RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 OGTO15294 1046 aa13.72□□□□□ -0.21
USP3-213ENST00000559711 ZC3H11AO75152 810 aaKnown RBP eCLIP13.72□□□□□ -0.21
USP3-213ENST00000559711 URI1O94763 535 aaPredicted RBP13.72□□□□□ -0.21
USP3-213ENST00000559711 C4BPAP04003 597 aaKnown RBP13.72□□□□□ -0.21
USP3-213ENST00000559711 PNMA6AP0CW24 399 aaPredicted RBP13.72□□□□□ -0.21
USP3-213ENST00000559711 PSMC4P43686 418 aa13.72□□□□□ -0.21
USP3-213ENST00000559711 CPT1AP50416 773 aa13.72□□□□□ -0.21
USP3-213ENST00000559711 PRPF4BQ13523 1007 aaKnown RBP13.72□□□□□ -0.21
USP3-213ENST00000559711 KIF22Q14807 665 aa13.72□□□□□ -0.21
USP3-213ENST00000559711 ATF7IP2Q5U623 682 aa13.72□□□□□ -0.21
USP3-213ENST00000559711 MPZL3Q6UWV2 235 aa13.72□□□□□ -0.21
USP3-213ENST00000559711 BRSK2Q8IWQ3 736 aa13.72□□□□□ -0.21
USP3-213ENST00000559711 KIAA0319LQ8IZA0 1049 aa13.72□□□□□ -0.21
USP3-213ENST00000559711 TCHPQ9BT92 498 aa13.72□□□□□ -0.21
USP3-213ENST00000559711 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.72□□□□□ -0.21
USP3-213ENST00000559711 INO80BQ9C086 356 aaPredicted RBP13.72□□□□□ -0.21
USP3-213ENST00000559711 PDE11AQ9HCR9 933 aa13.72□□□□□ -0.21
USP3-213ENST00000559711 AKT3Q9Y243 479 aa13.72□□□□□ -0.21
USP3-213ENST00000559711 TNFSF13BQ9Y275 285 aa13.72□□□□□ -0.21
USP3-213ENST00000559711 NRCAMQ92823 1304 aa13.72□□□□□ -0.21
USP3-213ENST00000559711 A0A087WZ62 844 aa13.72□□□□□ -0.21
USP3-213ENST00000559711 CTAGE9A4FU28 777 aa13.72□□□□□ -0.21
USP3-213ENST00000559711 HAS3O00219 553 aa13.72□□□□□ -0.21
USP3-213ENST00000559711 IQCF3P0C7M6 154 aa13.72□□□□□ -0.21
USP3-213ENST00000559711 LACTBP83111 547 aaPredicted RBP13.72□□□□□ -0.21
USP3-213ENST00000559711 TUBB2AQ13885 445 aa13.72□□□□□ -0.21
USP3-213ENST00000559711 BMS1Q14692 1282 aaKnown RBP13.72□□□□□ -0.21
USP3-213ENST00000559711 NAB2Q15742 525 aa13.72□□□□□ -0.21
USP3-213ENST00000559711 ENOX2Q16206 610 aaKnown RBP13.72□□□□□ -0.21
USP3-213ENST00000559711 AMHR2Q16671 573 aa13.72□□□□□ -0.21
USP3-213ENST00000559711 ARHGAP44Q17R89 818 aa13.72□□□□□ -0.21
USP3-213ENST00000559711 PAXIP1Q6ZW49 1069 aaPredicted RBP13.72□□□□□ -0.21
USP3-213ENST00000559711 VPS36Q86VN1 386 aa13.72□□□□□ -0.21
USP3-213ENST00000559711 REM2Q8IYK8 340 aaPredicted RBP13.72□□□□□ -0.21
USP3-213ENST00000559711 OLIG1Q8TAK6 271 aa13.72□□□□□ -0.21
USP3-213ENST00000559711 HELQQ8TDG4 1101 aa13.72□□□□□ -0.21
USP3-213ENST00000559711 ZNF668Q96K58 619 aaPredicted RBP13.72□□□□□ -0.21
USP3-213ENST00000559711 KREMEN1Q96MU8 473 aa13.72□□□□□ -0.21
USP3-213ENST00000559711 NT5C1BQ96P26 610 aa13.72□□□□□ -0.21
USP3-213ENST00000559711 MAP7D2Q96T17 732 aa13.72□□□□□ -0.21
USP3-213ENST00000559711 CGRRF1Q99675 332 aa13.72□□□□□ -0.21
USP3-213ENST00000559711 FDXACB1Q9BRP7 624 aaPredicted RBP13.72□□□□□ -0.21
USP3-213ENST00000559711 TUBB2BQ9BVA1 445 aa13.72□□□□□ -0.21
USP3-213ENST00000559711 AP5M1Q9H0R1 490 aa13.72□□□□□ -0.21
USP3-213ENST00000559711 SETD4Q9NVD3 440 aa13.72□□□□□ -0.21
USP3-213ENST00000559711 NAGPAQ9UK23 515 aa13.72□□□□□ -0.21
USP3-213ENST00000559711 CPSF3Q9UKF6 684 aaKnown RBP13.72□□□□□ -0.21
USP3-213ENST00000559711 ATP8B3O60423 1300 aa13.71□□□□□ -0.21
USP3-213ENST00000559711 MBLAC1A4D2B0 266 aaPredicted RBP13.71□□□□□ -0.21
USP3-213ENST00000559711 DDX3XO00571 662 aaKnown RBP eCLIP13.71□□□□□ -0.21
USP3-213ENST00000559711 DYNC1I1O14576 645 aa13.71□□□□□ -0.21
USP3-213ENST00000559711 B4GALT5O43286 388 aa13.71□□□□□ -0.21
USP3-213ENST00000559711 SLU7O95391 586 aaKnown RBP13.71□□□□□ -0.21
USP3-213ENST00000559711 VTNP04004 478 aa13.71□□□□□ -0.21
USP3-213ENST00000559711 AKR1A1P14550 325 aa13.71□□□□□ -0.21
USP3-213ENST00000559711 TNNI1P19237 187 aa13.71□□□□□ -0.21
USP3-213ENST00000559711 AP3M2P53677 418 aa13.71□□□□□ -0.21
USP3-213ENST00000559711 MFAP3P55082 362 aa13.71□□□□□ -0.21
USP3-213ENST00000559711 CDC42EP1Q00587 391 aa13.71□□□□□ -0.21
USP3-213ENST00000559711 KIAA0753Q2KHM9 967 aa13.71□□□□□ -0.21
USP3-213ENST00000559711 ZBTB33Q86T24 672 aa13.71□□□□□ -0.21
USP3-213ENST00000559711 ZNF410Q86VK4 478 aa13.71□□□□□ -0.21
USP3-213ENST00000559711 FAM71AQ8IYT1 594 aa13.71□□□□□ -0.21
USP3-213ENST00000559711 RNF10Q8N5U6 811 aaKnown RBP13.71□□□□□ -0.21
USP3-213ENST00000559711 SLC30A5Q8TAD4 765 aa13.71□□□□□ -0.21
USP3-213ENST00000559711 SHC3Q92529 594 aa13.71□□□□□ -0.21
USP3-213ENST00000559711 SECISBP2LQ93073 1101 aaKnown RBP13.71□□□□□ -0.21
USP3-213ENST00000559711 LENG1Q96BZ8 264 aaPredicted RBP13.71□□□□□ -0.21
USP3-213ENST00000559711 FAM81BQ96LP2 452 aa13.71□□□□□ -0.21
USP3-213ENST00000559711 NAPGQ99747 312 aaPredicted RBP13.71□□□□□ -0.21
USP3-213ENST00000559711 ARHGAP39Q9C0H5 1083 aa13.71□□□□□ -0.21
USP3-213ENST00000559711 PTPRJQ12913 1337 aa13.7□□□□□ -0.22
USP3-213ENST00000559711 BTNL10A8MVZ5 291 aa13.7□□□□□ -0.22
USP3-213ENST00000559711 ZEB2O60315 1214 aa13.7□□□□□ -0.22
USP3-213ENST00000559711 DUSP11O75319 330 aaKnown RBP13.7□□□□□ -0.22
USP3-213ENST00000559711 SMIM10L2AP0DMW4 78 aa13.7□□□□□ -0.22
USP3-213ENST00000559711 SMIM10L2BP0DMW5 78 aa13.7□□□□□ -0.22
USP3-213ENST00000559711 ADAM17P78536 824 aa13.7□□□□□ -0.22
USP3-213ENST00000559711 GCNT1Q02742 428 aa13.7□□□□□ -0.22
USP3-213ENST00000559711 MFSD10Q14728 455 aa13.7□□□□□ -0.22
USP3-213ENST00000559711 SURF1Q15526 300 aa13.7□□□□□ -0.22
USP3-213ENST00000559711 TDRD10Q5VZ19 366 aaKnown RBP13.7□□□□□ -0.22
USP3-213ENST00000559711 NFRKBQ6P4R8 1299 aa13.7□□□□□ -0.22
USP3-213ENST00000559711 ALKBH5Q6P6C2 394 aaKnown RBP13.7□□□□□ -0.22
USP3-213ENST00000559711 ENOSF1Q7L5Y1 443 aa13.7□□□□□ -0.22
USP3-213ENST00000559711 PPM1KQ8N3J5 372 aa13.7□□□□□ -0.22
USP3-213ENST00000559711 TRPV1Q8NER1 839 aa13.7□□□□□ -0.22
USP3-213ENST00000559711 LMBR1Q8WVP7 490 aa13.7□□□□□ -0.22
USP3-213ENST00000559711 KAT5Q92993 513 aa13.7□□□□□ -0.22
USP3-213ENST00000559711 MRFAP1Q9Y605 127 aa13.7□□□□□ -0.22
USP3-213ENST00000559711 DOCK3Q8IZD9 2030 aa13.7□□□□□ -0.22
USP3-213ENST00000559711 AOC2O75106 756 aa13.69□□□□□ -0.22
USP3-213ENST00000559711 VNN1O95497 513 aa13.69□□□□□ -0.22
USP3-213ENST00000559711 HLA-DRAP01903 254 aa13.69□□□□□ -0.22
USP3-213ENST00000559711 HARSP12081 509 aaKnown RBP13.69□□□□□ -0.22
USP3-213ENST00000559711 CYBAP13498 195 aa13.69□□□□□ -0.22
USP3-213ENST00000559711 TNFSF9P41273 254 aa13.69□□□□□ -0.22
USP3-213ENST00000559711 PSEN2P49810 448 aa13.69□□□□□ -0.22
USP3-213ENST00000559711 IRX5P78411 483 aaPredicted RBP13.69□□□□□ -0.22
USP3-213ENST00000559711 POU5F1Q01860 360 aaKnown RBP13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms