RNA–Protein interactions for RNA: ENST00000567804.1

CLN3-228, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 557 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-228ENST00000567804 TGM5O43548 720 aa16.51■□□□□ 0.23
CLN3-228ENST00000567804 NPR3P17342 541 aa16.51■□□□□ 0.23
CLN3-228ENST00000567804 GBP2P32456 591 aaPredicted RBP16.51■□□□□ 0.23
CLN3-228ENST00000567804 CREMQ03060 361 aa16.51■□□□□ 0.23
CLN3-228ENST00000567804 HSP90AA2PQ14568 343 aaPredicted RBP16.51■□□□□ 0.23
CLN3-228ENST00000567804 SAFBQ15424 915 aaKnown RBP eCLIP16.51■□□□□ 0.23
CLN3-228ENST00000567804 LILRA6Q6PI73 481 aa16.51■□□□□ 0.23
CLN3-228ENST00000567804 POTEGQ6S5H5 508 aa16.51■□□□□ 0.23
CLN3-228ENST00000567804 GLYCTKQ8IVS8 523 aa16.51■□□□□ 0.23
CLN3-228ENST00000567804 RIN2Q8WYP3 895 aaPredicted RBP16.51■□□□□ 0.23
CLN3-228ENST00000567804 BSNDQ8WZ55 320 aa16.51■□□□□ 0.23
CLN3-228ENST00000567804 C2orf40Q9H1Z8 148 aa16.51■□□□□ 0.23
CLN3-228ENST00000567804 PDZD7Q9H5P4 517 aa16.51■□□□□ 0.23
CLN3-228ENST00000567804 EPS15L1Q9UBC2 864 aa16.51■□□□□ 0.23
CLN3-228ENST00000567804 SF3B1O75533 1304 aaKnown RBP eCLIP16.5■□□□□ 0.23
CLN3-228ENST00000567804 CITO14578 2027 aa16.5■□□□□ 0.23
CLN3-228ENST00000567804 N4BP3O15049 544 aa16.5■□□□□ 0.23
CLN3-228ENST00000567804 NARSO43776 548 aaKnown RBP16.5■□□□□ 0.23
CLN3-228ENST00000567804 TADA2AO75478 443 aa16.5■□□□□ 0.23
CLN3-228ENST00000567804 RPL17P18621 184 aaKnown RBP16.5■□□□□ 0.23
CLN3-228ENST00000567804 AOC1P19801 751 aa16.5■□□□□ 0.23
CLN3-228ENST00000567804 RPA1P27694 616 aa16.5■□□□□ 0.23
CLN3-228ENST00000567804 ORC2Q13416 577 aaPredicted RBP16.5■□□□□ 0.23
CLN3-228ENST00000567804 TUSC3Q13454 348 aa16.5■□□□□ 0.23
CLN3-228ENST00000567804 RTP2Q5QGT7 225 aa16.5■□□□□ 0.23
CLN3-228ENST00000567804 ERMNQ8TAM6 284 aa16.5■□□□□ 0.23
CLN3-228ENST00000567804 RSAD2Q8WXG1 361 aa16.5■□□□□ 0.23
CLN3-228ENST00000567804 MYADMQ96S97 322 aa16.5■□□□□ 0.23
CLN3-228ENST00000567804 NT5C3AQ9H0P0 336 aa16.5■□□□□ 0.23
CLN3-228ENST00000567804 ZDHHC7Q9NXF8 308 aa16.5■□□□□ 0.23
CLN3-228ENST00000567804 SNTG2Q9NY99 539 aa16.5■□□□□ 0.23
CLN3-228ENST00000567804 FBXL21Q9UKT6 434 aa16.5■□□□□ 0.23
CLN3-228ENST00000567804 CFAP54Q96N23 3096 aa16.5■□□□□ 0.23
CLN3-228ENST00000567804 MYH11P35749 1972 aa16.49■□□□□ 0.23
CLN3-228ENST00000567804 CASTOR2A6NHX0 329 aa16.49■□□□□ 0.23
CLN3-228ENST00000567804 PTGESO14684 152 aa16.49■□□□□ 0.23
CLN3-228ENST00000567804 EIF5BO60841 1220 aaKnown RBP16.49■□□□□ 0.23
CLN3-228ENST00000567804 EDN1P05305 212 aa16.49■□□□□ 0.23
CLN3-228ENST00000567804 OR52Z1P0C646 297 aa16.49■□□□□ 0.23
CLN3-228ENST00000567804 CYP11B2P19099 503 aa16.49■□□□□ 0.23
CLN3-228ENST00000567804 NBL1P41271 181 aa16.49■□□□□ 0.23
CLN3-228ENST00000567804 PRPF4BQ13523 1007 aaKnown RBP16.49■□□□□ 0.23
CLN3-228ENST00000567804 MAPK6Q16659 721 aa16.49■□□□□ 0.23
CLN3-228ENST00000567804 PADI6Q6TGC4 694 aa16.49■□□□□ 0.23
CLN3-228ENST00000567804 PRSS55Q6UWB4 352 aaPredicted RBP16.49■□□□□ 0.23
CLN3-228ENST00000567804 HASPINQ8TF76 798 aa16.49■□□□□ 0.23
CLN3-228ENST00000567804 PRKD2Q9BZL6 878 aa16.49■□□□□ 0.23
CLN3-228ENST00000567804 CCDC113Q9H0I3 377 aa16.49■□□□□ 0.23
CLN3-228ENST00000567804 PIDD1Q9HB75 910 aa16.49■□□□□ 0.23
CLN3-228ENST00000567804 PDCD11Q14690 1871 aaKnown RBP16.48■□□□□ 0.23
CLN3-228ENST00000567804 ARHGEF35A5YM69 484 aa16.48■□□□□ 0.23
CLN3-228ENST00000567804 ACKR2O00590 384 aa16.48■□□□□ 0.23
CLN3-228ENST00000567804 PI15O43692 258 aa16.48■□□□□ 0.23
CLN3-228ENST00000567804 ZMYND10O75800 440 aa16.48■□□□□ 0.23
CLN3-228ENST00000567804 RECQL4O94761 1208 aa16.48■□□□□ 0.23
CLN3-228ENST00000567804 KIF4AO95239 1232 aa16.48■□□□□ 0.23
CLN3-228ENST00000567804 PRKCBP05771 671 aa16.48■□□□□ 0.23
CLN3-228ENST00000567804 NAMPTP43490 491 aa16.48■□□□□ 0.23
CLN3-228ENST00000567804 ZNF174Q15697 407 aa16.48■□□□□ 0.23
CLN3-228ENST00000567804 NAB2Q15742 525 aa16.48■□□□□ 0.23
CLN3-228ENST00000567804 TMEM132AQ24JP5 1023 aa16.48■□□□□ 0.23
CLN3-228ENST00000567804 CCDC83Q8IWF9 413 aa16.48■□□□□ 0.23
CLN3-228ENST00000567804 SIX5Q8N196 739 aa16.48■□□□□ 0.23
CLN3-228ENST00000567804 C8orf76Q96K31 380 aa16.48■□□□□ 0.23
CLN3-228ENST00000567804 ADPGKQ9BRR6 497 aa16.48■□□□□ 0.23
CLN3-228ENST00000567804 CXCL16Q9H2A7 254 aa16.48■□□□□ 0.23
CLN3-228ENST00000567804 FOXP1Q9H334 677 aaPredicted RBP16.48■□□□□ 0.23
CLN3-228ENST00000567804 FBXW11Q9UKB1 542 aa16.48■□□□□ 0.23
CLN3-228ENST00000567804 MIA3Q5JRA6 1907 aa16.48■□□□□ 0.23
CLN3-228ENST00000567804 NOTCH4Q99466 2003 aa16.48■□□□□ 0.23
CLN3-228ENST00000567804 VPS13AQ96RL7 3174 aa16.48■□□□□ 0.23
CLN3-228ENST00000567804 SEC24BO95487 1268 aa16.47■□□□□ 0.23
CLN3-228ENST00000567804 THP07101 528 aa16.47■□□□□ 0.23
CLN3-228ENST00000567804 CFHP08603 1231 aa16.47■□□□□ 0.23
CLN3-228ENST00000567804 MUTP22033 750 aa16.47■□□□□ 0.23
CLN3-228ENST00000567804 PPP2R5AQ15172 486 aa16.47■□□□□ 0.23
CLN3-228ENST00000567804 TTC38Q5R3I4 469 aa16.47■□□□□ 0.23
CLN3-228ENST00000567804 FAM171A1Q5VUB5 890 aa16.47■□□□□ 0.23
CLN3-228ENST00000567804 EEF1DP3Q658K8 133 aa16.47■□□□□ 0.23
CLN3-228ENST00000567804 HAUS3Q68CZ6 603 aa16.47■□□□□ 0.23
CLN3-228ENST00000567804 GET4Q7L5D6 327 aaPredicted RBP16.47■□□□□ 0.23
CLN3-228ENST00000567804 ASCL5Q7RTU5 278 aa16.47■□□□□ 0.23
CLN3-228ENST00000567804 NOSTRINQ8IVI9 506 aa16.47■□□□□ 0.23
CLN3-228ENST00000567804 SLC44A3Q8N4M1 653 aa16.47■□□□□ 0.23
CLN3-228ENST00000567804 PIK3R5Q8WYR1 880 aa16.47■□□□□ 0.23
CLN3-228ENST00000567804 NXPE3Q969Y0 559 aa16.47■□□□□ 0.23
CLN3-228ENST00000567804 RTP3Q9BQQ7 232 aa16.47■□□□□ 0.23
CLN3-228ENST00000567804 LLPHQ9BRT6 129 aaKnown RBP16.47■□□□□ 0.23
CLN3-228ENST00000567804 TTPALQ9BTX7 342 aa16.47■□□□□ 0.23
CLN3-228ENST00000567804 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP16.47■□□□□ 0.23
CLN3-228ENST00000567804 WNT16Q9UBV4 365 aa16.47■□□□□ 0.23
CLN3-228ENST00000567804 LIMCH1Q9UPQ0 1083 aa16.47■□□□□ 0.23
CLN3-228ENST00000567804 USP20Q9Y2K6 914 aa16.47■□□□□ 0.23
CLN3-228ENST00000567804 FAM186AA6NE01 2351 aa16.46■□□□□ 0.23
CLN3-228ENST00000567804 PRR23AA6NEV1 266 aa16.46■□□□□ 0.23
CLN3-228ENST00000567804 LAMP2P13473 410 aa16.46■□□□□ 0.23
CLN3-228ENST00000567804 LIG1P18858 919 aa16.46■□□□□ 0.23
CLN3-228ENST00000567804 PSMD5Q16401 504 aa16.46■□□□□ 0.23
CLN3-228ENST00000567804 ECM1Q16610 540 aa16.46■□□□□ 0.23
CLN3-228ENST00000567804 CCDC105Q8IYK2 499 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms