RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 GRM5P41594 1212 aa21.39■■□□□ 1.01
CLN3-225ENST00000566824 SCNN1GP51170 649 aa21.39■■□□□ 1.01
CLN3-225ENST00000566824 NOLC1Q14978 699 aaKnown RBP eCLIP21.39■■□□□ 1.01
CLN3-225ENST00000566824 ZNF507Q8TCN5 953 aa21.39■■□□□ 1.01
CLN3-225ENST00000566824 GDPD5Q8WTR4 605 aa21.39■■□□□ 1.01
CLN3-225ENST00000566824 SCFD1Q8WVM8 642 aa21.39■■□□□ 1.01
CLN3-225ENST00000566824 TIGD1Q96MW7 591 aa21.39■■□□□ 1.01
CLN3-225ENST00000566824 EXOC1Q9NV70 894 aa21.39■■□□□ 1.01
CLN3-225ENST00000566824 DNAJB4Q9UDY4 337 aa21.39■■□□□ 1.01
CLN3-225ENST00000566824 GIT1Q9Y2X7 761 aa21.39■■□□□ 1.01
CLN3-225ENST00000566824 ANK1P16157 1881 aa21.39■■□□□ 1.01
CLN3-225ENST00000566824 PDCD11Q14690 1871 aaKnown RBP21.39■■□□□ 1.01
CLN3-225ENST00000566824 A0A0B4J269 797 aa21.38■■□□□ 1.01
CLN3-225ENST00000566824 PTGESO14684 152 aa21.38■■□□□ 1.01
CLN3-225ENST00000566824 CLDN3O15551 220 aa21.38■■□□□ 1.01
CLN3-225ENST00000566824 MYL1P05976 194 aa21.38■■□□□ 1.01
CLN3-225ENST00000566824 CTNNB1P35222 781 aa21.38■■□□□ 1.01
CLN3-225ENST00000566824 BMPR1AP36894 532 aa21.38■■□□□ 1.01
CLN3-225ENST00000566824 MATR3P43243 847 aaKnown RBP eCLIP21.38■■□□□ 1.01
CLN3-225ENST00000566824 ADGRE1Q14246 886 aa21.38■■□□□ 1.01
CLN3-225ENST00000566824 NELFCDQ8IXH7 590 aa21.38■■□□□ 1.01
CLN3-225ENST00000566824 LRRC43Q8N309 656 aa21.38■■□□□ 1.01
CLN3-225ENST00000566824 COLGALT1Q8NBJ5 622 aa21.38■■□□□ 1.01
CLN3-225ENST00000566824 CDX2Q99626 313 aaPredicted RBP21.38■■□□□ 1.01
CLN3-225ENST00000566824 GBP3Q9H0R5 595 aa21.38■■□□□ 1.01
CLN3-225ENST00000566824 NRDE2Q9H7Z3 1164 aa21.38■■□□□ 1.01
CLN3-225ENST00000566824 STYXL1Q9Y6J8 313 aa21.38■■□□□ 1.01
CLN3-225ENST00000566824 MYO7AQ13402 2215 aa21.38■■□□□ 1.01
CLN3-225ENST00000566824 LPXNO60711 386 aa21.37■■□□□ 1.01
CLN3-225ENST00000566824 SPOUT1Q5T280 376 aaKnown RBP21.37■■□□□ 1.01
CLN3-225ENST00000566824 KANK3Q6NY19 840 aa21.37■■□□□ 1.01
CLN3-225ENST00000566824 TMEM130Q8N3G9 435 aa21.37■■□□□ 1.01
CLN3-225ENST00000566824 FBXO22Q8NEZ5 403 aa21.37■■□□□ 1.01
CLN3-225ENST00000566824 MYLIPQ8WY64 445 aa21.37■■□□□ 1.01
CLN3-225ENST00000566824 UBN1Q9NPG3 1134 aa21.37■■□□□ 1.01
CLN3-225ENST00000566824 CACNG4Q9UBN1 327 aa21.37■■□□□ 1.01
CLN3-225ENST00000566824 NT5C1B-RDH14C9J2C7 533 aa21.36■■□□□ 1.01
CLN3-225ENST00000566824 EIF3DO15371 548 aaKnown RBP eCLIP21.36■■□□□ 1.01
CLN3-225ENST00000566824 KINO60870 393 aaKnown RBP21.36■■□□□ 1.01
CLN3-225ENST00000566824 RHOBTB3O94955 611 aa21.36■■□□□ 1.01
CLN3-225ENST00000566824 ABCD1P33897 745 aa21.36■■□□□ 1.01
CLN3-225ENST00000566824 ALCAMQ13740 583 aa21.36■■□□□ 1.01
CLN3-225ENST00000566824 SYCP3Q8IZU3 236 aa21.36■■□□□ 1.01
CLN3-225ENST00000566824 MSTO1Q9BUK6 570 aa21.36■■□□□ 1.01
CLN3-225ENST00000566824 PCDHA5Q9Y5H7 936 aa21.36■■□□□ 1.01
CLN3-225ENST00000566824 TGFB1I1O43294 461 aa21.35■■□□□ 1.01
CLN3-225ENST00000566824 NAB2Q15742 525 aa21.35■■□□□ 1.01
CLN3-225ENST00000566824 SLC10A6Q3KNW5 377 aa21.35■■□□□ 1.01
CLN3-225ENST00000566824 GLRA4Q5JXX5 417 aa21.35■■□□□ 1.01
CLN3-225ENST00000566824 ALKAL1Q6UXT8 129 aa21.35■■□□□ 1.01
CLN3-225ENST00000566824 TMEM173Q86WV6 379 aaPredicted RBP21.35■■□□□ 1.01
CLN3-225ENST00000566824 HACE1Q8IYU2 909 aa21.35■■□□□ 1.01
CLN3-225ENST00000566824 KLHL23Q8NBE8 558 aa21.35■■□□□ 1.01
CLN3-225ENST00000566824 URGCPQ8TCY9 931 aa21.35■■□□□ 1.01
CLN3-225ENST00000566824 BCL7CQ8WUZ0 217 aaPredicted RBP21.35■■□□□ 1.01
CLN3-225ENST00000566824 RABGGTAQ92696 567 aa21.35■■□□□ 1.01
CLN3-225ENST00000566824 ZMAT2Q96NC0 199 aaKnown RBP21.35■■□□□ 1.01
CLN3-225ENST00000566824 GBP4Q96PP9 640 aa21.35■■□□□ 1.01
CLN3-225ENST00000566824 CBWD1Q9BRT8 395 aa21.35■■□□□ 1.01
CLN3-225ENST00000566824 CCDC94Q9BW85 323 aaPredicted RBP21.35■■□□□ 1.01
CLN3-225ENST00000566824 MRPL9Q9BYD2 267 aaKnown RBP21.35■■□□□ 1.01
CLN3-225ENST00000566824 PRRC2BQ5JSZ5 2229 aaKnown RBP21.35■■□□□ 1.01
CLN3-225ENST00000566824 C5orf67F2Z3F1 127 aa21.34■■□□□ 1.01
CLN3-225ENST00000566824 F8W810 466 aa21.34■■□□□ 1.01
CLN3-225ENST00000566824 OGTO15294 1046 aa21.34■■□□□ 1.01
CLN3-225ENST00000566824 GRM6O15303 877 aa21.34■■□□□ 1.01
CLN3-225ENST00000566824 ZC3H11AO75152 810 aaKnown RBP eCLIP21.34■■□□□ 1.01
CLN3-225ENST00000566824 ITGB1P05556 798 aa21.34■■□□□ 1.01
CLN3-225ENST00000566824 CXCL8P10145 99 aa21.34■■□□□ 1.01
CLN3-225ENST00000566824 DNAJB1P25685 340 aa21.34■■□□□ 1.01
CLN3-225ENST00000566824 SLC11A1P49279 550 aa21.34■■□□□ 1.01
CLN3-225ENST00000566824 ACOT2P49753 483 aa21.34■■□□□ 1.01
CLN3-225ENST00000566824 BCAR1P56945 870 aa21.34■■□□□ 1.01
CLN3-225ENST00000566824 RNASELQ05823 741 aaKnown RBP21.34■■□□□ 1.01
CLN3-225ENST00000566824 PSMD2Q13200 908 aa21.34■■□□□ 1.01
CLN3-225ENST00000566824 BMT2Q1RMZ1 405 aa21.34■■□□□ 1.01
CLN3-225ENST00000566824 KCNT2Q6UVM3 1135 aa21.34■■□□□ 1.01
CLN3-225ENST00000566824 CRELD2Q6UXH1 353 aaPredicted RBP21.34■■□□□ 1.01
CLN3-225ENST00000566824 APBB1IPQ7Z5R6 666 aaPredicted RBP21.34■■□□□ 1.01
CLN3-225ENST00000566824 SMYD4Q8IYR2 804 aaPredicted RBP21.34■■□□□ 1.01
CLN3-225ENST00000566824 SPATA20Q8TB22 786 aa21.34■■□□□ 1.01
CLN3-225ENST00000566824 SAAL1Q96ER3 474 aa21.34■■□□□ 1.01
CLN3-225ENST00000566824 SNX27Q96L92 541 aa21.34■■□□□ 1.01
CLN3-225ENST00000566824 ACAP3Q96P50 834 aa21.34■■□□□ 1.01
CLN3-225ENST00000566824 PCIF1Q9H4Z3 704 aa21.34■■□□□ 1.01
CLN3-225ENST00000566824 ALG13Q9NP73 1137 aaKnown RBP21.34■■□□□ 1.01
CLN3-225ENST00000566824 EXOC7Q9UPT5 735 aa21.34■■□□□ 1.01
CLN3-225ENST00000566824 MAPK8IP1Q9UQF2 711 aa21.34■■□□□ 1.01
CLN3-225ENST00000566824 H3BNC9 293 aa21.33■■□□□ 1.01
CLN3-225ENST00000566824 GALTP07902 379 aa21.33■■□□□ 1.01
CLN3-225ENST00000566824 SPAG1Q07617 926 aa21.33■■□□□ 1.01
CLN3-225ENST00000566824 DSC1Q08554 894 aa21.33■■□□□ 1.01
CLN3-225ENST00000566824 GPM6BQ13491 265 aa21.33■■□□□ 1.01
CLN3-225ENST00000566824 KCNB1Q14721 858 aa21.33■■□□□ 1.01
CLN3-225ENST00000566824 ENOX2Q16206 610 aaKnown RBP21.33■■□□□ 1.01
CLN3-225ENST00000566824 XKR4Q5GH76 650 aa21.33■■□□□ 1.01
CLN3-225ENST00000566824 COLGALT2Q8IYK4 626 aa21.33■■□□□ 1.01
CLN3-225ENST00000566824 GPT2Q8TD30 523 aa21.33■■□□□ 1.01
CLN3-225ENST00000566824 POMGNT1Q8WZA1 660 aa21.33■■□□□ 1.01
CLN3-225ENST00000566824 SAMD11Q96NU1 681 aa21.33■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms