RNA–Protein interactions for RNA: ENST00000555116.5

SHMT2-217, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,885 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-217ENST00000555116 HVCN1Q96D96 273 aa15.57■□□□□ 0.08
SHMT2-217ENST00000555116 TCHPQ9BT92 498 aa15.57■□□□□ 0.08
SHMT2-217ENST00000555116 CXCL16Q9H2A7 254 aa15.57■□□□□ 0.08
SHMT2-217ENST00000555116 ALG13Q9NP73 1137 aaKnown RBP15.57■□□□□ 0.08
SHMT2-217ENST00000555116 DNAJB4Q9UDY4 337 aa15.57■□□□□ 0.08
SHMT2-217ENST00000555116 GDAQ9Y2T3 454 aa15.57■□□□□ 0.08
SHMT2-217ENST00000555116 BRWD1Q9NSI6 2320 aa15.57■□□□□ 0.08
SHMT2-217ENST00000555116 ANK1P16157 1881 aa15.56■□□□□ 0.08
SHMT2-217ENST00000555116 GTPBP6O43824 516 aaPredicted RBP15.56■□□□□ 0.08
SHMT2-217ENST00000555116 MYBP10242 640 aa15.56■□□□□ 0.08
SHMT2-217ENST00000555116 DNAJB1P25685 340 aa15.56■□□□□ 0.08
SHMT2-217ENST00000555116 LIG4P49917 911 aa15.56■□□□□ 0.08
SHMT2-217ENST00000555116 RNASELQ05823 741 aaKnown RBP15.56■□□□□ 0.08
SHMT2-217ENST00000555116 MCL1Q07820 350 aa15.56■□□□□ 0.08
SHMT2-217ENST00000555116 EHHADHQ08426 723 aa15.56■□□□□ 0.08
SHMT2-217ENST00000555116 NOLC1Q14978 699 aaKnown RBP eCLIP15.56■□□□□ 0.081e-8■■■□□ 15.5
SHMT2-217ENST00000555116 UNC13DQ70J99 1090 aa15.56■□□□□ 0.08
SHMT2-217ENST00000555116 SLC39A11Q8N1S5 342 aa15.56■□□□□ 0.08
SHMT2-217ENST00000555116 MAFAQ8NHW3 353 aaPredicted RBP15.56■□□□□ 0.08
SHMT2-217ENST00000555116 HPS3Q969F9 1004 aa15.56■□□□□ 0.08
SHMT2-217ENST00000555116 MRPL38Q96DV4 380 aaKnown RBP15.56■□□□□ 0.08
SHMT2-217ENST00000555116 BICD1Q96G01 975 aa15.56■□□□□ 0.08
SHMT2-217ENST00000555116 LMAN2LQ9H0V9 348 aa15.56■□□□□ 0.08
SHMT2-217ENST00000555116 GZF1Q9H116 711 aaPredicted RBP15.56■□□□□ 0.08
SHMT2-217ENST00000555116 ANKFY1Q9P2R3 1169 aa15.56■□□□□ 0.08
SHMT2-217ENST00000555116 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.55■□□□□ 0.08
SHMT2-217ENST00000555116 ZC3H11AO75152 810 aaKnown RBP eCLIP15.55■□□□□ 0.08
SHMT2-217ENST00000555116 FGF18O76093 207 aa15.55■□□□□ 0.08
SHMT2-217ENST00000555116 GALTP07902 379 aa15.55■□□□□ 0.08
SHMT2-217ENST00000555116 DSC1Q08554 894 aa15.55■□□□□ 0.08
SHMT2-217ENST00000555116 CAMK1Q14012 370 aa15.55■□□□□ 0.08
SHMT2-217ENST00000555116 THNSL1Q8IYQ7 743 aa15.55■□□□□ 0.08
SHMT2-217ENST00000555116 GBP3Q9H0R5 595 aa15.55■□□□□ 0.08
SHMT2-217ENST00000555116 IKZF4Q9H2S9 585 aa15.55■□□□□ 0.08
SHMT2-217ENST00000555116 SPG21Q9NZD8 308 aa15.55■□□□□ 0.08
SHMT2-217ENST00000555116 ANKRD63C9JTQ0 380 aa15.54■□□□□ 0.08
SHMT2-217ENST00000555116 PTGESO14684 152 aa15.54■□□□□ 0.08
SHMT2-217ENST00000555116 HNRNPDLO14979 420 aaKnown RBP15.54■□□□□ 0.08
SHMT2-217ENST00000555116 CLDN3O15551 220 aa15.54■□□□□ 0.08
SHMT2-217ENST00000555116 ZNF202O95125 648 aa15.54■□□□□ 0.08
SHMT2-217ENST00000555116 GCNT3O95395 438 aa15.54■□□□□ 0.08
SHMT2-217ENST00000555116 HARSP12081 509 aaKnown RBP15.54■□□□□ 0.08
SHMT2-217ENST00000555116 SLC11A1P49279 550 aa15.54■□□□□ 0.08
SHMT2-217ENST00000555116 PLCB3Q01970 1234 aa15.54■□□□□ 0.08
SHMT2-217ENST00000555116 KCNA1Q09470 495 aa15.54■□□□□ 0.08
SHMT2-217ENST00000555116 ALCAMQ13740 583 aa15.54■□□□□ 0.08
SHMT2-217ENST00000555116 L1TD1Q5T7N2 865 aaKnown RBP15.54■□□□□ 0.08
SHMT2-217ENST00000555116 KRBA2Q6ZNG9 492 aa15.54■□□□□ 0.08
SHMT2-217ENST00000555116 COLGALT2Q8IYK4 626 aa15.54■□□□□ 0.08
SHMT2-217ENST00000555116 GLIS3Q8NEA6 775 aa15.54■□□□□ 0.08
SHMT2-217ENST00000555116 TMEM175Q9BSA9 504 aa15.54■□□□□ 0.08
SHMT2-217ENST00000555116 CCDC94Q9BW85 323 aaPredicted RBP15.54■□□□□ 0.08
SHMT2-217ENST00000555116 PCDHB13Q9Y5F0 798 aa15.54■□□□□ 0.08
SHMT2-217ENST00000555116 PVALEFA0A1B0GWK0 134 aa15.54■□□□□ 0.08
SHMT2-217ENST00000555116 TISP43B9A030 160 aa15.54■□□□□ 0.08
SHMT2-217ENST00000555116 NT5C1B-RDH14C9J2C7 533 aa15.54■□□□□ 0.08
SHMT2-217ENST00000555116 MEFVO15553 781 aaPredicted RBP15.54■□□□□ 0.08
SHMT2-217ENST00000555116 KLRC4O43908 158 aa15.54■□□□□ 0.08
SHMT2-217ENST00000555116 PPM1AP35813 382 aa15.54■□□□□ 0.08
SHMT2-217ENST00000555116 ALDH7A1P49419 539 aaKnown RBP15.54■□□□□ 0.08
SHMT2-217ENST00000555116 OSTNP61366 133 aa15.54■□□□□ 0.08
SHMT2-217ENST00000555116 UBE3AQ05086 875 aa15.54■□□□□ 0.08
SHMT2-217ENST00000555116 GRIK3Q13003 919 aa15.54■□□□□ 0.08
SHMT2-217ENST00000555116 PTPROQ16827 1216 aa15.54■□□□□ 0.08
SHMT2-217ENST00000555116 TMEM173Q86WV6 379 aaPredicted RBP15.54■□□□□ 0.08
SHMT2-217ENST00000555116 FMR1NBQ8N0W7 255 aaPredicted RBP15.54■□□□□ 0.08
SHMT2-217ENST00000555116 POF1BQ8WVV4 589 aa15.54■□□□□ 0.08
SHMT2-217ENST00000555116 FAM193BQ96PV7 902 aaPredicted RBP15.54■□□□□ 0.08
SHMT2-217ENST00000555116 ACCSQ96QU6 501 aa15.54■□□□□ 0.08
SHMT2-217ENST00000555116 RPS6KC1Q96S38 1066 aa15.54■□□□□ 0.08
SHMT2-217ENST00000555116 STYXL1Q9Y6J8 313 aa15.54■□□□□ 0.08
SHMT2-217ENST00000555116 A0A0B4J269 797 aa15.53■□□□□ 0.08
SHMT2-217ENST00000555116 GOLGA6L4A6NEF3 574 aa15.53■□□□□ 0.08
SHMT2-217ENST00000555116 FAM189A1O60320 539 aa15.53■□□□□ 0.08
SHMT2-217ENST00000555116 PRPF6O94906 941 aaKnown RBP15.53■□□□□ 0.08
SHMT2-217ENST00000555116 NAB2Q15742 525 aa15.53■□□□□ 0.08
SHMT2-217ENST00000555116 SEZ6Q53EL9 994 aa15.53■□□□□ 0.08
SHMT2-217ENST00000555116 XKR4Q5GH76 650 aa15.53■□□□□ 0.08
SHMT2-217ENST00000555116 FAM26FQ5R3K3 315 aa15.53■□□□□ 0.08
SHMT2-217ENST00000555116 ALKAL1Q6UXT8 129 aa15.53■□□□□ 0.08
SHMT2-217ENST00000555116 EPM2AIP1Q7L775 607 aaPredicted RBP15.53■□□□□ 0.08
SHMT2-217ENST00000555116 MICALL1Q8N3F8 863 aa15.53■□□□□ 0.08
SHMT2-217ENST00000555116 ENGASEQ8NFI3 743 aa15.53■□□□□ 0.08
SHMT2-217ENST00000555116 BCL7CQ8WUZ0 217 aaPredicted RBP15.53■□□□□ 0.08
SHMT2-217ENST00000555116 ACAP3Q96P50 834 aa15.53■□□□□ 0.08
SHMT2-217ENST00000555116 LZTS1Q9Y250 596 aa15.53■□□□□ 0.08
SHMT2-217ENST00000555116 CARNS1A5YM72 827 aa15.52■□□□□ 0.08
SHMT2-217ENST00000555116 MYL1P05976 194 aa15.52■□□□□ 0.08
SHMT2-217ENST00000555116 PRR29P0C7W0 189 aa15.52■□□□□ 0.08
SHMT2-217ENST00000555116 MATR3P43243 847 aaKnown RBP eCLIP15.52■□□□□ 0.08
SHMT2-217ENST00000555116 SNW1Q13573 536 aaKnown RBP15.52■□□□□ 0.08
SHMT2-217ENST00000555116 CCDC85BQ15834 202 aaPredicted RBP15.52■□□□□ 0.08
SHMT2-217ENST00000555116 TMEM87AQ8NBN3 555 aa15.52■□□□□ 0.08
SHMT2-217ENST00000555116 SNX27Q96L92 541 aa15.52■□□□□ 0.08
SHMT2-217ENST00000555116 EXOC7Q9UPT5 735 aa15.52■□□□□ 0.08
SHMT2-217ENST00000555116 COL6A3P12111 3177 aa15.52■□□□□ 0.08
SHMT2-217ENST00000555116 OGTO15294 1046 aa15.52■□□□□ 0.07
SHMT2-217ENST00000555116 GADD45BO75293 160 aaPredicted RBP15.52■□□□□ 0.07
SHMT2-217ENST00000555116 ALDH2P05091 517 aa15.52■□□□□ 0.07
SHMT2-217ENST00000555116 HOXD13P35453 343 aa15.52■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms