RNA–Protein interactions for RNA: ENST00000552828.5

CKAP4-202, Transcript of cytoskeleton associated protein 4, humanhuman

TSL 3

Gene CKAP4, Length 831 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-202ENST00000552828 GBP2P32456 591 aaPredicted RBP13.13□□□□□ -0.31
CKAP4-202ENST00000552828 KRT2P35908 639 aa13.13□□□□□ -0.31
CKAP4-202ENST00000552828 RARRES1P49788 294 aa13.13□□□□□ -0.31
CKAP4-202ENST00000552828 CREMQ03060 361 aa13.13□□□□□ -0.31
CKAP4-202ENST00000552828 GRIK3Q13003 919 aa13.13□□□□□ -0.31
CKAP4-202ENST00000552828 TRIM29Q14134 588 aa13.13□□□□□ -0.31
CKAP4-202ENST00000552828 PPP4R3CPQ6ZMV5 832 aa13.13□□□□□ -0.31
CKAP4-202ENST00000552828 SPATA31D4Q6ZUB0 917 aa13.13□□□□□ -0.31
CKAP4-202ENST00000552828 PALB2Q86YC2 1186 aa13.13□□□□□ -0.31
CKAP4-202ENST00000552828 B3GALT6Q96L58 329 aa13.13□□□□□ -0.31
CKAP4-202ENST00000552828 MTMR9Q96QG7 549 aa13.13□□□□□ -0.31
CKAP4-202ENST00000552828 TRIM6Q9C030 488 aaPredicted RBP13.13□□□□□ -0.31
CKAP4-202ENST00000552828 TTC12Q9H892 705 aaPredicted RBP13.13□□□□□ -0.31
CKAP4-202ENST00000552828 FRYLO94915 3013 aa13.13□□□□□ -0.31
CKAP4-202ENST00000552828 CACNA1AO00555 2505 aa13.13□□□□□ -0.31
CKAP4-202ENST00000552828 CALCRLQ16602 461 aa13.12□□□□□ -0.31
CKAP4-202ENST00000552828 FAM187BQ17R55 369 aa13.12□□□□□ -0.31
CKAP4-202ENST00000552828 CDCA2Q69YH5 1023 aaPredicted RBP13.12□□□□□ -0.31
CKAP4-202ENST00000552828 PHLDB3Q6NSJ2 640 aa13.12□□□□□ -0.31
CKAP4-202ENST00000552828 FAM184AQ8NB25 1140 aa13.12□□□□□ -0.31
CKAP4-202ENST00000552828 RIN2Q8WYP3 895 aaPredicted RBP13.12□□□□□ -0.31
CKAP4-202ENST00000552828 PRIMPOLQ96LW4 560 aa13.12□□□□□ -0.31
CKAP4-202ENST00000552828 APOL6Q9BWW8 343 aa13.12□□□□□ -0.31
CKAP4-202ENST00000552828 POLR3FQ9H1D9 316 aaPredicted RBP13.12□□□□□ -0.31
CKAP4-202ENST00000552828 FZD8Q9H461 694 aa13.12□□□□□ -0.31
CKAP4-202ENST00000552828 BRMS1Q9HCU9 246 aa13.12□□□□□ -0.31
CKAP4-202ENST00000552828 SLC2A4RGQ9NR83 387 aa13.12□□□□□ -0.31
CKAP4-202ENST00000552828 ZFP37Q9Y6Q3 630 aaPredicted RBP13.12□□□□□ -0.31
CKAP4-202ENST00000552828 C2orf16Q68DN1 1984 aa13.11□□□□□ -0.31
CKAP4-202ENST00000552828 TADA2AO75478 443 aa13.11□□□□□ -0.31
CKAP4-202ENST00000552828 ZMYND10O75800 440 aa13.11□□□□□ -0.31
CKAP4-202ENST00000552828 NPTXRO95502 500 aa13.11□□□□□ -0.31
CKAP4-202ENST00000552828 CFHP08603 1231 aa13.11□□□□□ -0.31
CKAP4-202ENST00000552828 SPATA31C1P0DKV0 1188 aa13.11□□□□□ -0.31
CKAP4-202ENST00000552828 HTR4Q13639 388 aa13.11□□□□□ -0.31
CKAP4-202ENST00000552828 HSP90AA2PQ14568 343 aaPredicted RBP13.11□□□□□ -0.31
CKAP4-202ENST00000552828 ADSSL1Q8N142 457 aa13.11□□□□□ -0.31
CKAP4-202ENST00000552828 PIGOQ8TEQ8 1089 aa13.11□□□□□ -0.31
CKAP4-202ENST00000552828 SEMA4AQ9H3S1 761 aa13.11□□□□□ -0.31
CKAP4-202ENST00000552828 PIDD1Q9HB75 910 aa13.11□□□□□ -0.31
CKAP4-202ENST00000552828 DAXXQ9UER7 740 aaPredicted RBP13.11□□□□□ -0.31
CKAP4-202ENST00000552828 SF3B1O75533 1304 aaKnown RBP eCLIP13.11□□□□□ -0.31
CKAP4-202ENST00000552828 EP300Q09472 2414 aaPredicted RBP13.1□□□□□ -0.31
CKAP4-202ENST00000552828 DNAH14Q0VDD8 3507 aa13.1□□□□□ -0.31
CKAP4-202ENST00000552828 BTBD18B2RXH4 712 aa13.1□□□□□ -0.31
CKAP4-202ENST00000552828 WNT7AO00755 349 aa13.1□□□□□ -0.31
CKAP4-202ENST00000552828 NEMFO60524 1076 aa13.1□□□□□ -0.31
CKAP4-202ENST00000552828 MYBP10242 640 aa13.1□□□□□ -0.31
CKAP4-202ENST00000552828 RPL17P18621 184 aaKnown RBP13.1□□□□□ -0.31
CKAP4-202ENST00000552828 TXKP42681 527 aa13.1□□□□□ -0.31
CKAP4-202ENST00000552828 TUSC3Q13454 348 aa13.1□□□□□ -0.31
CKAP4-202ENST00000552828 SAFBQ15424 915 aaKnown RBP eCLIP13.1□□□□□ -0.31
CKAP4-202ENST00000552828 NAB2Q15742 525 aa13.1□□□□□ -0.31
CKAP4-202ENST00000552828 RTP2Q5QGT7 225 aa13.1□□□□□ -0.31
CKAP4-202ENST00000552828 CDR2LQ86X02 465 aaPredicted RBP13.1□□□□□ -0.31
CKAP4-202ENST00000552828 MCPH1Q8NEM0 835 aa13.1□□□□□ -0.31
CKAP4-202ENST00000552828 PIK3R5Q8WYR1 880 aa13.1□□□□□ -0.31
CKAP4-202ENST00000552828 C8orf76Q96K31 380 aa13.1□□□□□ -0.31
CKAP4-202ENST00000552828 CLSTN3Q9BQT9 956 aa13.1□□□□□ -0.31
CKAP4-202ENST00000552828 PAAF1Q9BRP4 392 aa13.1□□□□□ -0.31
CKAP4-202ENST00000552828 TTPALQ9BTX7 342 aa13.1□□□□□ -0.31
CKAP4-202ENST00000552828 TBC1D17Q9HA65 648 aa13.1□□□□□ -0.31
CKAP4-202ENST00000552828 PRMT7Q9NVM4 692 aaPredicted RBP13.1□□□□□ -0.31
CKAP4-202ENST00000552828 KLK14Q9P0G3 267 aa13.1□□□□□ -0.31
CKAP4-202ENST00000552828 DLGAP2Q9P1A6 1054 aa13.1□□□□□ -0.31
CKAP4-202ENST00000552828 PARP2Q9UGN5 583 aa13.1□□□□□ -0.31
CKAP4-202ENST00000552828 FBXW11Q9UKB1 542 aa13.1□□□□□ -0.31
CKAP4-202ENST00000552828 KIF3AQ9Y496 699 aa13.1□□□□□ -0.31
CKAP4-202ENST00000552828 RBM19Q9Y4C8 960 aaKnown RBP13.1□□□□□ -0.31
CKAP4-202ENST00000552828 PTGESO14684 152 aa13.09□□□□□ -0.31
CKAP4-202ENST00000552828 POU2F2P09086 479 aa13.09□□□□□ -0.31
CKAP4-202ENST00000552828 HNRNPA1P09651 372 aaKnown RBP eCLIP13.09□□□□□ -0.31
CKAP4-202ENST00000552828 FOSBP53539 338 aa13.09□□□□□ -0.31
CKAP4-202ENST00000552828 PRSS55Q6UWB4 352 aaPredicted RBP13.09□□□□□ -0.31
CKAP4-202ENST00000552828 ERMP1Q7Z2K6 904 aa13.09□□□□□ -0.31
CKAP4-202ENST00000552828 CATSPER3Q86XQ3 398 aa13.09□□□□□ -0.31
CKAP4-202ENST00000552828 LNX1Q8TBB1 728 aaPredicted RBP13.09□□□□□ -0.31
CKAP4-202ENST00000552828 GPR152Q8TDT2 470 aa13.09□□□□□ -0.31
CKAP4-202ENST00000552828 RABGGTAQ92696 567 aa13.09□□□□□ -0.31
CKAP4-202ENST00000552828 CCDC43Q96MW1 224 aaKnown RBP13.09□□□□□ -0.31
CKAP4-202ENST00000552828 PDZD7Q9H5P4 517 aa13.09□□□□□ -0.31
CKAP4-202ENST00000552828 TUFT1Q9NNX1 390 aa13.09□□□□□ -0.31
CKAP4-202ENST00000552828 GPRC5CQ9NQ84 441 aa13.09□□□□□ -0.31
CKAP4-202ENST00000552828 ARHGEF3Q9NR81 526 aa13.09□□□□□ -0.31
CKAP4-202ENST00000552828 CA14Q9ULX7 337 aa13.09□□□□□ -0.31
CKAP4-202ENST00000552828 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.09□□□□□ -0.31
CKAP4-202ENST00000552828 NUMBLQ9Y6R0 609 aa13.09□□□□□ -0.31
CKAP4-202ENST00000552828 ARID2Q68CP9 1835 aa13.09□□□□□ -0.31
CKAP4-202ENST00000552828 DMXL1Q9Y485 3027 aa13.08□□□□□ -0.32
CKAP4-202ENST00000552828 A0A087WWV3 80 aa13.08□□□□□ -0.32
CKAP4-202ENST00000552828 LRRIQ4A6NIV6 560 aa13.08□□□□□ -0.32
CKAP4-202ENST00000552828 TTLL13PA6NNM8 815 aa13.08□□□□□ -0.32
CKAP4-202ENST00000552828 STK25O00506 426 aa13.08□□□□□ -0.32
CKAP4-202ENST00000552828 USO1O60763 962 aaKnown RBP13.08□□□□□ -0.32
CKAP4-202ENST00000552828 KIF4AO95239 1232 aa13.08□□□□□ -0.32
CKAP4-202ENST00000552828 THP07101 528 aa13.08□□□□□ -0.32
CKAP4-202ENST00000552828 FSHRP23945 695 aa13.08□□□□□ -0.32
CKAP4-202ENST00000552828 HOXA9P31269 272 aa13.08□□□□□ -0.32
CKAP4-202ENST00000552828 STARD6P59095 220 aa13.08□□□□□ -0.32
CKAP4-202ENST00000552828 FAM171A1Q5VUB5 890 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms