RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-223ENST00000556689 LARP6Q9BRS8 491 aaKnown RBP14.06□□□□□ -0.16
SHMT2-223ENST00000556689 PHF20Q9BVI0 1012 aa14.06□□□□□ -0.16
SHMT2-223ENST00000556689 NFKBIZQ9BYH8 718 aa14.06□□□□□ -0.16
SHMT2-223ENST00000556689 BCO2Q9BYV7 579 aa14.06□□□□□ -0.16
SHMT2-223ENST00000556689 ZSWIM6Q9HCJ5 1215 aa14.06□□□□□ -0.16
SHMT2-223ENST00000556689 XPNPEP1Q9NQW7 623 aa14.06□□□□□ -0.16
SHMT2-223ENST00000556689 DLL3Q9NYJ7 618 aa14.06□□□□□ -0.16
SHMT2-223ENST00000556689 PARP2Q9UGN5 583 aa14.06□□□□□ -0.16
SHMT2-223ENST00000556689 CYP46A1Q9Y6A2 500 aa14.06□□□□□ -0.16
SHMT2-223ENST00000556689 GVINP1Q7Z2Y8 2422 aa14.05□□□□□ -0.16
SHMT2-223ENST00000556689 A0A1B0GUA9 196 aa14.05□□□□□ -0.16
SHMT2-223ENST00000556689 POTEMA6NI47 508 aa14.05□□□□□ -0.16
SHMT2-223ENST00000556689 LAMTOR5O43504 91 aa14.05□□□□□ -0.16
SHMT2-223ENST00000556689 LRRN2O75325 713 aa14.05□□□□□ -0.16
SHMT2-223ENST00000556689 DGAT1O75907 488 aa14.05□□□□□ -0.16
SHMT2-223ENST00000556689 REC8O95072 547 aa14.05□□□□□ -0.16
SHMT2-223ENST00000556689 NPTXRO95502 500 aa14.05□□□□□ -0.16
SHMT2-223ENST00000556689 XBP1P17861 261 aa14.05□□□□□ -0.16
SHMT2-223ENST00000556689 NTHL1P78549 312 aa14.05□□□□□ -0.16
SHMT2-223ENST00000556689 PRKCQQ04759 706 aa14.05□□□□□ -0.16
SHMT2-223ENST00000556689 STK3Q13188 491 aa14.05□□□□□ -0.16
SHMT2-223ENST00000556689 CAPSQ13938 189 aa14.05□□□□□ -0.16
SHMT2-223ENST00000556689 HSP90AA2PQ14568 343 aaPredicted RBP14.05□□□□□ -0.16
SHMT2-223ENST00000556689 ZNF528Q3MIS6 628 aa14.05□□□□□ -0.16
SHMT2-223ENST00000556689 PPM1LQ5SGD2 360 aa14.05□□□□□ -0.16
SHMT2-223ENST00000556689 LIN9Q5TKA1 542 aa14.05□□□□□ -0.16
SHMT2-223ENST00000556689 PIK3AP1Q6ZUJ8 805 aa14.05□□□□□ -0.16
SHMT2-223ENST00000556689 MTSS1LQ765P7 747 aa14.05□□□□□ -0.16
SHMT2-223ENST00000556689 CEP57Q86XR8 500 aa14.05□□□□□ -0.16
SHMT2-223ENST00000556689 SUMF1Q8NBK3 374 aa14.05□□□□□ -0.16
SHMT2-223ENST00000556689 ASAP3Q8TDY4 903 aa14.05□□□□□ -0.16
SHMT2-223ENST00000556689 CLSTN3Q9BQT9 956 aa14.05□□□□□ -0.16
SHMT2-223ENST00000556689 TTPALQ9BTX7 342 aa14.05□□□□□ -0.16
SHMT2-223ENST00000556689 ANKEF1Q9NU02 776 aa14.05□□□□□ -0.16
SHMT2-223ENST00000556689 SPATA6Q9NWH7 488 aaPredicted RBP14.05□□□□□ -0.16
SHMT2-223ENST00000556689 SF3B1O75533 1304 aaKnown RBP eCLIP14.05□□□□□ -0.165e-8■■■■■ 37.4
SHMT2-223ENST00000556689 DNAH14Q0VDD8 3507 aa14.04□□□□□ -0.16
SHMT2-223ENST00000556689 FAM170BA6NMN3 283 aa14.04□□□□□ -0.16
SHMT2-223ENST00000556689 B4GALT5O43286 388 aa14.04□□□□□ -0.16
SHMT2-223ENST00000556689 XYLBO75191 536 aa14.04□□□□□ -0.16
SHMT2-223ENST00000556689 SPIRE1Q08AE8 756 aa14.04□□□□□ -0.16
SHMT2-223ENST00000556689 MLF2Q15773 248 aaPredicted RBP14.04□□□□□ -0.16
SHMT2-223ENST00000556689 RTP2Q5QGT7 225 aa14.04□□□□□ -0.16
SHMT2-223ENST00000556689 FAM171A1Q5VUB5 890 aa14.04□□□□□ -0.16
SHMT2-223ENST00000556689 CDR2LQ86X02 465 aaPredicted RBP14.04□□□□□ -0.16
SHMT2-223ENST00000556689 POTEDQ86YR6 584 aa14.04□□□□□ -0.16
SHMT2-223ENST00000556689 LNX1Q8TBB1 728 aaPredicted RBP14.04□□□□□ -0.16
SHMT2-223ENST00000556689 FGF13Q92913 245 aa14.04□□□□□ -0.16
SHMT2-223ENST00000556689 EIF2AK1Q9BQI3 630 aaKnown RBP14.04□□□□□ -0.16
SHMT2-223ENST00000556689 PAAF1Q9BRP4 392 aa14.04□□□□□ -0.16
SHMT2-223ENST00000556689 DDX23Q9BUQ8 820 aaKnown RBP14.04□□□□□ -0.16
SHMT2-223ENST00000556689 OSBPL6Q9BZF3 934 aa14.04□□□□□ -0.16
SHMT2-223ENST00000556689 CACNG4Q9UBN1 327 aa14.04□□□□□ -0.16
SHMT2-223ENST00000556689 FBXW11Q9UKB1 542 aa14.04□□□□□ -0.16
SHMT2-223ENST00000556689 FBXO4Q9UKT5 387 aa14.04□□□□□ -0.16
SHMT2-223ENST00000556689 PCDHA12Q9UN75 941 aa14.04□□□□□ -0.16
SHMT2-223ENST00000556689 POLIQ9UNA4 740 aa14.04□□□□□ -0.16
SHMT2-223ENST00000556689 GTF3C3Q9Y5Q9 886 aa14.04□□□□□ -0.16
SHMT2-223ENST00000556689 EP300Q09472 2414 aaPredicted RBP14.04□□□□□ -0.16
SHMT2-223ENST00000556689 CCL16O15467 120 aa14.03□□□□□ -0.16
SHMT2-223ENST00000556689 CDKL5O76039 1030 aa14.03□□□□□ -0.16
SHMT2-223ENST00000556689 LYPLA2O95372 231 aa14.03□□□□□ -0.16
SHMT2-223ENST00000556689 C8AP07357 584 aa14.03□□□□□ -0.16
SHMT2-223ENST00000556689 GLRA2P23416 452 aa14.03□□□□□ -0.16
SHMT2-223ENST00000556689 HOXA9P31269 272 aa14.03□□□□□ -0.16
SHMT2-223ENST00000556689 PFKPQ01813 784 aa14.03□□□□□ -0.16
SHMT2-223ENST00000556689 TUSC3Q13454 348 aa14.03□□□□□ -0.16
SHMT2-223ENST00000556689 UBXN2BQ14CS0 331 aa14.03□□□□□ -0.16
SHMT2-223ENST00000556689 RSPO4Q2I0M5 234 aaPredicted RBP14.03□□□□□ -0.16
SHMT2-223ENST00000556689 UVSSAQ2YD98 709 aa14.03□□□□□ -0.16
SHMT2-223ENST00000556689 VARS2Q5ST30 1063 aaKnown RBP14.03□□□□□ -0.16
SHMT2-223ENST00000556689 PDXDC1Q6P996 788 aa14.03□□□□□ -0.16
SHMT2-223ENST00000556689 RSPO2Q6UXX9 243 aaPredicted RBP14.03□□□□□ -0.16
SHMT2-223ENST00000556689 HASPINQ8TF76 798 aa14.03□□□□□ -0.16
SHMT2-223ENST00000556689 ATRIPQ8WXE1 791 aa14.03□□□□□ -0.16
SHMT2-223ENST00000556689 PIK3R5Q8WYR1 880 aa14.03□□□□□ -0.16
SHMT2-223ENST00000556689 HSD17B14Q9BPX1 270 aa14.03□□□□□ -0.16
SHMT2-223ENST00000556689 MTF2Q9Y483 593 aaPredicted RBP14.03□□□□□ -0.16
SHMT2-223ENST00000556689 ZMYM2Q9UBW7 1377 aa14.03□□□□□ -0.16
SHMT2-223ENST00000556689 ZNF292O60281 2723 aa14.02□□□□□ -0.16
SHMT2-223ENST00000556689 CASTOR2A6NHX0 329 aa14.02□□□□□ -0.17
SHMT2-223ENST00000556689 SPTLC1O15269 473 aa14.02□□□□□ -0.17
SHMT2-223ENST00000556689 THP07101 528 aa14.02□□□□□ -0.17
SHMT2-223ENST00000556689 XRCC6P12956 609 aaKnown RBP eCLIP14.02□□□□□ -0.17
SHMT2-223ENST00000556689 SDHBP21912 280 aa14.02□□□□□ -0.17
SHMT2-223ENST00000556689 MAGEA9P43362 315 aa14.02□□□□□ -0.17
SHMT2-223ENST00000556689 CSTF1Q05048 431 aaKnown RBP14.02□□□□□ -0.17
SHMT2-223ENST00000556689 ELAVL2Q12926 359 aaKnown RBP14.02□□□□□ -0.17
SHMT2-223ENST00000556689 PSMD5Q16401 504 aa14.02□□□□□ -0.17
SHMT2-223ENST00000556689 ZBTB41Q5SVQ8 909 aa14.02□□□□□ -0.17
SHMT2-223ENST00000556689 AXDND1Q5T1B0 1012 aaPredicted RBP14.02□□□□□ -0.17
SHMT2-223ENST00000556689 GPR161Q8N6U8 529 aaKnown RBP14.02□□□□□ -0.17
SHMT2-223ENST00000556689 ITFG1Q8TB96 612 aa14.02□□□□□ -0.17
SHMT2-223ENST00000556689 OXER1Q8TDS5 423 aa14.02□□□□□ -0.17
SHMT2-223ENST00000556689 CCDC43Q96MW1 224 aaKnown RBP14.02□□□□□ -0.17
SHMT2-223ENST00000556689 NELL2Q99435 816 aa14.02□□□□□ -0.17
SHMT2-223ENST00000556689 PPP4R2Q9NY27 417 aa14.02□□□□□ -0.17
SHMT2-223ENST00000556689 NCDNQ9UBB6 729 aa14.02□□□□□ -0.17
SHMT2-223ENST00000556689 PCDHGA2Q9Y5H1 932 aa14.02□□□□□ -0.17
SHMT2-223ENST00000556689 NCAM2O15394 837 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms