RNA–Protein interactions for RNA: ENST00000555351.1

VRK1-204, Transcript of vaccinia related kinase 1, humanhuman

TSL 2

Gene VRK1, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-204ENST00000555351 KIAA0319Q5VV43 1072 aa13.02□□□□□ -0.33
VRK1-204ENST00000555351 LLGL2Q6P1M3 1020 aa13.02□□□□□ -0.33
VRK1-204ENST00000555351 CABP7Q86V35 215 aa13.02□□□□□ -0.33
VRK1-204ENST00000555351 RNF135Q8IUD6 432 aa13.02□□□□□ -0.33
VRK1-204ENST00000555351 CALML4Q96GE6 196 aa13.02□□□□□ -0.33
VRK1-204ENST00000555351 KLHL5Q96PQ7 755 aa13.02□□□□□ -0.33
VRK1-204ENST00000555351 ACO2Q99798 780 aaKnown RBP13.02□□□□□ -0.33
VRK1-204ENST00000555351 LRFN3Q9BTN0 628 aa13.02□□□□□ -0.33
VRK1-204ENST00000555351 PTPRHQ9HD43 1115 aa13.02□□□□□ -0.33
VRK1-204ENST00000555351 C11orf16Q9NQ32 467 aa13.02□□□□□ -0.33
VRK1-204ENST00000555351 FNIP2Q9P278 1114 aa13.02□□□□□ -0.33
VRK1-204ENST00000555351 ADAM28Q9UKQ2 775 aa13.02□□□□□ -0.33
VRK1-204ENST00000555351 ODF2LQ9ULJ1 636 aa13.02□□□□□ -0.33
VRK1-204ENST00000555351 PRG3Q9Y2Y8 225 aaPredicted RBP13.02□□□□□ -0.33
VRK1-204ENST00000555351 NR2E1Q9Y466 385 aa13.02□□□□□ -0.33
VRK1-204ENST00000555351 PTGESO14684 152 aa13.01□□□□□ -0.33
VRK1-204ENST00000555351 PAPLNO95428 1278 aa13.01□□□□□ -0.33
VRK1-204ENST00000555351 EDN1P05305 212 aa13.01□□□□□ -0.33
VRK1-204ENST00000555351 CNPP09543 421 aaKnown RBP13.01□□□□□ -0.33
VRK1-204ENST00000555351 PLA2G4BP0C869 781 aa13.01□□□□□ -0.33
VRK1-204ENST00000555351 MCF2P10911 925 aa13.01□□□□□ -0.33
VRK1-204ENST00000555351 PDIA4P13667 645 aaKnown RBP13.01□□□□□ -0.33
VRK1-204ENST00000555351 PLS3P13797 630 aa13.01□□□□□ -0.33
VRK1-204ENST00000555351 ABCD1P33897 745 aa13.01□□□□□ -0.33
VRK1-204ENST00000555351 CA8P35219 290 aa13.01□□□□□ -0.33
VRK1-204ENST00000555351 GRM5P41594 1212 aa13.01□□□□□ -0.33
VRK1-204ENST00000555351 CLCN4P51793 760 aa13.01□□□□□ -0.33
VRK1-204ENST00000555351 ELAVL2Q12926 359 aaKnown RBP13.01□□□□□ -0.33
VRK1-204ENST00000555351 HSP90AA2PQ14568 343 aaPredicted RBP13.01□□□□□ -0.33
VRK1-204ENST00000555351 NAB2Q15742 525 aa13.01□□□□□ -0.33
VRK1-204ENST00000555351 USP41Q3LFD5 358 aa13.01□□□□□ -0.33
VRK1-204ENST00000555351 EEF1DP3Q658K8 133 aa13.01□□□□□ -0.33
VRK1-204ENST00000555351 KIAA1841Q6NSI8 718 aa13.01□□□□□ -0.33
VRK1-204ENST00000555351 FUT10Q6P4F1 479 aa13.01□□□□□ -0.33
VRK1-204ENST00000555351 ZPBP2Q6X784 338 aa13.01□□□□□ -0.33
VRK1-204ENST00000555351 CMASQ8NFW8 434 aaPredicted RBP13.01□□□□□ -0.33
VRK1-204ENST00000555351 AUTS2Q8WXX7 1259 aa13.01□□□□□ -0.33
VRK1-204ENST00000555351 FBXL18Q96ME1 805 aa13.01□□□□□ -0.33
VRK1-204ENST00000555351 UROC1Q96N76 676 aa13.01□□□□□ -0.33
VRK1-204ENST00000555351 KIFC3Q9BVG8 833 aa13.01□□□□□ -0.33
VRK1-204ENST00000555351 SFXN1Q9H9B4 322 aa13.01□□□□□ -0.33
VRK1-204ENST00000555351 TOPORSQ9NS56 1045 aaPredicted RBP13.01□□□□□ -0.33
VRK1-204ENST00000555351 SNTG2Q9NY99 539 aa13.01□□□□□ -0.33
VRK1-204ENST00000555351 LARSQ9P2J5 1176 aaKnown RBP13.01□□□□□ -0.33
VRK1-204ENST00000555351 SF3B1O75533 1304 aaKnown RBP eCLIP13.01□□□□□ -0.337e-6■■■■■ 33.4
VRK1-204ENST00000555351 VPS37CA5D8V6 355 aaPredicted RBP13□□□□□ -0.33
VRK1-204ENST00000555351 TMEM189-UBE2V1I3L0A0 370 aa13□□□□□ -0.33
VRK1-204ENST00000555351 COL9A1P20849 921 aa13□□□□□ -0.33
VRK1-204ENST00000555351 SYT1P21579 422 aa13□□□□□ -0.33
VRK1-204ENST00000555351 PROZP22891 400 aa13□□□□□ -0.33
VRK1-204ENST00000555351 KLRC2P26717 231 aa13□□□□□ -0.33
VRK1-204ENST00000555351 SF3A1Q15459 793 aaKnown RBP13□□□□□ -0.33
VRK1-204ENST00000555351 XKR4Q5GH76 650 aa13□□□□□ -0.33
VRK1-204ENST00000555351 ATAT1Q5SQI0 421 aa13□□□□□ -0.33
VRK1-204ENST00000555351 PDXDC1Q6P996 788 aa13□□□□□ -0.33
VRK1-204ENST00000555351 C15orf39Q6ZRI6 1047 aa13□□□□□ -0.33
VRK1-204ENST00000555351 EDAQ92838 391 aa13□□□□□ -0.33
VRK1-204ENST00000555351 CCDC94Q9BW85 323 aaPredicted RBP13□□□□□ -0.33
VRK1-204ENST00000555351 CCSER1Q9C0I3 900 aa13□□□□□ -0.33
VRK1-204ENST00000555351 KLK14Q9P0G3 267 aa13□□□□□ -0.33
VRK1-204ENST00000555351 USTQ9Y2C2 406 aa13□□□□□ -0.33
VRK1-204ENST00000555351 GTF3C5Q9Y5Q8 519 aaPredicted RBP13□□□□□ -0.33
VRK1-204ENST00000555351 K7ELQ4 463 aaPredicted RBP12.99□□□□□ -0.33
VRK1-204ENST00000555351 TADA2AO75478 443 aa12.99□□□□□ -0.33
VRK1-204ENST00000555351 TOM1L1O75674 476 aa12.99□□□□□ -0.33
VRK1-204ENST00000555351 MAPTP10636 758 aaKnown RBP12.99□□□□□ -0.33
VRK1-204ENST00000555351 EPCAMP16422 314 aa12.99□□□□□ -0.33
VRK1-204ENST00000555351 LIG1P18858 919 aa12.99□□□□□ -0.33
VRK1-204ENST00000555351 YARSP54577 528 aaKnown RBP12.99□□□□□ -0.33
VRK1-204ENST00000555351 STRN3Q13033 797 aa12.99□□□□□ -0.33
VRK1-204ENST00000555351 ZRSR1Q15695 479 aaKnown RBP12.99□□□□□ -0.33
VRK1-204ENST00000555351 ZNF568Q3ZCX4 644 aa12.99□□□□□ -0.33
VRK1-204ENST00000555351 MPZL3Q6UWV2 235 aa12.99□□□□□ -0.33
VRK1-204ENST00000555351 ALKAL1Q6UXT8 129 aa12.99□□□□□ -0.33
VRK1-204ENST00000555351 TAS1R3Q7RTX0 852 aa12.99□□□□□ -0.33
VRK1-204ENST00000555351 GPR149Q86SP6 731 aa12.99□□□□□ -0.33
VRK1-204ENST00000555351 TMEM161BQ8NDZ6 487 aa12.99□□□□□ -0.33
VRK1-204ENST00000555351 SNX21Q969T3 373 aa12.99□□□□□ -0.33
VRK1-204ENST00000555351 PPP1R10Q96QC0 940 aaKnown RBP12.99□□□□□ -0.33
VRK1-204ENST00000555351 GPR62Q9BZJ7 368 aa12.99□□□□□ -0.33
VRK1-204ENST00000555351 CDT1Q9H211 546 aa12.99□□□□□ -0.33
VRK1-204ENST00000555351 PLEKHA4Q9H4M7 779 aa12.99□□□□□ -0.33
VRK1-204ENST00000555351 ZSCAN16Q9H4T2 348 aaPredicted RBP12.99□□□□□ -0.33
VRK1-204ENST00000555351 POLD4Q9HCU8 107 aa12.99□□□□□ -0.33
VRK1-204ENST00000555351 SLC38A7Q9NVC3 462 aa12.99□□□□□ -0.33
VRK1-204ENST00000555351 MYH11P35749 1972 aa12.98□□□□□ -0.33
VRK1-204ENST00000555351 ABLIM1O14639 778 aa12.98□□□□□ -0.33
VRK1-204ENST00000555351 SLC16A4O15374 487 aa12.98□□□□□ -0.33
VRK1-204ENST00000555351 TEX28O15482 410 aa12.98□□□□□ -0.33
VRK1-204ENST00000555351 GLUD1P00367 558 aa12.98□□□□□ -0.33
VRK1-204ENST00000555351 SSBP05455 408 aaKnown RBP eCLIP12.98□□□□□ -0.33
VRK1-204ENST00000555351 ZNF131P52739 623 aa12.98□□□□□ -0.33
VRK1-204ENST00000555351 NCKAP1LP55160 1127 aa12.98□□□□□ -0.33
VRK1-204ENST00000555351 RESTQ13127 1097 aa12.98□□□□□ -0.33
VRK1-204ENST00000555351 PTPAQ15257 358 aa12.98□□□□□ -0.33
VRK1-204ENST00000555351 KYAT1Q16773 422 aa12.98□□□□□ -0.33
VRK1-204ENST00000555351 ARSHQ5FYA8 562 aa12.98□□□□□ -0.33
VRK1-204ENST00000555351 RARS2Q5T160 578 aaKnown RBP12.98□□□□□ -0.33
VRK1-204ENST00000555351 TAS1R1Q7RTX1 841 aa12.98□□□□□ -0.33
VRK1-204ENST00000555351 BMP8AQ7Z5Y6 402 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms