RNA–Protein interactions for RNA: ENST00000557507.1

CCDC88C-214, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 429 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-214ENST00000557507 PARD6AQ9NPB6 346 aa9.11□□□□□ -0.95
CCDC88C-214ENST00000557507 LTB4R2Q9NPC1 389 aa9.11□□□□□ -0.95
CCDC88C-214ENST00000557507 UBN1Q9NPG3 1134 aa9.11□□□□□ -0.95
CCDC88C-214ENST00000557507 XPNPEP1Q9NQW7 623 aa9.11□□□□□ -0.95
CCDC88C-214ENST00000557507 SH3GLB2Q9NR46 395 aa9.11□□□□□ -0.95
CCDC88C-214ENST00000557507 DDX25Q9UHL0 483 aaKnown RBP9.11□□□□□ -0.95
CCDC88C-214ENST00000557507 ADAM28Q9UKQ2 775 aa9.11□□□□□ -0.95
CCDC88C-214ENST00000557507 PCDHA4Q9UN74 947 aa9.11□□□□□ -0.95
CCDC88C-214ENST00000557507 PCDHGA2Q9Y5H1 932 aa9.11□□□□□ -0.95
CCDC88C-214ENST00000557507 ZFP37Q9Y6Q3 630 aaPredicted RBP9.11□□□□□ -0.95
CCDC88C-214ENST00000557507 ATRXP46100 2492 aa9.1□□□□□ -0.95
CCDC88C-214ENST00000557507 FAM170BA6NMN3 283 aa9.1□□□□□ -0.95
CCDC88C-214ENST00000557507 ZBTB39O15060 712 aa9.1□□□□□ -0.95
CCDC88C-214ENST00000557507 CCL16O15467 120 aa9.1□□□□□ -0.95
CCDC88C-214ENST00000557507 ADAM12O43184 909 aa9.1□□□□□ -0.95
CCDC88C-214ENST00000557507 B4GALT5O43286 388 aa9.1□□□□□ -0.95
CCDC88C-214ENST00000557507 LILRB5O75023 590 aa9.1□□□□□ -0.95
CCDC88C-214ENST00000557507 C8AP07357 584 aa9.1□□□□□ -0.95
CCDC88C-214ENST00000557507 HMGB1P09429 215 aaKnown RBP9.1□□□□□ -0.95
CCDC88C-214ENST00000557507 ARF4P18085 180 aaPredicted RBP9.1□□□□□ -0.95
CCDC88C-214ENST00000557507 TGM1P22735 817 aa9.1□□□□□ -0.95
CCDC88C-214ENST00000557507 AKAP5P24588 427 aa9.1□□□□□ -0.95
CCDC88C-214ENST00000557507 PTENP60484 403 aa9.1□□□□□ -0.95
CCDC88C-214ENST00000557507 PRKCQQ04759 706 aa9.1□□□□□ -0.95
CCDC88C-214ENST00000557507 MBTD1Q05BQ5 628 aa9.1□□□□□ -0.95
CCDC88C-214ENST00000557507 GRIK3Q13003 919 aa9.1□□□□□ -0.95
CCDC88C-214ENST00000557507 INF2Q27J81 1249 aa9.1□□□□□ -0.95
CCDC88C-214ENST00000557507 SLC44A4Q53GD3 710 aa9.1□□□□□ -0.95
CCDC88C-214ENST00000557507 NOTUMQ6P988 496 aa9.1□□□□□ -0.95
CCDC88C-214ENST00000557507 MOXD1Q6UVY6 613 aa9.1□□□□□ -0.95
CCDC88C-214ENST00000557507 MTSS1LQ765P7 747 aa9.1□□□□□ -0.95
CCDC88C-214ENST00000557507 CDR2LQ86X02 465 aaPredicted RBP9.1□□□□□ -0.95
CCDC88C-214ENST00000557507 NPAS3Q8IXF0 933 aa9.1□□□□□ -0.95
CCDC88C-214ENST00000557507 GPR65Q8IYL9 337 aa9.1□□□□□ -0.95
CCDC88C-214ENST00000557507 BLIDQ8IZY5 108 aa9.1□□□□□ -0.95
CCDC88C-214ENST00000557507 ASAP3Q8TDY4 903 aa9.1□□□□□ -0.95
CCDC88C-214ENST00000557507 NELL1Q92832 810 aa9.1□□□□□ -0.95
CCDC88C-214ENST00000557507 CCDC51Q96ER9 411 aa9.1□□□□□ -0.95
CCDC88C-214ENST00000557507 JAKMIP1Q96N16 626 aaKnown RBP9.1□□□□□ -0.95
CCDC88C-214ENST00000557507 AIFM3Q96NN9 605 aa9.1□□□□□ -0.95
CCDC88C-214ENST00000557507 CLSTN3Q9BQT9 956 aa9.1□□□□□ -0.95
CCDC88C-214ENST00000557507 LXNQ9BS40 222 aa9.1□□□□□ -0.95
CCDC88C-214ENST00000557507 COLEC11Q9BWP8 271 aa9.1□□□□□ -0.95
CCDC88C-214ENST00000557507 AGXT2Q9BYV1 514 aa9.1□□□□□ -0.95
CCDC88C-214ENST00000557507 CSRNP2Q9H175 543 aa9.1□□□□□ -0.95
CCDC88C-214ENST00000557507 UPF2Q9HAU5 1272 aaKnown RBP9.1□□□□□ -0.95
CCDC88C-214ENST00000557507 PRMT8Q9NR22 394 aaPredicted RBP9.1□□□□□ -0.95
CCDC88C-214ENST00000557507 HCFC1R1Q9NWW0 138 aa9.1□□□□□ -0.95
CCDC88C-214ENST00000557507 ZSCAN32Q9NX65 697 aa9.1□□□□□ -0.95
CCDC88C-214ENST00000557507 KLK14Q9P0G3 267 aa9.1□□□□□ -0.95
CCDC88C-214ENST00000557507 CDV3Q9UKY7 258 aaKnown RBP9.1□□□□□ -0.95
CCDC88C-214ENST00000557507 GIT1Q9Y2X7 761 aa9.1□□□□□ -0.95
CCDC88C-214ENST00000557507 MYO16Q9Y6X6 1858 aa9.1□□□□□ -0.95
CCDC88C-214ENST00000557507 IGF2RP11717 2491 aa9.1□□□□□ -0.95
CCDC88C-214ENST00000557507 ZFYVE26Q68DK2 2539 aa9.09□□□□□ -0.95
CCDC88C-214ENST00000557507 SF3B1O75533 1304 aaKnown RBP eCLIP9.09□□□□□ -0.95
CCDC88C-214ENST00000557507 NUP205Q92621 2012 aa9.09□□□□□ -0.95
CCDC88C-214ENST00000557507 DCDC2BA2VCK2 349 aa9.09□□□□□ -0.95
CCDC88C-214ENST00000557507 SHISA7A6NL88 538 aa9.09□□□□□ -0.95
CCDC88C-214ENST00000557507 INO80B-WBP1J3KQ70 363 aa9.09□□□□□ -0.95
CCDC88C-214ENST00000557507 NR1I2O75469 434 aa9.09□□□□□ -0.95
CCDC88C-214ENST00000557507 KIF4AO95239 1232 aa9.09□□□□□ -0.95
CCDC88C-214ENST00000557507 NPTXRO95502 500 aa9.09□□□□□ -0.95
CCDC88C-214ENST00000557507 P4HBP07237 508 aaKnown RBP9.09□□□□□ -0.95
CCDC88C-214ENST00000557507 HNRNPA1P09651 372 aaKnown RBP eCLIP9.09□□□□□ -0.95
CCDC88C-214ENST00000557507 AXLP30530 894 aa9.09□□□□□ -0.95
CCDC88C-214ENST00000557507 YWHABP31946 246 aaKnown RBP9.09□□□□□ -0.95
CCDC88C-214ENST00000557507 CCT2P78371 535 aaKnown RBP9.09□□□□□ -0.95
CCDC88C-214ENST00000557507 CREMQ03060 361 aa9.09□□□□□ -0.95
CCDC88C-214ENST00000557507 LMNB2Q03252 620 aa9.09□□□□□ -0.95
CCDC88C-214ENST00000557507 FZD5Q13467 585 aa9.09□□□□□ -0.95
CCDC88C-214ENST00000557507 CAPSQ13938 189 aa9.09□□□□□ -0.95
CCDC88C-214ENST00000557507 HSP90AA2PQ14568 343 aaPredicted RBP9.09□□□□□ -0.95
CCDC88C-214ENST00000557507 PSMD5Q16401 504 aa9.09□□□□□ -0.95
CCDC88C-214ENST00000557507 BMP2KLQ5H9B9 411 aa9.09□□□□□ -0.95
CCDC88C-214ENST00000557507 PPM1LQ5SGD2 360 aa9.09□□□□□ -0.95
CCDC88C-214ENST00000557507 LIN9Q5TKA1 542 aa9.09□□□□□ -0.95
CCDC88C-214ENST00000557507 BLOC1S2Q6QNY1 142 aa9.09□□□□□ -0.95
CCDC88C-214ENST00000557507 POTEHQ6S545 545 aa9.09□□□□□ -0.95
CCDC88C-214ENST00000557507 TPRG1Q6ZUI0 275 aa9.09□□□□□ -0.95
CCDC88C-214ENST00000557507 IFNLR1Q8IU57 520 aaPredicted RBP9.09□□□□□ -0.95
CCDC88C-214ENST00000557507 C4orf19Q8IY42 314 aa9.09□□□□□ -0.95
CCDC88C-214ENST00000557507 DAGLBQ8NCG7 672 aa9.09□□□□□ -0.95
CCDC88C-214ENST00000557507 SLC7A14Q8TBB6 771 aa9.09□□□□□ -0.95
CCDC88C-214ENST00000557507 TCP11Q8WWU5 503 aa9.09□□□□□ -0.95
CCDC88C-214ENST00000557507 ATRIPQ8WXE1 791 aa9.09□□□□□ -0.95
CCDC88C-214ENST00000557507 ING5Q8WYH8 240 aa9.09□□□□□ -0.95
CCDC88C-214ENST00000557507 PIK3R5Q8WYR1 880 aa9.09□□□□□ -0.95
CCDC88C-214ENST00000557507 KCNB2Q92953 911 aa9.09□□□□□ -0.95
CCDC88C-214ENST00000557507 CLDN23Q96B33 292 aa9.09□□□□□ -0.95
CCDC88C-214ENST00000557507 MTRQ99707 1265 aa9.09□□□□□ -0.95
CCDC88C-214ENST00000557507 PHF20Q9BVI0 1012 aa9.09□□□□□ -0.95
CCDC88C-214ENST00000557507 C22orf23Q9BZE7 217 aa9.09□□□□□ -0.95
CCDC88C-214ENST00000557507 OSBPL6Q9BZF3 934 aa9.09□□□□□ -0.95
CCDC88C-214ENST00000557507 TRIM6Q9C030 488 aaPredicted RBP9.09□□□□□ -0.95
CCDC88C-214ENST00000557507 CXCL16Q9H2A7 254 aa9.09□□□□□ -0.95
CCDC88C-214ENST00000557507 KCNMB3Q9NPA1 279 aa9.09□□□□□ -0.95
CCDC88C-214ENST00000557507 RGL1Q9NZL6 768 aa9.09□□□□□ -0.95
CCDC88C-214ENST00000557507 USP18Q9UMW8 372 aa9.09□□□□□ -0.95
CCDC88C-214ENST00000557507 POLIQ9UNA4 740 aa9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms