RNA–Protein interactions for RNA: ENST00000567992.1

CLK3-220, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 603 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-220ENST00000567992 SLFN14P0C7P3 912 aa10.74□□□□□ -0.69
CLK3-220ENST00000567992 MYBP10242 640 aa10.74□□□□□ -0.69
CLK3-220ENST00000567992 IDEP14735 1019 aa10.74□□□□□ -0.69
CLK3-220ENST00000567992 IRS1P35568 1242 aa10.74□□□□□ -0.69
CLK3-220ENST00000567992 MCL1Q07820 350 aa10.74□□□□□ -0.69
CLK3-220ENST00000567992 KCNA1Q09470 495 aa10.74□□□□□ -0.69
CLK3-220ENST00000567992 CUL4BQ13620 913 aa10.74□□□□□ -0.69
CLK3-220ENST00000567992 NOLC1Q14978 699 aaKnown RBP eCLIP10.74□□□□□ -0.69
CLK3-220ENST00000567992 CCDC85BQ15834 202 aaPredicted RBP10.74□□□□□ -0.69
CLK3-220ENST00000567992 CSPP1Q1MSJ5 1256 aa10.74□□□□□ -0.69
CLK3-220ENST00000567992 XKR4Q5GH76 650 aa10.74□□□□□ -0.69
CLK3-220ENST00000567992 SPOUT1Q5T280 376 aaKnown RBP10.74□□□□□ -0.69
CLK3-220ENST00000567992 ZBTB33Q86T24 672 aa10.74□□□□□ -0.69
CLK3-220ENST00000567992 COLGALT2Q8IYK4 626 aa10.74□□□□□ -0.69
CLK3-220ENST00000567992 THNSL1Q8IYQ7 743 aa10.74□□□□□ -0.69
CLK3-220ENST00000567992 HACE1Q8IYU2 909 aa10.74□□□□□ -0.69
CLK3-220ENST00000567992 MICALL1Q8N3F8 863 aa10.74□□□□□ -0.69
CLK3-220ENST00000567992 FSIP1Q8NA03 581 aa10.74□□□□□ -0.69
CLK3-220ENST00000567992 SLC17A8Q8NDX2 589 aa10.74□□□□□ -0.69
CLK3-220ENST00000567992 POF1BQ8WVV4 589 aa10.74□□□□□ -0.69
CLK3-220ENST00000567992 MRPS27Q92552 414 aaKnown RBP10.74□□□□□ -0.69
CLK3-220ENST00000567992 HPS3Q969F9 1004 aa10.74□□□□□ -0.69
CLK3-220ENST00000567992 HVCN1Q96D96 273 aa10.74□□□□□ -0.69
CLK3-220ENST00000567992 PRDM6Q9NQX0 595 aa10.74□□□□□ -0.69
CLK3-220ENST00000567992 PANK4Q9NVE7 773 aa10.74□□□□□ -0.69
CLK3-220ENST00000567992 TBC1D7Q9P0N9 293 aa10.74□□□□□ -0.69
CLK3-220ENST00000567992 ANKFY1Q9P2R3 1169 aa10.74□□□□□ -0.69
CLK3-220ENST00000567992 PARP2Q9UGN5 583 aa10.74□□□□□ -0.69
CLK3-220ENST00000567992 SERTAD1Q9UHV2 236 aa10.74□□□□□ -0.69
CLK3-220ENST00000567992 GDAQ9Y2T3 454 aa10.74□□□□□ -0.69
CLK3-220ENST00000567992 PCDHGC5Q9Y5F6 944 aa10.74□□□□□ -0.69
CLK3-220ENST00000567992 NT5C1B-RDH14C9J2C7 533 aa10.73□□□□□ -0.69
CLK3-220ENST00000567992 ANKRD63C9JTQ0 380 aa10.73□□□□□ -0.69
CLK3-220ENST00000567992 F8W810 466 aa10.73□□□□□ -0.69
CLK3-220ENST00000567992 FSCN2O14926 492 aa10.73□□□□□ -0.69
CLK3-220ENST00000567992 HNRNPDLO14979 420 aaKnown RBP10.73□□□□□ -0.69
CLK3-220ENST00000567992 KLRC4O43908 158 aa10.73□□□□□ -0.69
CLK3-220ENST00000567992 HARSP12081 509 aaKnown RBP10.73□□□□□ -0.69
CLK3-220ENST00000567992 PPM1AP35813 382 aa10.73□□□□□ -0.69
CLK3-220ENST00000567992 ERVFC1P60507 584 aa10.73□□□□□ -0.69
CLK3-220ENST00000567992 ASIC1P78348 528 aa10.73□□□□□ -0.69
CLK3-220ENST00000567992 UBE3AQ05086 875 aa10.73□□□□□ -0.69
CLK3-220ENST00000567992 RNASELQ05823 741 aaKnown RBP10.73□□□□□ -0.69
CLK3-220ENST00000567992 GRIK3Q13003 919 aa10.73□□□□□ -0.69
CLK3-220ENST00000567992 COL19A1Q14993 1142 aa10.73□□□□□ -0.69
CLK3-220ENST00000567992 PTPROQ16827 1216 aa10.73□□□□□ -0.69
CLK3-220ENST00000567992 SEZ6Q53EL9 994 aa10.73□□□□□ -0.69
CLK3-220ENST00000567992 TIGD5Q53EQ6 642 aa10.73□□□□□ -0.69
CLK3-220ENST00000567992 HERC4Q5GLZ8 1057 aaPredicted RBP10.73□□□□□ -0.69
CLK3-220ENST00000567992 ZBTB41Q5SVQ8 909 aa10.73□□□□□ -0.69
CLK3-220ENST00000567992 ALKAL1Q6UXT8 129 aa10.73□□□□□ -0.69
CLK3-220ENST00000567992 UNC13DQ70J99 1090 aa10.73□□□□□ -0.69
CLK3-220ENST00000567992 EPM2AIP1Q7L775 607 aaPredicted RBP10.73□□□□□ -0.69
CLK3-220ENST00000567992 PAGE5Q96GU1 130 aa10.73□□□□□ -0.69
CLK3-220ENST00000567992 IGSF21Q96ID5 467 aa10.73□□□□□ -0.69
CLK3-220ENST00000567992 SNX27Q96L92 541 aa10.73□□□□□ -0.69
CLK3-220ENST00000567992 PYM1Q9BRP8 204 aaKnown RBP10.73□□□□□ -0.69
CLK3-220ENST00000567992 TMEM175Q9BSA9 504 aa10.73□□□□□ -0.69
CLK3-220ENST00000567992 LRRC27Q9C0I9 530 aa10.73□□□□□ -0.69
CLK3-220ENST00000567992 GBP3Q9H0R5 595 aa10.73□□□□□ -0.69
CLK3-220ENST00000567992 BLZF1Q9H2G9 400 aa10.73□□□□□ -0.69
CLK3-220ENST00000567992 MRPL44Q9H9J2 332 aaKnown RBP10.73□□□□□ -0.69
CLK3-220ENST00000567992 SPG21Q9NZD8 308 aa10.73□□□□□ -0.69
CLK3-220ENST00000567992 KANSL3Q9P2N6 904 aa10.73□□□□□ -0.69
CLK3-220ENST00000567992 LZTS1Q9Y250 596 aa10.73□□□□□ -0.69
CLK3-220ENST00000567992 A0A0B4J269 797 aa10.72□□□□□ -0.69
CLK3-220ENST00000567992 CSPG5O95196 566 aa10.72□□□□□ -0.69
CLK3-220ENST00000567992 GCNT3O95395 438 aa10.72□□□□□ -0.69
CLK3-220ENST00000567992 ADSSP30520 456 aa10.72□□□□□ -0.69
CLK3-220ENST00000567992 ABCD1P33897 745 aa10.72□□□□□ -0.69
CLK3-220ENST00000567992 HOXD13P35453 343 aa10.72□□□□□ -0.69
CLK3-220ENST00000567992 TNFSF9P41273 254 aa10.72□□□□□ -0.69
CLK3-220ENST00000567992 SYKP43405 635 aa10.72□□□□□ -0.69
CLK3-220ENST00000567992 AFMP43652 599 aa10.72□□□□□ -0.69
CLK3-220ENST00000567992 LIG4P49917 911 aa10.72□□□□□ -0.69
CLK3-220ENST00000567992 OSTNP61366 133 aa10.72□□□□□ -0.69
CLK3-220ENST00000567992 AMPD3Q01432 767 aa10.72□□□□□ -0.69
CLK3-220ENST00000567992 TCEAL5Q5H9L2 206 aa10.72□□□□□ -0.69
CLK3-220ENST00000567992 GLRA4Q5JXX5 417 aa10.72□□□□□ -0.69
CLK3-220ENST00000567992 L1TD1Q5T7N2 865 aaKnown RBP10.72□□□□□ -0.69
CLK3-220ENST00000567992 APBB1IPQ7Z5R6 666 aaPredicted RBP10.72□□□□□ -0.69
CLK3-220ENST00000567992 ADGRD2Q7Z7M1 963 aa10.72□□□□□ -0.69
CLK3-220ENST00000567992 CCDC65Q8IXS2 484 aa10.72□□□□□ -0.69
CLK3-220ENST00000567992 RNF168Q8IYW5 571 aaPredicted RBP10.72□□□□□ -0.69
CLK3-220ENST00000567992 CEP57L1Q8IYX8 460 aa10.72□□□□□ -0.69
CLK3-220ENST00000567992 ENGASEQ8NFI3 743 aa10.72□□□□□ -0.69
CLK3-220ENST00000567992 PPM1EQ8WY54 764 aa10.72□□□□□ -0.69
CLK3-220ENST00000567992 BICD1Q96G01 975 aa10.72□□□□□ -0.69
CLK3-220ENST00000567992 ZMAT2Q96NC0 199 aaKnown RBP10.72□□□□□ -0.69
CLK3-220ENST00000567992 PPP1R10Q96QC0 940 aaKnown RBP10.72□□□□□ -0.69
CLK3-220ENST00000567992 PAAF1Q9BRP4 392 aa10.72□□□□□ -0.69
CLK3-220ENST00000567992 TCHPQ9BT92 498 aa10.72□□□□□ -0.69
CLK3-220ENST00000567992 NSUN3Q9H649 340 aaKnown RBP10.72□□□□□ -0.69
CLK3-220ENST00000567992 TLR9Q9NR96 1032 aa10.72□□□□□ -0.69
CLK3-220ENST00000567992 CACNG4Q9UBN1 327 aa10.72□□□□□ -0.69
CLK3-220ENST00000567992 USP25Q9UHP3 1055 aa10.72□□□□□ -0.69
CLK3-220ENST00000567992 STYXL1Q9Y6J8 313 aa10.72□□□□□ -0.69
CLK3-220ENST00000567992 VWA8A3KMH1 1905 aa10.72□□□□□ -0.69
CLK3-220ENST00000567992 NRP1O14786 923 aa10.71□□□□□ -0.69
CLK3-220ENST00000567992 CLDN3O15551 220 aa10.71□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms