RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 XKR4Q5GH76 650 aa17.63■□□□□ 0.41
CCDC88C-209ENST00000554872 ZPBP2Q6X784 338 aa17.63■□□□□ 0.41
CCDC88C-209ENST00000554872 LRRC15Q8TF66 581 aa17.63■□□□□ 0.41
CCDC88C-209ENST00000554872 EMILIN2Q9BXX0 1053 aa17.63■□□□□ 0.41
CCDC88C-209ENST00000554872 POLD4Q9HCU8 107 aa17.63■□□□□ 0.41
CCDC88C-209ENST00000554872 MRPL17Q9NRX2 175 aaKnown RBP17.63■□□□□ 0.41
CCDC88C-209ENST00000554872 PARP2Q9UGN5 583 aa17.63■□□□□ 0.41
CCDC88C-209ENST00000554872 CLIC4Q9Y696 253 aa17.63■□□□□ 0.41
CCDC88C-209ENST00000554872 LOC730098B7Z3J9 87 aa17.62■□□□□ 0.41
CCDC88C-209ENST00000554872 PAPLNO95428 1278 aa17.62■□□□□ 0.41
CCDC88C-209ENST00000554872 URODP06132 367 aa17.62■□□□□ 0.41
CCDC88C-209ENST00000554872 THP07101 528 aa17.62■□□□□ 0.41
CCDC88C-209ENST00000554872 MAPTP10636 758 aaKnown RBP17.62■□□□□ 0.41
CCDC88C-209ENST00000554872 MCF2P10911 925 aa17.62■□□□□ 0.41
CCDC88C-209ENST00000554872 PLCG1P19174 1290 aa17.62■□□□□ 0.41
CCDC88C-209ENST00000554872 ABCD1P33897 745 aa17.62■□□□□ 0.41
CCDC88C-209ENST00000554872 NCKAP1LP55160 1127 aa17.62■□□□□ 0.41
CCDC88C-209ENST00000554872 DSG1Q02413 1049 aa17.62■□□□□ 0.41
CCDC88C-209ENST00000554872 RAD54LQ92698 747 aa17.62■□□□□ 0.41
CCDC88C-209ENST00000554872 PHF7Q9BWX1 381 aaPredicted RBP17.62■□□□□ 0.41
CCDC88C-209ENST00000554872 CDT1Q9H211 546 aa17.62■□□□□ 0.41
CCDC88C-209ENST00000554872 RXFP1Q9HBX9 757 aa17.62■□□□□ 0.41
CCDC88C-209ENST00000554872 STK17AQ9UEE5 414 aa17.62■□□□□ 0.41
CCDC88C-209ENST00000554872 ADAM28Q9UKQ2 775 aa17.62■□□□□ 0.41
CCDC88C-209ENST00000554872 PRG3Q9Y2Y8 225 aaPredicted RBP17.62■□□□□ 0.41
CCDC88C-209ENST00000554872 GTF3C3Q9Y5Q9 886 aa17.62■□□□□ 0.41
CCDC88C-209ENST00000554872 TMEM189-UBE2V1I3L0A0 370 aa17.61■□□□□ 0.41
CCDC88C-209ENST00000554872 SLC16A4O15374 487 aa17.61■□□□□ 0.41
CCDC88C-209ENST00000554872 TOM1L1O75674 476 aa17.61■□□□□ 0.41
CCDC88C-209ENST00000554872 SSBP05455 408 aaKnown RBP eCLIP17.61■□□□□ 0.41
CCDC88C-209ENST00000554872 CNPP09543 421 aaKnown RBP17.61■□□□□ 0.41
CCDC88C-209ENST00000554872 SSTR3P32745 418 aaPredicted RBP17.61■□□□□ 0.41
CCDC88C-209ENST00000554872 NASPP49321 788 aaPredicted RBP17.61■□□□□ 0.41
CCDC88C-209ENST00000554872 GLUD2P49448 558 aa17.61■□□□□ 0.41
CCDC88C-209ENST00000554872 CREMQ03060 361 aa17.61■□□□□ 0.41
CCDC88C-209ENST00000554872 HSP90AA2PQ14568 343 aaPredicted RBP17.61■□□□□ 0.41
CCDC88C-209ENST00000554872 SLC39A14Q15043 492 aa17.61■□□□□ 0.41
CCDC88C-209ENST00000554872 KARSQ15046 597 aaKnown RBP17.61■□□□□ 0.41
CCDC88C-209ENST00000554872 ZNF568Q3ZCX4 644 aa17.61■□□□□ 0.41
CCDC88C-209ENST00000554872 KIAA0319Q5VV43 1072 aa17.61■□□□□ 0.41
CCDC88C-209ENST00000554872 MPZL3Q6UWV2 235 aa17.61■□□□□ 0.41
CCDC88C-209ENST00000554872 AUTS2Q8WXX7 1259 aa17.61■□□□□ 0.41
CCDC88C-209ENST00000554872 LARP4BQ92615 738 aaKnown RBP17.61■□□□□ 0.41
CCDC88C-209ENST00000554872 NECTIN4Q96NY8 510 aa17.61■□□□□ 0.41
CCDC88C-209ENST00000554872 KLHL5Q96PQ7 755 aa17.61■□□□□ 0.41
CCDC88C-209ENST00000554872 PPP1R10Q96QC0 940 aaKnown RBP17.61■□□□□ 0.41
CCDC88C-209ENST00000554872 PLIN2Q99541 437 aa17.61■□□□□ 0.41
CCDC88C-209ENST00000554872 REEP2Q9BRK0 252 aa17.61■□□□□ 0.41
CCDC88C-209ENST00000554872 RHOBTB2Q9BYZ6 727 aa17.61■□□□□ 0.41
CCDC88C-209ENST00000554872 ADAM7Q9H2U9 754 aa17.61■□□□□ 0.41
CCDC88C-209ENST00000554872 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP17.61■□□□□ 0.41
CCDC88C-209ENST00000554872 TOPORSQ9NS56 1045 aaPredicted RBP17.61■□□□□ 0.41
CCDC88C-209ENST00000554872 KLK14Q9P0G3 267 aa17.61■□□□□ 0.41
CCDC88C-209ENST00000554872 USP20Q9Y2K6 914 aa17.61■□□□□ 0.41
CCDC88C-209ENST00000554872 MYH11P35749 1972 aa17.6■□□□□ 0.41
CCDC88C-209ENST00000554872 ALADP13716 330 aa17.6■□□□□ 0.41
CCDC88C-209ENST00000554872 LIG1P18858 919 aa17.6■□□□□ 0.41
CCDC88C-209ENST00000554872 CLCN4P51793 760 aa17.6■□□□□ 0.41
CCDC88C-209ENST00000554872 STRN3Q13033 797 aa17.6■□□□□ 0.41
CCDC88C-209ENST00000554872 FUT10Q6P4F1 479 aa17.6■□□□□ 0.41
CCDC88C-209ENST00000554872 ALKAL1Q6UXT8 129 aa17.6■□□□□ 0.41
CCDC88C-209ENST00000554872 GPBP1Q86WP2 473 aa17.6■□□□□ 0.41
CCDC88C-209ENST00000554872 HSCBQ8IWL3 235 aa17.6■□□□□ 0.41
CCDC88C-209ENST00000554872 KHSRPQ92945 711 aaKnown RBP eCLIP17.6■□□□□ 0.41
CCDC88C-209ENST00000554872 UROC1Q96N76 676 aa17.6■□□□□ 0.41
CCDC88C-209ENST00000554872 CCDC94Q9BW85 323 aaPredicted RBP17.6■□□□□ 0.41
CCDC88C-209ENST00000554872 TARS2Q9BW92 718 aaKnown RBP17.6■□□□□ 0.41
CCDC88C-209ENST00000554872 PARVGQ9HBI0 331 aa17.6■□□□□ 0.41
CCDC88C-209ENST00000554872 FNIP2Q9P278 1114 aa17.6■□□□□ 0.41
CCDC88C-209ENST00000554872 SF3B1O75533 1304 aaKnown RBP eCLIP17.6■□□□□ 0.414e-6■■■■■ 113.6
CCDC88C-209ENST00000554872 SFI1A8K8P3 1242 aa17.59■□□□□ 0.41
CCDC88C-209ENST00000554872 PIGRP01833 764 aa17.59■□□□□ 0.41
CCDC88C-209ENST00000554872 ADH1AP07327 375 aa17.59■□□□□ 0.41
CCDC88C-209ENST00000554872 DDIT3P35638 169 aa17.59■□□□□ 0.41
CCDC88C-209ENST00000554872 MCL1Q07820 350 aa17.59■□□□□ 0.41
CCDC88C-209ENST00000554872 ELAVL2Q12926 359 aaKnown RBP17.59■□□□□ 0.41
CCDC88C-209ENST00000554872 USP41Q3LFD5 358 aa17.59■□□□□ 0.41
CCDC88C-209ENST00000554872 LLGL2Q6P1M3 1020 aa17.59■□□□□ 0.41
CCDC88C-209ENST00000554872 TMEM87AQ8NBN3 555 aa17.59■□□□□ 0.41
CCDC88C-209ENST00000554872 USP28Q96RU2 1077 aa17.59■□□□□ 0.41
CCDC88C-209ENST00000554872 ST6GALNAC4Q9H4F1 302 aa17.59■□□□□ 0.41
CCDC88C-209ENST00000554872 CCDC39Q9UFE4 941 aa17.59■□□□□ 0.41
CCDC88C-209ENST00000554872 DPP7Q9UHL4 492 aa17.59■□□□□ 0.41
CCDC88C-209ENST00000554872 GTF3C5Q9Y5Q8 519 aaPredicted RBP17.59■□□□□ 0.41
CCDC88C-209ENST00000554872 MYH15Q9Y2K3 1946 aa17.59■□□□□ 0.41
CCDC88C-209ENST00000554872 F8W810 466 aa17.58■□□□□ 0.4
CCDC88C-209ENST00000554872 DCXO43602 365 aa17.58■□□□□ 0.4
CCDC88C-209ENST00000554872 GPR37L1O60883 481 aa17.58■□□□□ 0.4
CCDC88C-209ENST00000554872 KCNE1P15382 129 aa17.58■□□□□ 0.4
CCDC88C-209ENST00000554872 EPCAMP16422 314 aa17.58■□□□□ 0.4
CCDC88C-209ENST00000554872 TXLNAP40222 546 aa17.58■□□□□ 0.4
CCDC88C-209ENST00000554872 MTHFRP42898 656 aa17.58■□□□□ 0.4
CCDC88C-209ENST00000554872 YARSP54577 528 aaKnown RBP17.58■□□□□ 0.4
CCDC88C-209ENST00000554872 RAD51AP2Q09MP3 1159 aa17.58■□□□□ 0.4
CCDC88C-209ENST00000554872 MCM6Q14566 821 aa17.58■□□□□ 0.4
CCDC88C-209ENST00000554872 NOLC1Q14978 699 aaKnown RBP eCLIP17.58■□□□□ 0.4
CCDC88C-209ENST00000554872 HERC4Q5GLZ8 1057 aaPredicted RBP17.58■□□□□ 0.4
CCDC88C-209ENST00000554872 KIAA1841Q6NSI8 718 aa17.58■□□□□ 0.4
CCDC88C-209ENST00000554872 CES5AQ6NT32 575 aa17.58■□□□□ 0.4
CCDC88C-209ENST00000554872 FAM173BQ6P4H8 233 aa17.58■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms