RNA–Protein interactions for RNA: ENST00000565379.1

NME3-208, Transcript of NME/NM23 nucleoside diphosphate kinase 3, humanhuman

TSL 2

Gene NME3, Length 911 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NME3-208ENST00000565379 FNDC1Q4ZHG4 1894 aaPredicted RBP28.38■■■□□ 2.13
NME3-208ENST00000565379 B4GALT5O43286 388 aa28.37■■■□□ 2.13
NME3-208ENST00000565379 TOM1L1O75674 476 aa28.37■■■□□ 2.13
NME3-208ENST00000565379 KCNA5P22460 613 aa28.37■■■□□ 2.13
NME3-208ENST00000565379 LIG4P49917 911 aa28.37■■■□□ 2.13
NME3-208ENST00000565379 SNRPFP62306 86 aaKnown RBP28.37■■■□□ 2.13
NME3-208ENST00000565379 CAMK1Q14012 370 aa28.37■■■□□ 2.13
NME3-208ENST00000565379 TIGD5Q53EQ6 642 aa28.37■■■□□ 2.13
NME3-208ENST00000565379 COBLL1Q53SF7 1204 aa28.37■■■□□ 2.13
NME3-208ENST00000565379 KIAA0895Q8NCT3 520 aa28.37■■■□□ 2.13
NME3-208ENST00000565379 C11orf84Q9BUA3 381 aaPredicted RBP28.37■■■□□ 2.13
NME3-208ENST00000565379 RNF19AQ9NV58 838 aa28.37■■■□□ 2.13
NME3-208ENST00000565379 MAN1B1Q9UKM7 699 aa28.37■■■□□ 2.13
NME3-208ENST00000565379 PCDHB7Q9Y5E2 793 aa28.37■■■□□ 2.13
NME3-208ENST00000565379 TBKBP1A7MCY6 615 aa28.36■■■□□ 2.13
NME3-208ENST00000565379 HNRNPDLO14979 420 aaKnown RBP28.36■■■□□ 2.13
NME3-208ENST00000565379 ITGB1P05556 798 aa28.36■■■□□ 2.13
NME3-208ENST00000565379 RB1P06400 928 aa28.36■■■□□ 2.13
NME3-208ENST00000565379 NFKBIBQ15653 356 aa28.36■■■□□ 2.13
NME3-208ENST00000565379 DCAF4L1Q3SXM0 396 aa28.36■■■□□ 2.13
NME3-208ENST00000565379 SLFN12LQ6IEE8 588 aa28.36■■■□□ 2.13
NME3-208ENST00000565379 SYCP3Q8IZU3 236 aa28.36■■■□□ 2.13
NME3-208ENST00000565379 SCFD1Q8WVM8 642 aa28.36■■■□□ 2.13
NME3-208ENST00000565379 ERCC4Q92889 916 aaPredicted RBP28.36■■■□□ 2.13
NME3-208ENST00000565379 CPB2Q96IY4 423 aa28.36■■■□□ 2.13
NME3-208ENST00000565379 TARS2Q9BW92 718 aaKnown RBP28.36■■■□□ 2.13
NME3-208ENST00000565379 FGFBP2Q9BYJ0 223 aa28.36■■■□□ 2.13
NME3-208ENST00000565379 CGNQ9P2M7 1197 aaKnown RBP28.36■■■□□ 2.13
NME3-208ENST00000565379 A0A0U1RQF3 1178 aa28.35■■■□□ 2.13
NME3-208ENST00000565379 PRPF6O94906 941 aaKnown RBP28.35■■■□□ 2.13
NME3-208ENST00000565379 FAM189BP81408 668 aa28.35■■■□□ 2.13
NME3-208ENST00000565379 RBM43Q6ZSC3 357 aaKnown RBP28.35■■■□□ 2.13
NME3-208ENST00000565379 GUF1Q8N442 669 aaKnown RBP28.35■■■□□ 2.13
NME3-208ENST00000565379 KLHL23Q8NBE8 558 aa28.35■■■□□ 2.13
NME3-208ENST00000565379 PDZD7Q9H5P4 517 aa28.35■■■□□ 2.13
NME3-208ENST00000565379 NSUN3Q9H649 340 aaKnown RBP28.35■■■□□ 2.13
NME3-208ENST00000565379 EPHX3Q9H6B9 360 aa28.35■■■□□ 2.13
NME3-208ENST00000565379 ELAC1Q9H777 363 aaKnown RBP28.35■■■□□ 2.13
NME3-208ENST00000565379 PTPRHQ9HD43 1115 aa28.35■■■□□ 2.13
NME3-208ENST00000565379 PLAGL2Q9UPG8 496 aa28.35■■■□□ 2.13
NME3-208ENST00000565379 PCDHGC5Q9Y5F6 944 aa28.35■■■□□ 2.13
NME3-208ENST00000565379 H3BQ06 376 aaPredicted RBP28.34■■■□□ 2.13
NME3-208ENST00000565379 ZNF623O75123 536 aa28.34■■■□□ 2.13
NME3-208ENST00000565379 PROZP22891 400 aa28.34■■■□□ 2.13
NME3-208ENST00000565379 GTF2F1P35269 517 aaKnown RBP eCLIP28.34■■■□□ 2.134e-7■■■□□ 18.9
NME3-208ENST00000565379 STIM1Q13586 685 aa28.34■■■□□ 2.13
NME3-208ENST00000565379 MORC3Q14149 939 aa28.34■■■□□ 2.13
NME3-208ENST00000565379 KNOP1Q1ED39 458 aaKnown RBP28.34■■■□□ 2.13
NME3-208ENST00000565379 MPZL3Q6UWV2 235 aa28.34■■■□□ 2.13
NME3-208ENST00000565379 HACE1Q8IYU2 909 aa28.34■■■□□ 2.13
NME3-208ENST00000565379 GOLGA5Q8TBA6 731 aa28.34■■■□□ 2.13
NME3-208ENST00000565379 TCHPQ9BT92 498 aa28.34■■■□□ 2.13
NME3-208ENST00000565379 TRIM6Q9C030 488 aaPredicted RBP28.34■■■□□ 2.13
NME3-208ENST00000565379 GBP3Q9H0R5 595 aa28.34■■■□□ 2.13
NME3-208ENST00000565379 FAM105AQ9NUU6 356 aa28.34■■■□□ 2.13
NME3-208ENST00000565379 RWDD3Q9Y3V2 267 aa28.34■■■□□ 2.13
NME3-208ENST00000565379 CLDN3O15551 220 aa28.33■■■□□ 2.13
NME3-208ENST00000565379 EOMESO95936 686 aa28.33■■■□□ 2.13
NME3-208ENST00000565379 EDN1P05305 212 aa28.33■■■□□ 2.13
NME3-208ENST00000565379 MCF2P10911 925 aa28.33■■■□□ 2.13
NME3-208ENST00000565379 IRS1P35568 1242 aa28.33■■■□□ 2.13
NME3-208ENST00000565379 LEXMQ3ZCV2 418 aa28.33■■■□□ 2.13
NME3-208ENST00000565379 GLIS3Q8NEA6 775 aa28.33■■■□□ 2.13
NME3-208ENST00000565379 STYXL1Q9Y6J8 313 aa28.33■■■□□ 2.13
NME3-208ENST00000565379 TTLL13PA6NNM8 815 aa28.32■■■□□ 2.12
NME3-208ENST00000565379 LETM1O95202 739 aaPredicted RBP28.32■■■□□ 2.12
NME3-208ENST00000565379 KYAT1Q16773 422 aa28.32■■■□□ 2.12
NME3-208ENST00000565379 UBXN11Q5T124 520 aa28.32■■■□□ 2.12
NME3-208ENST00000565379 EP400NLQ6ZTU2 488 aa28.32■■■□□ 2.12
NME3-208ENST00000565379 HS2ST1Q7LGA3 356 aa28.32■■■□□ 2.12
NME3-208ENST00000565379 GADD45GIP1Q8TAE8 222 aaPredicted RBP28.32■■■□□ 2.12
NME3-208ENST00000565379 SPPL3Q8TCT6 385 aa28.32■■■□□ 2.12
NME3-208ENST00000565379 RSPH1Q8WYR4 309 aa28.32■■■□□ 2.12
NME3-208ENST00000565379 PGBD4Q96DM1 585 aa28.32■■■□□ 2.12
NME3-208ENST00000565379 PLVAPQ9BX97 442 aa28.32■■■□□ 2.12
NME3-208ENST00000565379 TMEM161AQ9NX61 479 aa28.32■■■□□ 2.12
NME3-208ENST00000565379 GDAQ9Y2T3 454 aa28.32■■■□□ 2.12
NME3-208ENST00000565379 KIAA0391O15091 583 aaKnown RBP28.31■■■□□ 2.12
NME3-208ENST00000565379 MCL1Q07820 350 aa28.31■■■□□ 2.12
NME3-208ENST00000565379 KCNA1Q09470 495 aa28.31■■■□□ 2.12
NME3-208ENST00000565379 HYAL1Q12794 435 aa28.31■■■□□ 2.12
NME3-208ENST00000565379 HSP90AA2PQ14568 343 aaPredicted RBP28.31■■■□□ 2.12
NME3-208ENST00000565379 ZNF568Q3ZCX4 644 aa28.31■■■□□ 2.12
NME3-208ENST00000565379 CAVIN1Q6NZI2 390 aaKnown RBP28.31■■■□□ 2.12
NME3-208ENST00000565379 ECHDC2Q86YB7 292 aa28.31■■■□□ 2.12
NME3-208ENST00000565379 RNF169Q8NCN4 708 aa28.31■■■□□ 2.12
NME3-208ENST00000565379 TYW1Q9NV66 732 aaKnown RBP28.31■■■□□ 2.12
NME3-208ENST00000565379 TMEM63CQ9P1W3 806 aa28.31■■■□□ 2.12
NME3-208ENST00000565379 PCDHB2Q9Y5E7 798 aa28.31■■■□□ 2.12
NME3-208ENST00000565379 PLXNA4Q9HCM2 1894 aa28.31■■■□□ 2.12
NME3-208ENST00000565379 ATF7P17544 494 aaPredicted RBP28.3■■■□□ 2.12
NME3-208ENST00000565379 GARTP22102 1010 aa28.3■■■□□ 2.12
NME3-208ENST00000565379 NOLC1Q14978 699 aaKnown RBP eCLIP28.3■■■□□ 2.12
NME3-208ENST00000565379 LRRC55Q6ZSA7 311 aa28.3■■■□□ 2.12
NME3-208ENST00000565379 MRPL10Q7Z7H8 261 aaKnown RBP28.3■■■□□ 2.12
NME3-208ENST00000565379 ADGRD2Q7Z7M1 963 aa28.3■■■□□ 2.12
NME3-208ENST00000565379 LMAN2LQ9H0V9 348 aa28.3■■■□□ 2.12
NME3-208ENST00000565379 CWH43Q9H720 699 aa28.3■■■□□ 2.12
NME3-208ENST00000565379 UBN1Q9NPG3 1134 aa28.3■■■□□ 2.12
NME3-208ENST00000565379 PDXKO00764 312 aa28.29■■■□□ 2.12
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms