RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 MAML3Q96JK9 1138 aa28.43■■■□□ 2.14
CCDC88C-205ENST00000553403 MMS19Q96T76 1030 aa28.43■■■□□ 2.14
CCDC88C-205ENST00000553403 RBAKQ9NYW8 714 aaPredicted RBP28.43■■■□□ 2.14
CCDC88C-205ENST00000553403 GRID2IPA4D2P6 1211 aa28.42■■■□□ 2.14
CCDC88C-205ENST00000553403 TMEM253P0C7T8 217 aa28.42■■■□□ 2.14
CCDC88C-205ENST00000553403 ACOT2P49753 483 aa28.42■■■□□ 2.14
CCDC88C-205ENST00000553403 GRM1Q13255 1194 aa28.42■■■□□ 2.14
CCDC88C-205ENST00000553403 MAPK6Q16659 721 aa28.42■■■□□ 2.14
CCDC88C-205ENST00000553403 ZACNQ401N2 412 aa28.42■■■□□ 2.14
CCDC88C-205ENST00000553403 KAT5Q92993 513 aa28.42■■■□□ 2.14
CCDC88C-205ENST00000553403 PARD6BQ9BYG5 372 aa28.42■■■□□ 2.14
CCDC88C-205ENST00000553403 ANKFY1Q9P2R3 1169 aa28.42■■■□□ 2.14
CCDC88C-205ENST00000553403 TOM1L1O75674 476 aa28.42■■■□□ 2.14
CCDC88C-205ENST00000553403 C4BPAP04003 597 aaKnown RBP28.42■■■□□ 2.14
CCDC88C-205ENST00000553403 PRKCBP05771 671 aa28.42■■■□□ 2.14
CCDC88C-205ENST00000553403 SRGAP2CP0DJJ0 459 aa28.42■■■□□ 2.14
CCDC88C-205ENST00000553403 CLCN6P51797 869 aa28.42■■■□□ 2.14
CCDC88C-205ENST00000553403 GALCP54803 685 aa28.42■■■□□ 2.14
CCDC88C-205ENST00000553403 GCNT1Q02742 428 aa28.42■■■□□ 2.14
CCDC88C-205ENST00000553403 PRPF4BQ13523 1007 aaKnown RBP28.42■■■□□ 2.14
CCDC88C-205ENST00000553403 MEI1Q5TIA1 1274 aa28.42■■■□□ 2.14
CCDC88C-205ENST00000553403 CREG2Q8IUH2 290 aa28.42■■■□□ 2.14
CCDC88C-205ENST00000553403 MSL3Q8N5Y2 521 aaKnown RBP28.42■■■□□ 2.14
CCDC88C-205ENST00000553403 CAGE1Q8TC20 777 aa28.42■■■□□ 2.14
CCDC88C-205ENST00000553403 CAPZA3Q96KX2 299 aa28.42■■■□□ 2.14
CCDC88C-205ENST00000553403 CGRRF1Q99675 332 aa28.42■■■□□ 2.14
CCDC88C-205ENST00000553403 ACO2Q99798 780 aaKnown RBP28.42■■■□□ 2.14
CCDC88C-205ENST00000553403 RNPEPQ9H4A4 650 aa28.42■■■□□ 2.14
CCDC88C-205ENST00000553403 ZCCHC17Q9NP64 241 aaKnown RBP28.42■■■□□ 2.14
CCDC88C-205ENST00000553403 TLL2Q9Y6L7 1015 aa28.42■■■□□ 2.14
CCDC88C-205ENST00000553403 ZNF236Q9UL36 1845 aa28.41■■■□□ 2.14
CCDC88C-205ENST00000553403 MYH10P35580 1976 aa28.41■■■□□ 2.14
CCDC88C-205ENST00000553403 NCANO14594 1321 aa28.41■■■□□ 2.14
CCDC88C-205ENST00000553403 COL1A2P08123 1366 aa28.41■■■□□ 2.14
CCDC88C-205ENST00000553403 PCNTO95613 3336 aa28.41■■■□□ 2.14
CCDC88C-205ENST00000553403 ZNF185O15231 689 aa28.41■■■□□ 2.14
CCDC88C-205ENST00000553403 CLDN3O15551 220 aa28.41■■■□□ 2.14
CCDC88C-205ENST00000553403 ADCYAP1R1P41586 468 aa28.41■■■□□ 2.14
CCDC88C-205ENST00000553403 EFCAB12Q6NXP0 572 aa28.41■■■□□ 2.14
CCDC88C-205ENST00000553403 LMBR1Q8WVP7 490 aa28.41■■■□□ 2.14
CCDC88C-205ENST00000553403 TRAPPC12Q8WVT3 735 aa28.41■■■□□ 2.14
CCDC88C-205ENST00000553403 EPC1Q9H2F5 836 aa28.41■■■□□ 2.14
CCDC88C-205ENST00000553403 SLC5A4Q9NY91 659 aa28.41■■■□□ 2.14
CCDC88C-205ENST00000553403 TULP1O00294 542 aaPredicted RBP28.4■■■□□ 2.14
CCDC88C-205ENST00000553403 MAGEB2O15479 319 aa28.4■■■□□ 2.14
CCDC88C-205ENST00000553403 C22orf31O95567 290 aa28.4■■■□□ 2.14
CCDC88C-205ENST00000553403 TUBBP07437 444 aa28.4■■■□□ 2.14
CCDC88C-205ENST00000553403 TNNI1P19237 187 aa28.4■■■□□ 2.14
CCDC88C-205ENST00000553403 HUNKP57058 714 aa28.4■■■□□ 2.14
CCDC88C-205ENST00000553403 ITIH3Q06033 890 aa28.4■■■□□ 2.14
CCDC88C-205ENST00000553403 GJC2Q5T442 439 aaPredicted RBP28.4■■■□□ 2.14
CCDC88C-205ENST00000553403 AFG1LQ8WV93 481 aa28.4■■■□□ 2.14
CCDC88C-205ENST00000553403 ABHD16BQ9H3Z7 469 aa28.4■■■□□ 2.14
CCDC88C-205ENST00000553403 ANKZF1Q9H8Y5 726 aa28.4■■■□□ 2.14
CCDC88C-205ENST00000553403 PDE11AQ9HCR9 933 aa28.4■■■□□ 2.14
CCDC88C-205ENST00000553403 RNF14Q9UBS8 474 aa28.4■■■□□ 2.14
CCDC88C-205ENST00000553403 NOP2P46087 812 aaKnown RBP28.39■■■□□ 2.14
CCDC88C-205ENST00000553403 POU5F1BQ06416 359 aa28.39■■■□□ 2.14
CCDC88C-205ENST00000553403 NFRKBQ6P4R8 1299 aa28.39■■■□□ 2.14
CCDC88C-205ENST00000553403 RHPN2Q8IUC4 686 aa28.39■■■□□ 2.14
CCDC88C-205ENST00000553403 TPCN2Q8NHX9 752 aa28.39■■■□□ 2.14
CCDC88C-205ENST00000553403 TINF2Q9BSI4 451 aa28.39■■■□□ 2.14
CCDC88C-205ENST00000553403 NFKBIZQ9BYH8 718 aa28.39■■■□□ 2.14
CCDC88C-205ENST00000553403 CNTNAP2Q9UHC6 1331 aa28.39■■■□□ 2.14
CCDC88C-205ENST00000553403 NCK2O43639 380 aa28.38■■■□□ 2.13
CCDC88C-205ENST00000553403 PPFIA4O75335 1185 aa28.38■■■□□ 2.13
CCDC88C-205ENST00000553403 INSRRP14616 1297 aa28.38■■■□□ 2.13
CCDC88C-205ENST00000553403 DUSP28Q4G0W2 176 aa28.38■■■□□ 2.13
CCDC88C-205ENST00000553403 IQSEC1Q6DN90 963 aa28.38■■■□□ 2.13
CCDC88C-205ENST00000553403 BRSK2Q8IWQ3 736 aa28.38■■■□□ 2.13
CCDC88C-205ENST00000553403 NOA1Q8NC60 698 aaKnown RBP28.38■■■□□ 2.13
CCDC88C-205ENST00000553403 COG1Q8WTW3 980 aa28.38■■■□□ 2.13
CCDC88C-205ENST00000553403 SLC20A1Q8WUM9 679 aa28.38■■■□□ 2.13
CCDC88C-205ENST00000553403 CAPNS2Q96L46 248 aa28.38■■■□□ 2.13
CCDC88C-205ENST00000553403 FZD8Q9H461 694 aa28.38■■■□□ 2.13
CCDC88C-205ENST00000553403 RAB21Q9UL25 225 aa28.38■■■□□ 2.13
CCDC88C-205ENST00000553403 MANSC4A6NHS7 340 aaPredicted RBP28.38■■■□□ 2.13
CCDC88C-205ENST00000553403 PDE2AO00408 941 aaPredicted RBP28.38■■■□□ 2.13
CCDC88C-205ENST00000553403 SGPL1O95470 568 aa28.38■■■□□ 2.13
CCDC88C-205ENST00000553403 HLA-DRAP01903 254 aa28.38■■■□□ 2.13
CCDC88C-205ENST00000553403 HOXD8P13378 290 aaPredicted RBP28.38■■■□□ 2.13
CCDC88C-205ENST00000553403 USP8P40818 1118 aa28.38■■■□□ 2.13
CCDC88C-205ENST00000553403 AP3M2P53677 418 aa28.38■■■□□ 2.13
CCDC88C-205ENST00000553403 WNT7BP56706 349 aa28.38■■■□□ 2.13
CCDC88C-205ENST00000553403 PTENP60484 403 aa28.38■■■□□ 2.13
CCDC88C-205ENST00000553403 MCL1Q07820 350 aa28.38■■■□□ 2.13
CCDC88C-205ENST00000553403 ACVR2BQ13705 512 aa28.38■■■□□ 2.13
CCDC88C-205ENST00000553403 BRD3Q15059 726 aa28.38■■■□□ 2.13
CCDC88C-205ENST00000553403 WDR44Q5JSH3 913 aa28.38■■■□□ 2.13
CCDC88C-205ENST00000553403 ZBTB41Q5SVQ8 909 aa28.38■■■□□ 2.13
CCDC88C-205ENST00000553403 TDRD10Q5VZ19 366 aaKnown RBP28.38■■■□□ 2.13
CCDC88C-205ENST00000553403 RASAL3Q86YV0 1011 aa28.38■■■□□ 2.13
CCDC88C-205ENST00000553403 RPUSD2Q8IZ73 545 aaKnown RBP28.38■■■□□ 2.13
CCDC88C-205ENST00000553403 LRRC57Q8N9N7 239 aa28.38■■■□□ 2.13
CCDC88C-205ENST00000553403 EPS8L1Q8TE68 723 aa28.38■■■□□ 2.13
CCDC88C-205ENST00000553403 CTNNBL1Q8WYA6 563 aaPredicted RBP28.38■■■□□ 2.13
CCDC88C-205ENST00000553403 RFFLQ8WZ73 363 aa28.38■■■□□ 2.13
CCDC88C-205ENST00000553403 TATDN2Q93075 761 aa28.38■■■□□ 2.13
CCDC88C-205ENST00000553403 C1orf112Q9NSG2 853 aa28.38■■■□□ 2.13
CCDC88C-205ENST00000553403 NOCTQ9UK39 431 aaKnown RBP28.38■■■□□ 2.13
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms