RNA–Protein interactions for RNA: ENST00000555634.5

SHMT2-220, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 964 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-220ENST00000555634 RDH13Q8NBN7 331 aa12.17□□□□□ -0.46
SHMT2-220ENST00000555634 CCDC150Q8NCX0 1101 aa12.17□□□□□ -0.46
SHMT2-220ENST00000555634 RSPH1Q8WYR4 309 aa12.17□□□□□ -0.46
SHMT2-220ENST00000555634 EEF2KMTQ96G04 330 aa12.17□□□□□ -0.46
SHMT2-220ENST00000555634 PCMTD1Q96MG8 357 aaPredicted RBP12.17□□□□□ -0.46
SHMT2-220ENST00000555634 ACAP3Q96P50 834 aa12.17□□□□□ -0.46
SHMT2-220ENST00000555634 IMPG2Q9BZV3 1241 aa12.17□□□□□ -0.46
SHMT2-220ENST00000555634 CDHR5Q9HBB8 845 aa12.17□□□□□ -0.46
SHMT2-220ENST00000555634 UBN1Q9NPG3 1134 aa12.17□□□□□ -0.46
SHMT2-220ENST00000555634 DMAC2Q9NW81 257 aa12.17□□□□□ -0.46
SHMT2-220ENST00000555634 LIMA1Q9UHB6 759 aaKnown RBP12.17□□□□□ -0.46
SHMT2-220ENST00000555634 TBX21Q9UL17 535 aa12.17□□□□□ -0.46
SHMT2-220ENST00000555634 GOLGA8IPA6NC78 632 aa12.16□□□□□ -0.46
SHMT2-220ENST00000555634 GOLGA8JA6NMD2 632 aa12.16□□□□□ -0.46
SHMT2-220ENST00000555634 TISP43B9A030 160 aa12.16□□□□□ -0.46
SHMT2-220ENST00000555634 KIAA0355O15063 1070 aa12.16□□□□□ -0.46
SHMT2-220ENST00000555634 AKAP3O75969 853 aa12.16□□□□□ -0.46
SHMT2-220ENST00000555634 TIMP1P01033 207 aa12.16□□□□□ -0.46
SHMT2-220ENST00000555634 TNNC2P02585 160 aa12.16□□□□□ -0.46
SHMT2-220ENST00000555634 TMEM191BP0C7N4 346 aa12.16□□□□□ -0.46
SHMT2-220ENST00000555634 ZNF18P17022 549 aa12.16□□□□□ -0.46
SHMT2-220ENST00000555634 ACOT2P49753 483 aa12.16□□□□□ -0.46
SHMT2-220ENST00000555634 OSTNP61366 133 aa12.16□□□□□ -0.46
SHMT2-220ENST00000555634 FANCCQ00597 558 aa12.16□□□□□ -0.46
SHMT2-220ENST00000555634 MYL7Q01449 175 aa12.16□□□□□ -0.46
SHMT2-220ENST00000555634 CYP24A1Q07973 514 aa12.16□□□□□ -0.46
SHMT2-220ENST00000555634 KRT31Q15323 416 aa12.16□□□□□ -0.46
SHMT2-220ENST00000555634 SARM1Q6SZW1 724 aa12.16□□□□□ -0.46
SHMT2-220ENST00000555634 BRSK2Q8IWQ3 736 aa12.16□□□□□ -0.46
SHMT2-220ENST00000555634 C7orf61Q8IZ16 206 aa12.16□□□□□ -0.46
SHMT2-220ENST00000555634 TMC2Q8TDI7 906 aa12.16□□□□□ -0.46
SHMT2-220ENST00000555634 CACTINQ8WUQ7 758 aaKnown RBP12.16□□□□□ -0.46
SHMT2-220ENST00000555634 CCDC127Q96BQ5 260 aa12.16□□□□□ -0.46
SHMT2-220ENST00000555634 FAM212AQ96EL1 285 aa12.16□□□□□ -0.46
SHMT2-220ENST00000555634 TSPAN18Q96SJ8 248 aa12.16□□□□□ -0.46
SHMT2-220ENST00000555634 LBHD1Q9BQE6 289 aaPredicted RBP12.16□□□□□ -0.46
SHMT2-220ENST00000555634 MTIF3Q9H2K0 278 aaKnown RBP12.16□□□□□ -0.46
SHMT2-220ENST00000555634 PLEKHA5Q9HAU0 1116 aa12.16□□□□□ -0.46
SHMT2-220ENST00000555634 FAM105AQ9NUU6 356 aa12.16□□□□□ -0.46
SHMT2-220ENST00000555634 TAB2Q9NYJ8 693 aa12.16□□□□□ -0.46
SHMT2-220ENST00000555634 LRFN2Q9ULH4 789 aa12.16□□□□□ -0.46
SHMT2-220ENST00000555634 FSD2A1L4K1 749 aa12.15□□□□□ -0.46
SHMT2-220ENST00000555634 LGALS16A8MUM7 142 aa12.15□□□□□ -0.46
SHMT2-220ENST00000555634 HOXA2O43364 376 aa12.15□□□□□ -0.46
SHMT2-220ENST00000555634 AFPP02771 609 aaKnown RBP12.15□□□□□ -0.46
SHMT2-220ENST00000555634 EDN1P05305 212 aa12.15□□□□□ -0.46
SHMT2-220ENST00000555634 STAG3L1P0CL83 205 aa12.15□□□□□ -0.46
SHMT2-220ENST00000555634 DLATP10515 647 aaKnown RBP12.15□□□□□ -0.46
SHMT2-220ENST00000555634 ITGA4P13612 1032 aa12.15□□□□□ -0.46
SHMT2-220ENST00000555634 TNNI1P19237 187 aa12.15□□□□□ -0.46
SHMT2-220ENST00000555634 ADSSP30520 456 aa12.15□□□□□ -0.46
SHMT2-220ENST00000555634 CYP2C18P33260 490 aa12.15□□□□□ -0.46
SHMT2-220ENST00000555634 COPB1P53618 953 aaKnown RBP12.15□□□□□ -0.46
SHMT2-220ENST00000555634 CCL23P55773 120 aa12.15□□□□□ -0.46
SHMT2-220ENST00000555634 PPIGQ13427 754 aaKnown RBP eCLIP12.15□□□□□ -0.464e-9■□□□□ 10.5
SHMT2-220ENST00000555634 IKBKEQ14164 716 aa12.15□□□□□ -0.46
SHMT2-220ENST00000555634 PSMD6Q15008 389 aa12.15□□□□□ -0.46
SHMT2-220ENST00000555634 VWA3BQ502W6 1294 aa12.15□□□□□ -0.46
SHMT2-220ENST00000555634 CNKSR3Q6P9H4 555 aa12.15□□□□□ -0.46
SHMT2-220ENST00000555634 UBE2Q1Q7Z7E8 422 aa12.15□□□□□ -0.46
SHMT2-220ENST00000555634 CDR2LQ86X02 465 aaPredicted RBP12.15□□□□□ -0.46
SHMT2-220ENST00000555634 NT5DC4Q86YG4 428 aa12.15□□□□□ -0.46
SHMT2-220ENST00000555634 CBWD2Q8IUF1 395 aa12.15□□□□□ -0.46
SHMT2-220ENST00000555634 WDR49Q8IV35 697 aa12.15□□□□□ -0.46
SHMT2-220ENST00000555634 TRIM59Q8IWR1 403 aa12.15□□□□□ -0.46
SHMT2-220ENST00000555634 DRC7Q8IY82 874 aa12.15□□□□□ -0.46
SHMT2-220ENST00000555634 ABI1Q8IZP0 508 aa12.15□□□□□ -0.46
SHMT2-220ENST00000555634 URGCPQ8TCY9 931 aa12.15□□□□□ -0.46
SHMT2-220ENST00000555634 ANKRD36BP1Q96IX9 119 aa12.15□□□□□ -0.46
SHMT2-220ENST00000555634 ZBTB45Q96K62 511 aaPredicted RBP12.15□□□□□ -0.46
SHMT2-220ENST00000555634 FBXL18Q96ME1 805 aa12.15□□□□□ -0.46
SHMT2-220ENST00000555634 CGRRF1Q99675 332 aa12.15□□□□□ -0.46
SHMT2-220ENST00000555634 ADAM2Q99965 735 aa12.15□□□□□ -0.46
SHMT2-220ENST00000555634 APOL6Q9BWW8 343 aa12.15□□□□□ -0.46
SHMT2-220ENST00000555634 IKZF4Q9H2S9 585 aa12.15□□□□□ -0.46
SHMT2-220ENST00000555634 PTPRHQ9HD43 1115 aa12.15□□□□□ -0.46
SHMT2-220ENST00000555634 PARP2Q9UGN5 583 aa12.15□□□□□ -0.46
SHMT2-220ENST00000555634 PCDHB2Q9Y5E7 798 aa12.15□□□□□ -0.46
SHMT2-220ENST00000555634 PHACTR2O75167 634 aa12.14□□□□□ -0.47
SHMT2-220ENST00000555634 CXCL8P10145 99 aa12.14□□□□□ -0.47
SHMT2-220ENST00000555634 ATP1A3P13637 1013 aa12.14□□□□□ -0.47
SHMT2-220ENST00000555634 IBSPP21815 317 aaPredicted RBP12.14□□□□□ -0.47
SHMT2-220ENST00000555634 HOXA11P31270 313 aaPredicted RBP12.14□□□□□ -0.47
SHMT2-220ENST00000555634 GTF2H1P32780 548 aa12.14□□□□□ -0.47
SHMT2-220ENST00000555634 CASP4P49662 377 aa12.14□□□□□ -0.47
SHMT2-220ENST00000555634 MXI1P50539 228 aa12.14□□□□□ -0.47
SHMT2-220ENST00000555634 MLLT1Q03111 559 aaPredicted RBP12.14□□□□□ -0.47
SHMT2-220ENST00000555634 UBXN1Q04323 297 aa12.14□□□□□ -0.47
SHMT2-220ENST00000555634 BIRC3Q13489 604 aa12.14□□□□□ -0.47
SHMT2-220ENST00000555634 TMEM132DQ14C87 1099 aa12.14□□□□□ -0.47
SHMT2-220ENST00000555634 PLEKHG4Q58EX7 1191 aa12.14□□□□□ -0.47
SHMT2-220ENST00000555634 EEF1DP3Q658K8 133 aa12.14□□□□□ -0.47
SHMT2-220ENST00000555634 MFSD5Q6N075 450 aa12.14□□□□□ -0.47
SHMT2-220ENST00000555634 SLC24A5Q71RS6 500 aa12.14□□□□□ -0.47
SHMT2-220ENST00000555634 DEFB128Q7Z7B8 93 aa12.14□□□□□ -0.47
SHMT2-220ENST00000555634 RNF169Q8NCN4 708 aa12.14□□□□□ -0.47
SHMT2-220ENST00000555634 DPF3Q92784 378 aa12.14□□□□□ -0.47
SHMT2-220ENST00000555634 IQCDQ96DY2 449 aa12.14□□□□□ -0.47
SHMT2-220ENST00000555634 SCLYQ96I15 445 aa12.14□□□□□ -0.47
SHMT2-220ENST00000555634 TRAIPQ9BWF2 469 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms