RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 COL11A2P13942 1736 aaPredicted RBP6.01□□□□□ -1.45
LIMA1-215ENST00000552823 GOLGA6L10A6NI86 522 aa6.01□□□□□ -1.45
LIMA1-215ENST00000552823 USP2O75604 605 aaPredicted RBP6.01□□□□□ -1.45
LIMA1-215ENST00000552823 MAP3K6O95382 1288 aa6.01□□□□□ -1.45
LIMA1-215ENST00000552823 IFNB1P01574 187 aa6.01□□□□□ -1.45
LIMA1-215ENST00000552823 PYGMP11217 842 aa6.01□□□□□ -1.45
LIMA1-215ENST00000552823 ATF7P17544 494 aaPredicted RBP6.01□□□□□ -1.45
LIMA1-215ENST00000552823 RRM1P23921 792 aa6.01□□□□□ -1.45
LIMA1-215ENST00000552823 MCM3P25205 808 aa6.01□□□□□ -1.45
LIMA1-215ENST00000552823 MAPK4P31152 587 aa6.01□□□□□ -1.45
LIMA1-215ENST00000552823 TCF7P36402 384 aaPredicted RBP6.01□□□□□ -1.45
LIMA1-215ENST00000552823 STAT5BP51692 787 aa6.01□□□□□ -1.45
LIMA1-215ENST00000552823 JAK3P52333 1124 aa6.01□□□□□ -1.45
LIMA1-215ENST00000552823 IRX5P78411 483 aaPredicted RBP6.01□□□□□ -1.45
LIMA1-215ENST00000552823 RNF187Q5TA31 235 aaPredicted RBP6.01□□□□□ -1.45
LIMA1-215ENST00000552823 DPY19L2P1Q6NXN4 242 aa6.01□□□□□ -1.45
LIMA1-215ENST00000552823 MIS18BP1Q6P0N0 1132 aa6.01□□□□□ -1.45
LIMA1-215ENST00000552823 WDR93Q6P2C0 686 aa6.01□□□□□ -1.45
LIMA1-215ENST00000552823 CCDC33Q8N5R6 958 aa6.01□□□□□ -1.45
LIMA1-215ENST00000552823 FBXL13Q8NEE6 735 aa6.01□□□□□ -1.45
LIMA1-215ENST00000552823 BCAS4Q8TDM0 211 aa6.01□□□□□ -1.45
LIMA1-215ENST00000552823 PRPF31Q8WWY3 499 aaKnown RBP6.01□□□□□ -1.45
LIMA1-215ENST00000552823 RFFLQ8WZ73 363 aa6.01□□□□□ -1.45
LIMA1-215ENST00000552823 RPGRIP1Q96KN7 1286 aa6.01□□□□□ -1.45
LIMA1-215ENST00000552823 BUD13Q9BRD0 619 aaKnown RBP eCLIP6.01□□□□□ -1.45
LIMA1-215ENST00000552823 FAM49AQ9H0Q0 323 aaPredicted RBP6.01□□□□□ -1.45
LIMA1-215ENST00000552823 AZI2Q9H6S1 392 aa6.01□□□□□ -1.45
LIMA1-215ENST00000552823 C1orf112Q9NSG2 853 aa6.01□□□□□ -1.45
LIMA1-215ENST00000552823 HOXC10Q9NYD6 342 aa6.01□□□□□ -1.45
LIMA1-215ENST00000552823 RBAKQ9NYW8 714 aaPredicted RBP6.01□□□□□ -1.45
LIMA1-215ENST00000552823 SEL1LQ9UBV2 794 aa6.01□□□□□ -1.45
LIMA1-215ENST00000552823 ASIC3Q9UHC3 531 aa6.01□□□□□ -1.45
LIMA1-215ENST00000552823 PGAP2Q9UHJ9 254 aa6.01□□□□□ -1.45
LIMA1-215ENST00000552823 TTC7AQ9ULT0 858 aaPredicted RBP6.01□□□□□ -1.45
LIMA1-215ENST00000552823 NOVA2Q9UNW9 492 aaKnown RBP6.01□□□□□ -1.45
LIMA1-215ENST00000552823 B4GALT5O43286 388 aa6□□□□□ -1.45
LIMA1-215ENST00000552823 CCDC172P0C7W6 258 aa6□□□□□ -1.45
LIMA1-215ENST00000552823 CYP11B1P15538 503 aa6□□□□□ -1.45
LIMA1-215ENST00000552823 KCNA2P16389 499 aa6□□□□□ -1.45
LIMA1-215ENST00000552823 IFNAR2P48551 515 aa6□□□□□ -1.45
LIMA1-215ENST00000552823 EPHB4P54760 987 aa6□□□□□ -1.45
LIMA1-215ENST00000552823 MFAP3P55082 362 aa6□□□□□ -1.45
LIMA1-215ENST00000552823 CDH8P55286 799 aa6□□□□□ -1.45
LIMA1-215ENST00000552823 MARSP56192 900 aaKnown RBP6□□□□□ -1.45
LIMA1-215ENST00000552823 TGFB2P61812 414 aa6□□□□□ -1.45
LIMA1-215ENST00000552823 GPC5P78333 572 aa6□□□□□ -1.45
LIMA1-215ENST00000552823 BMT2Q1RMZ1 405 aa6□□□□□ -1.45
LIMA1-215ENST00000552823 SUPT20HL1Q3ZLR7 823 aa6□□□□□ -1.45
LIMA1-215ENST00000552823 CYP4A22Q5TCH4 519 aa6□□□□□ -1.45
LIMA1-215ENST00000552823 MAP1SQ66K74 1059 aaPredicted RBP6□□□□□ -1.45
LIMA1-215ENST00000552823 CATSPERGQ6ZRH7 1159 aa6□□□□□ -1.45
LIMA1-215ENST00000552823 C4orf19Q8IY42 314 aa6□□□□□ -1.45
LIMA1-215ENST00000552823 GPD1LQ8N335 351 aa6□□□□□ -1.45
LIMA1-215ENST00000552823 GOLGA5Q8TBA6 731 aa6□□□□□ -1.45
LIMA1-215ENST00000552823 HNRNPLLQ8WVV9 542 aaKnown RBP6□□□□□ -1.45
LIMA1-215ENST00000552823 ZNF516Q92618 1163 aa6□□□□□ -1.45
LIMA1-215ENST00000552823 IQCDQ96DY2 449 aa6□□□□□ -1.45
LIMA1-215ENST00000552823 FHDC1Q9C0D6 1143 aaPredicted RBP6□□□□□ -1.45
LIMA1-215ENST00000552823 GPR88Q9GZN0 384 aa6□□□□□ -1.45
LIMA1-215ENST00000552823 TXNRD2Q9NNW7 524 aa6□□□□□ -1.45
LIMA1-215ENST00000552823 DMAC2Q9NW81 257 aa6□□□□□ -1.45
LIMA1-215ENST00000552823 FAM53CQ9NYF3 392 aa6□□□□□ -1.45
LIMA1-215ENST00000552823 GPRC5DQ9NZD1 345 aa6□□□□□ -1.45
LIMA1-215ENST00000552823 TBK1Q9UHD2 729 aa6□□□□□ -1.45
LIMA1-215ENST00000552823 PTPRJQ12913 1337 aa6□□□□□ -1.45
LIMA1-215ENST00000552823 GSTTP1A0A1W2PQM5 241 aa6□□□□□ -1.45
LIMA1-215ENST00000552823 DCDC2CA8MYV0 355 aa6□□□□□ -1.45
LIMA1-215ENST00000552823 ATP8B1O43520 1251 aa6□□□□□ -1.45
LIMA1-215ENST00000552823 ARIH2O95376 493 aa6□□□□□ -1.45
LIMA1-215ENST00000552823 LCA5LO95447 670 aa6□□□□□ -1.45
LIMA1-215ENST00000552823 ACSL3O95573 720 aa6□□□□□ -1.45
LIMA1-215ENST00000552823 CST3P01034 146 aaPredicted RBP6□□□□□ -1.45
LIMA1-215ENST00000552823 EDN1P05305 212 aa6□□□□□ -1.45
LIMA1-215ENST00000552823 POTEJP0CG39 1038 aa6□□□□□ -1.45
LIMA1-215ENST00000552823 KRT10P13645 584 aa6□□□□□ -1.45
LIMA1-215ENST00000552823 CHRNB2P17787 502 aa6□□□□□ -1.45
LIMA1-215ENST00000552823 ATP4AP20648 1035 aa6□□□□□ -1.45
LIMA1-215ENST00000552823 SCP2P22307 547 aa6□□□□□ -1.45
LIMA1-215ENST00000552823 UBA1P22314 1058 aaKnown RBP6□□□□□ -1.45
LIMA1-215ENST00000552823 GLRA2P23416 452 aa6□□□□□ -1.45
LIMA1-215ENST00000552823 ACTN2P35609 894 aa6□□□□□ -1.45
LIMA1-215ENST00000552823 ZNF131P52739 623 aa6□□□□□ -1.45
LIMA1-215ENST00000552823 JAM2P57087 298 aa6□□□□□ -1.45
LIMA1-215ENST00000552823 TTMPQ5BVD1 217 aa6□□□□□ -1.45
LIMA1-215ENST00000552823 SEL1L2Q5TEA6 688 aa6□□□□□ -1.45
LIMA1-215ENST00000552823 MMS22LQ6ZRQ5 1243 aa6□□□□□ -1.45
LIMA1-215ENST00000552823 SESTD1Q86VW0 696 aa6□□□□□ -1.45
LIMA1-215ENST00000552823 EPS8L1Q8TE68 723 aa6□□□□□ -1.45
LIMA1-215ENST00000552823 AENQ8WTP8 325 aaKnown RBP6□□□□□ -1.45
LIMA1-215ENST00000552823 SYN2Q92777 582 aaPredicted RBP6□□□□□ -1.45
LIMA1-215ENST00000552823 MTMR12Q9C0I1 747 aa6□□□□□ -1.45
LIMA1-215ENST00000552823 UTP11Q9Y3A2 253 aaKnown RBP6□□□□□ -1.45
LIMA1-215ENST00000552823 DAAM1Q9Y4D1 1078 aa6□□□□□ -1.45
LIMA1-215ENST00000552823 PCDHGC5Q9Y5F6 944 aa6□□□□□ -1.45
LIMA1-215ENST00000552823 STK24Q9Y6E0 443 aa6□□□□□ -1.45
LIMA1-215ENST00000552823 DLEC1Q9Y238 1755 aa6□□□□□ -1.45
LIMA1-215ENST00000552823 MAST2Q6P0Q8 1798 aa6□□□□□ -1.45
LIMA1-215ENST00000552823 ANKRD62A6NC57 917 aa6□□□□□ -1.45
LIMA1-215ENST00000552823 F5H423 210 aaPredicted RBP6□□□□□ -1.45
LIMA1-215ENST00000552823 GRAP2O75791 330 aa6□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms