 384 aa3.42□□□□□ -1.86
VPS35-209ENST00000568642 HSPA7P48741 367 aa3.42□□□□□ -1.86
VPS35-209ENST00000568642 CCR5P51681 352 aa3.42□□□□□ -1.86
VPS35-209ENST00000568642 AFF1P51825 1210 aaKnown RBP3.42□□□□□ -1.86
VPS35-209ENST00000568642 RCAN1P53805 252 aa3.42□□□□□ -1.86
VPS35-209ENST00000568642 ATXN1P54253 815 aaKnown RBP3.42□□□□□ -1.86
VPS35-209ENST00000568642 HTRA4P83105 476 aaPredicted RBP3.42□□□□□ -1.86
VPS35-209ENST00000568642 SMAD3P84022 425 aaKnown RBP3.42□□□□□ -1.86
VPS35-209ENST00000568642 IFIT5Q13325 482 aaKnown RBP3.42□□□□□ -1.86
VPS35-209ENST00000568642 SCARB2Q14108 478 aa3.42□□□□□ -1.86
VPS35-209ENST00000568642 BECN1Q14457 450 aa3.42□□□□□ -1.86
VPS35-209ENST00000568642 CNN3Q15417 329 aaKnown RBP3.42□□□□□ -1.86
VPS35-209ENST00000568642 SMAD2Q15796 467 aaKnown RBP3.42□□□□□ -1.86
VPS35-209ENST00000568642 PRSS53Q2L4Q9 553 aa3.42□□□□□ -1.86
VPS35-209ENST00000568642 ANO4Q32M45 955 aa3.42□□□□□ -1.86
VPS35-209ENST00000568642 NBPF9Q3BBW0 867 aa3.42□□□□□ -1.86
VPS35-209ENST00000568642 FKBP15Q5T1M5 1219 aa3.42□□□□□ -1.86
VPS35-209ENST00000568642 CST9Q5W186 159 aa3.42□□□□□ -1.86
VPS35-209ENST00000568642 DCAF15Q66K64 600 aa3.42□□□□□ -1.86
VPS35-209ENST00000568642 GALNT17Q6IS24 598 aa3.42□□□□□ -1.86
VPS35-209ENST00000568642 FSTL4Q6MZW2 842 aa3.42□□□□□ -1.86
VPS35-209ENST00000568642 C4orf50Q6ZRC1 276 aa3.42□□□□□ -1.86
VPS35-209ENST00000568642 MFSD6Q6ZSS7 791 aa3.42□□□□□ -1.86
VPS35-209ENST00000568642 RFX8Q6ZV50 586 aa3.42□□□□□ -1.86
VPS35-209ENST00000568642 USP45Q70EL2 814 aa3.42□□□□□ -1.86
VPS35-209ENST00000568642 MCM10Q7L590 875 aa3.42□□□□□ -1.86
VPS35-209ENST00000568642 OTOP1Q7RTM1 612 aa3.42□□□□□ -1.86
VPS35-209ENST00000568642 UBE2Q1Q7Z7E8 422 aa3.42□□□□□ -1.86
VPS35-209ENST00000568642 DTX1Q86Y01 620 aa3.42□□□□□ -1.86
VPS35-209ENST00000568642 GALNT13Q8IUC8 556 aa3.42□□□□□ -1.86
VPS35-209ENST00000568642 DMRTC2Q8IXT2 367 aaPredicted RBP3.42□□□□□ -1.86
VPS35-209ENST00000568642 COLGALT2Q8IYK4 626 aa3.42□□□□□ -1.86
VPS35-209ENST00000568642 GRAMD1CQ8IYS0 662 aa3.42□□□□□ -1.86
VPS35-209ENST00000568642 RTKN2Q8IZC4 609 aa3.42□□□□□ -1.86
VPS35-209ENST00000568642 ABI1Q8IZP0 508 aa3.42□□□□□ -1.86
VPS35-209ENST00000568642 ARHGEF39Q8N4T4 335 aa3.42□□□□□ -1.86
VPS35-209ENST00000568642 BVESQ8NE79 360 aa3.42□□□□□ -1.86
VPS35-209ENST00000568642 PCDH19Q8TAB3 1148 aa3.42□□□□□ -1.86
VPS35-209ENST00000568642 RSAD2Q8WXG1 361 aa3.42□□□□□ -1.86
VPS35-209ENST00000568642 BRI3BPQ8WY22 251 aa3.42□□□□□ -1.86
VPS35-209ENST00000568642 RIN2Q8WYP3 895 aaPredicted RBP3.42□□□□□ -1.86
VPS35-209ENST00000568642 HTRA1Q92743 480 aa3.42□□□□□ -1.86
VPS35-209ENST00000568642 BRF1Q92994 677 aa3.42□□□□□ -1.86
VPS35-209ENST00000568642 ACSF2Q96CM8 615 aaPredicted RBP3.42□□□□□ -1.86
VPS35-209ENST00000568642 VWCEQ96DN2 955 aa3.42□□□□□ -1.86
VPS35-209ENST00000568642 C1GALT1C1Q96EU7 318 aa3.42□□□□□ -1.86
VPS35-209ENST00000568642 PLPPR2Q96GM1 343 aa3.42□□□□□ -1.86
VPS35-209ENST00000568642 RADILQ96JH8 1075 aa3.42□□□□□ -1.86
VPS35-209ENST00000568642 HHIPL1Q96JK4 782 aa3.42□□□□□ -1.86
VPS35-209ENST00000568642 SLC6A18Q96N87 628 aa3.42□□□□□ -1.86
VPS35-209ENST00000568642 POP1Q99575 1024 aaKnown RBP3.42□□□□□ -1.86
VPS35-209ENST00000568642 GPATCH1Q9BRR8 931 aaKnown RBP3.42□□□□□ -1.86
VPS35-209ENST00000568642 NRSN2Q9GZP1 204 aa3.42□□□□□ -1.86
VPS35-209ENST00000568642 PRDM13Q9H4Q3 707 aa3.42□□□□□ -1.86
VPS35-209ENST00000568642 FAM204AQ9H8W3 233 aa3.42□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms