RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 PTENP60484 403 aa8.1□□□□□ -1.11
VPS39-204ENST00000561818 FAM193AP78312 1265 aa8.1□□□□□ -1.11
VPS39-204ENST00000561818 AMPD2Q01433 879 aa8.1□□□□□ -1.11
VPS39-204ENST00000561818 TAP1Q03518 808 aa8.1□□□□□ -1.11
VPS39-204ENST00000561818 ARHGAP1Q07960 439 aa8.1□□□□□ -1.11
VPS39-204ENST00000561818 PRPF4BQ13523 1007 aaKnown RBP8.1□□□□□ -1.11
VPS39-204ENST00000561818 ACVR2BQ13705 512 aa8.1□□□□□ -1.11
VPS39-204ENST00000561818 CAPSQ13938 189 aa8.1□□□□□ -1.11
VPS39-204ENST00000561818 TAF1CQ15572 869 aaPredicted RBP8.1□□□□□ -1.11
VPS39-204ENST00000561818 LY6KQ17RY6 165 aa8.1□□□□□ -1.11
VPS39-204ENST00000561818 TMEM132AQ24JP5 1023 aa8.1□□□□□ -1.11
VPS39-204ENST00000561818 SGSM1Q2NKQ1 1148 aa8.1□□□□□ -1.11
VPS39-204ENST00000561818 HSDL1Q3SXM5 330 aa8.1□□□□□ -1.11
VPS39-204ENST00000561818 CBWD6Q4V339 395 aa8.1□□□□□ -1.11
VPS39-204ENST00000561818 CBWD3Q5JTY5 395 aa8.1□□□□□ -1.11
VPS39-204ENST00000561818 CBWD5Q5RIA9 395 aa8.1□□□□□ -1.11
VPS39-204ENST00000561818 C11orf63Q6NUN7 778 aa8.1□□□□□ -1.11
VPS39-204ENST00000561818 RGMBQ6NW40 437 aa8.1□□□□□ -1.11
VPS39-204ENST00000561818 WDR93Q6P2C0 686 aa8.1□□□□□ -1.11
VPS39-204ENST00000561818 SV2AQ7L0J3 742 aa8.1□□□□□ -1.11
VPS39-204ENST00000561818 FAM71AQ8IYT1 594 aa8.1□□□□□ -1.11
VPS39-204ENST00000561818 PPM1KQ8N3J5 372 aa8.1□□□□□ -1.11
VPS39-204ENST00000561818 NME8Q8N427 588 aa8.1□□□□□ -1.11
VPS39-204ENST00000561818 RNF149Q8NC42 400 aa8.1□□□□□ -1.11
VPS39-204ENST00000561818 OR6J1Q8NGC5 347 aa8.1□□□□□ -1.11
VPS39-204ENST00000561818 PRPF31Q8WWY3 499 aaKnown RBP8.1□□□□□ -1.11
VPS39-204ENST00000561818 ZFP91Q96JP5 570 aaPredicted RBP8.1□□□□□ -1.11
VPS39-204ENST00000561818 FGD4Q96M96 766 aa8.1□□□□□ -1.11
VPS39-204ENST00000561818 FAM213AQ9BRX8 229 aa8.1□□□□□ -1.11
VPS39-204ENST00000561818 TCHPQ9BT92 498 aa8.1□□□□□ -1.11
VPS39-204ENST00000561818 ZNF518BQ9C0D4 1074 aa8.1□□□□□ -1.11
VPS39-204ENST00000561818 CCDC113Q9H0I3 377 aa8.1□□□□□ -1.11
VPS39-204ENST00000561818 AP5M1Q9H0R1 490 aa8.1□□□□□ -1.11
VPS39-204ENST00000561818 FZD8Q9H461 694 aa8.1□□□□□ -1.11
VPS39-204ENST00000561818 EFCC1Q9HA90 598 aa8.1□□□□□ -1.11
VPS39-204ENST00000561818 PLEKHA5Q9HAU0 1116 aa8.1□□□□□ -1.11
VPS39-204ENST00000561818 ARFGAP3Q9NP61 516 aa8.1□□□□□ -1.11
VPS39-204ENST00000561818 UBE2TQ9NPD8 197 aaPredicted RBP8.1□□□□□ -1.11
VPS39-204ENST00000561818 DERAQ9Y315 318 aa8.1□□□□□ -1.11
VPS39-204ENST00000561818 ADGRA2Q96PE1 1338 aa8.09□□□□□ -1.11
VPS39-204ENST00000561818 A0A087X0T9 212 aa8.09□□□□□ -1.11
VPS39-204ENST00000561818 LRRIQ3A6PVS8 624 aaPredicted RBP8.09□□□□□ -1.11
VPS39-204ENST00000561818 H3BRB1 525 aa8.09□□□□□ -1.11
VPS39-204ENST00000561818 CCDC188H7C350 402 aa8.09□□□□□ -1.11
VPS39-204ENST00000561818 SOCS7O14512 581 aa8.09□□□□□ -1.11
VPS39-204ENST00000561818 NDC80O14777 642 aa8.09□□□□□ -1.11
VPS39-204ENST00000561818 MED7O43513 233 aa8.09□□□□□ -1.11
VPS39-204ENST00000561818 MSCO60682 206 aa8.09□□□□□ -1.11
VPS39-204ENST00000561818 MTA2O94776 668 aa8.09□□□□□ -1.11
VPS39-204ENST00000561818 ERLIN2O94905 339 aa8.09□□□□□ -1.11
VPS39-204ENST00000561818 KIF4AO95239 1232 aa8.09□□□□□ -1.11
VPS39-204ENST00000561818 STAU1O95793 577 aaKnown RBP8.09□□□□□ -1.11
VPS39-204ENST00000561818 PGK2P07205 417 aa8.09□□□□□ -1.11
VPS39-204ENST00000561818 SLC10A3P09131 477 aa8.09□□□□□ -1.11
VPS39-204ENST00000561818 TMEM191BP0C7N4 346 aa8.09□□□□□ -1.11
VPS39-204ENST00000561818 FAM228BP0C875 321 aa8.09□□□□□ -1.11
VPS39-204ENST00000561818 TRIM49P0CI25 452 aa8.09□□□□□ -1.11
VPS39-204ENST00000561818 TRIM49CP0CI26 452 aa8.09□□□□□ -1.11
VPS39-204ENST00000561818 CYP2C8P10632 490 aa8.09□□□□□ -1.11
VPS39-204ENST00000561818 ATP4AP20648 1035 aa8.09□□□□□ -1.11
VPS39-204ENST00000561818 PAX3P23760 479 aa8.09□□□□□ -1.11
VPS39-204ENST00000561818 SLC1A1P43005 524 aa8.09□□□□□ -1.11
VPS39-204ENST00000561818 GCLMP48507 274 aa8.09□□□□□ -1.11
VPS39-204ENST00000561818 TNNC1P63316 161 aa8.09□□□□□ -1.11
VPS39-204ENST00000561818 GPC5P78333 572 aa8.09□□□□□ -1.11
VPS39-204ENST00000561818 CDR2Q01850 454 aa8.09□□□□□ -1.11
VPS39-204ENST00000561818 GFPT1Q06210 699 aaPredicted RBP8.09□□□□□ -1.11
VPS39-204ENST00000561818 PPFIA1Q13136 1202 aa8.09□□□□□ -1.11
VPS39-204ENST00000561818 BIRC3Q13489 604 aa8.09□□□□□ -1.11
VPS39-204ENST00000561818 TRPC3Q13507 836 aa8.09□□□□□ -1.11
VPS39-204ENST00000561818 RPS6KA1Q15418 735 aa8.09□□□□□ -1.11
VPS39-204ENST00000561818 STILQ15468 1287 aa8.09□□□□□ -1.11
VPS39-204ENST00000561818 Q3C1V9 767 aa8.09□□□□□ -1.11
VPS39-204ENST00000561818 LIN9Q5TKA1 542 aa8.09□□□□□ -1.11
VPS39-204ENST00000561818 ATF7IP2Q5U623 682 aa8.09□□□□□ -1.11
VPS39-204ENST00000561818 EFCAB12Q6NXP0 572 aa8.09□□□□□ -1.11
VPS39-204ENST00000561818 TAPT1Q6NXT6 567 aa8.09□□□□□ -1.11
VPS39-204ENST00000561818 TAF2Q6P1X5 1199 aa8.09□□□□□ -1.11
VPS39-204ENST00000561818 C15orf39Q6ZRI6 1047 aa8.09□□□□□ -1.11
VPS39-204ENST00000561818 RSRC2Q7L4I2 434 aaKnown RBP8.09□□□□□ -1.11
VPS39-204ENST00000561818 RSPH3Q86UC2 560 aa8.09□□□□□ -1.11
VPS39-204ENST00000561818 RASAL3Q86YV0 1011 aa8.09□□□□□ -1.11
VPS39-204ENST00000561818 CBWD2Q8IUF1 395 aa8.09□□□□□ -1.11
VPS39-204ENST00000561818 HACE1Q8IYU2 909 aa8.09□□□□□ -1.11
VPS39-204ENST00000561818 UBL4BQ8N7F7 174 aa8.09□□□□□ -1.11
VPS39-204ENST00000561818 LMO3Q8TAP4 145 aa8.09□□□□□ -1.11
VPS39-204ENST00000561818 MAIP1Q8WWC4 291 aa8.09□□□□□ -1.11
VPS39-204ENST00000561818 BSNDQ8WZ55 320 aa8.09□□□□□ -1.11
VPS39-204ENST00000561818 TMEM143Q96AN5 459 aa8.09□□□□□ -1.11
VPS39-204ENST00000561818 RPS6KC1Q96S38 1066 aa8.09□□□□□ -1.11
VPS39-204ENST00000561818 PCYT2Q99447 389 aa8.09□□□□□ -1.11
VPS39-204ENST00000561818 ACO2Q99798 780 aaKnown RBP8.09□□□□□ -1.11
VPS39-204ENST00000561818 AGPAT1Q99943 283 aa8.09□□□□□ -1.11
VPS39-204ENST00000561818 CARD6Q9BX69 1037 aa8.09□□□□□ -1.11
VPS39-204ENST00000561818 SEZ6LQ9BYH1 1024 aa8.09□□□□□ -1.11
VPS39-204ENST00000561818 GCOM2Q9BZD3 368 aaPredicted RBP8.09□□□□□ -1.11
VPS39-204ENST00000561818 FAM129AQ9BZQ8 928 aa8.09□□□□□ -1.11
VPS39-204ENST00000561818 ISCUQ9H1K1 167 aa8.09□□□□□ -1.11
VPS39-204ENST00000561818 PCIF1Q9H4Z3 704 aa8.09□□□□□ -1.11
VPS39-204ENST00000561818 TUT1Q9H6E5 874 aaKnown RBP8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms