RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 ERO1AQ96HE7 468 aa4.61□□□□□ -1.67
LIMA1-208ENST00000551691 ZNF496Q96IT1 587 aaPredicted RBP4.61□□□□□ -1.67
LIMA1-208ENST00000551691 CDX2Q99626 313 aaPredicted RBP4.61□□□□□ -1.67
LIMA1-208ENST00000551691 PTPN18Q99952 460 aa4.61□□□□□ -1.67
LIMA1-208ENST00000551691 BOCQ9BWV1 1114 aa4.61□□□□□ -1.67
LIMA1-208ENST00000551691 SLC13A1Q9BZW2 595 aa4.61□□□□□ -1.67
LIMA1-208ENST00000551691 ZNF700Q9H0M5 742 aa4.61□□□□□ -1.67
LIMA1-208ENST00000551691 IPPKQ9H8X2 491 aa4.61□□□□□ -1.67
LIMA1-208ENST00000551691 DBNDD1Q9H9R9 158 aa4.61□□□□□ -1.67
LIMA1-208ENST00000551691 TOMM22Q9NS69 142 aa4.61□□□□□ -1.67
LIMA1-208ENST00000551691 OXSMQ9NWU1 459 aa4.61□□□□□ -1.67
LIMA1-208ENST00000551691 FAM50BQ9Y247 325 aa4.61□□□□□ -1.67
LIMA1-208ENST00000551691 FRMPD2Q68DX3 1309 aaPredicted RBP4.61□□□□□ -1.67
LIMA1-208ENST00000551691 SLC12A8A0AV02 714 aa4.6□□□□□ -1.67
LIMA1-208ENST00000551691 KLHL33A6NCF5 533 aa4.6□□□□□ -1.67
LIMA1-208ENST00000551691 RNMTO43148 476 aaKnown RBP4.6□□□□□ -1.67
LIMA1-208ENST00000551691 PRPF3O43395 683 aaKnown RBP4.6□□□□□ -1.67
LIMA1-208ENST00000551691 SASH1O94885 1247 aa4.6□□□□□ -1.67
LIMA1-208ENST00000551691 BMP8BP34820 402 aa4.6□□□□□ -1.67
LIMA1-208ENST00000551691 IL6STP40189 918 aaPredicted RBP4.6□□□□□ -1.67
LIMA1-208ENST00000551691 KIR2DL1P43626 348 aaPredicted RBP4.6□□□□□ -1.67
LIMA1-208ENST00000551691 KIR2DL2P43627 348 aaPredicted RBP4.6□□□□□ -1.67
LIMA1-208ENST00000551691 SPIRE1Q08AE8 756 aa4.6□□□□□ -1.67
LIMA1-208ENST00000551691 SREBF2Q12772 1141 aa4.6□□□□□ -1.67
LIMA1-208ENST00000551691 GTF2H3Q13889 308 aa4.6□□□□□ -1.67
LIMA1-208ENST00000551691 RAB3GAP1Q15042 981 aa4.6□□□□□ -1.67
LIMA1-208ENST00000551691 LRIT3Q3SXY7 679 aa4.6□□□□□ -1.67
LIMA1-208ENST00000551691 CRY2Q49AN0 593 aa4.6□□□□□ -1.67
LIMA1-208ENST00000551691 HSF5Q4G112 596 aaPredicted RBP4.6□□□□□ -1.67
LIMA1-208ENST00000551691 COBLL1Q53SF7 1204 aa4.6□□□□□ -1.67
LIMA1-208ENST00000551691 IFIT1BQ5T764 474 aaKnown RBP4.6□□□□□ -1.67
LIMA1-208ENST00000551691 BROXQ5VW32 411 aa4.6□□□□□ -1.67
LIMA1-208ENST00000551691 DENND5AQ6IQ26 1287 aa4.6□□□□□ -1.67
LIMA1-208ENST00000551691 TMEM151BQ8IW70 566 aa4.6□□□□□ -1.67
LIMA1-208ENST00000551691 MIER2Q8N344 545 aa4.6□□□□□ -1.67
LIMA1-208ENST00000551691 CPA6Q8N4T0 437 aa4.6□□□□□ -1.67
LIMA1-208ENST00000551691 PAF1Q8N7H5 531 aa4.6□□□□□ -1.67
LIMA1-208ENST00000551691 CLRN3Q8NCR9 226 aa4.6□□□□□ -1.67
LIMA1-208ENST00000551691 MAFAQ8NHW3 353 aaPredicted RBP4.6□□□□□ -1.67
LIMA1-208ENST00000551691 USP33Q8TEY7 942 aa4.6□□□□□ -1.67
LIMA1-208ENST00000551691 DPF2Q92785 391 aa4.6□□□□□ -1.67
LIMA1-208ENST00000551691 RPGRQ92834 1020 aaKnown RBP4.6□□□□□ -1.67
LIMA1-208ENST00000551691 TIFAQ96CG3 184 aa4.6□□□□□ -1.67
LIMA1-208ENST00000551691 FAXDC2Q96IV6 333 aa4.6□□□□□ -1.67
LIMA1-208ENST00000551691 TNIP3Q96KP6 325 aa4.6□□□□□ -1.67
LIMA1-208ENST00000551691 FCRL3Q96P31 734 aaPredicted RBP4.6□□□□□ -1.67
LIMA1-208ENST00000551691 NAP1L4Q99733 375 aaKnown RBP4.6□□□□□ -1.67
LIMA1-208ENST00000551691 MAN1C1Q9NR34 630 aa4.6□□□□□ -1.67
LIMA1-208ENST00000551691 CLDND1Q9NY35 253 aa4.6□□□□□ -1.67
LIMA1-208ENST00000551691 RTEL1Q9NZ71 1219 aa4.6□□□□□ -1.67
LIMA1-208ENST00000551691 KLHL14Q9P2G3 628 aa4.6□□□□□ -1.67
LIMA1-208ENST00000551691 KCNG1Q9UIX4 513 aa4.6□□□□□ -1.67
LIMA1-208ENST00000551691 COA3Q9Y2R0 106 aaPredicted RBP4.6□□□□□ -1.67
LIMA1-208ENST00000551691 TIMM13Q9Y5L4 95 aaPredicted RBP4.6□□□□□ -1.67
LIMA1-208ENST00000551691 USP16Q9Y5T5 823 aa4.6□□□□□ -1.67
LIMA1-208ENST00000551691 NPFFR2Q9Y5X5 522 aa4.6□□□□□ -1.67
LIMA1-208ENST00000551691 ROCK2O75116 1388 aaKnown RBP4.6□□□□□ -1.67
LIMA1-208ENST00000551691 RAB3GAP2Q9H2M9 1393 aa4.6□□□□□ -1.67
LIMA1-208ENST00000551691 BDP1A6H8Y1 2624 aa4.59□□□□□ -1.67
LIMA1-208ENST00000551691 K7ESF4 209 aa4.59□□□□□ -1.67
LIMA1-208ENST00000551691 NPHS1O60500 1241 aa4.59□□□□□ -1.67
LIMA1-208ENST00000551691 MSCO60682 206 aa4.59□□□□□ -1.67
LIMA1-208ENST00000551691 LTFP02788 710 aa4.59□□□□□ -1.67
LIMA1-208ENST00000551691 LCP1P13796 627 aa4.59□□□□□ -1.67
LIMA1-208ENST00000551691 VAV1P15498 845 aa4.59□□□□□ -1.67
LIMA1-208ENST00000551691 PNLIPP16233 465 aa4.59□□□□□ -1.67
LIMA1-208ENST00000551691 PRKCAP17252 672 aa4.59□□□□□ -1.67
LIMA1-208ENST00000551691 MRC1P22897 1456 aa4.59□□□□□ -1.67
LIMA1-208ENST00000551691 CTSKP43235 329 aa4.59□□□□□ -1.67
LIMA1-208ENST00000551691 MAGEA10P43363 369 aaPredicted RBP4.59□□□□□ -1.67
LIMA1-208ENST00000551691 IRF9Q00978 393 aa4.59□□□□□ -1.67
LIMA1-208ENST00000551691 ADCY1Q08828 1119 aa4.59□□□□□ -1.67
LIMA1-208ENST00000551691 KIAA2012Q0VF49 1180 aa4.59□□□□□ -1.67
LIMA1-208ENST00000551691 LSAMPQ13449 338 aa4.59□□□□□ -1.67
LIMA1-208ENST00000551691 DHX8Q14562 1220 aaKnown RBP4.59□□□□□ -1.67
LIMA1-208ENST00000551691 RALBP1Q15311 655 aa4.59□□□□□ -1.67
LIMA1-208ENST00000551691 PCBP2Q15366 365 aaKnown RBP eCLIP4.59□□□□□ -1.67
LIMA1-208ENST00000551691 SAFBQ15424 915 aaKnown RBP eCLIP4.59□□□□□ -1.67
LIMA1-208ENST00000551691 GRAMD1BQ3KR37 738 aa4.59□□□□□ -1.67
LIMA1-208ENST00000551691 AMOTQ4VCS5 1084 aa4.59□□□□□ -1.67
LIMA1-208ENST00000551691 C4orf46Q504U0 113 aa4.59□□□□□ -1.67
LIMA1-208ENST00000551691 TMEM240Q5SV17 173 aa4.59□□□□□ -1.67
LIMA1-208ENST00000551691 C10orf62Q5T681 223 aaPredicted RBP4.59□□□□□ -1.67
LIMA1-208ENST00000551691 CNKSR3Q6P9H4 555 aa4.59□□□□□ -1.67
LIMA1-208ENST00000551691 DPP8Q6V1X1 898 aaPredicted RBP4.59□□□□□ -1.67
LIMA1-208ENST00000551691 CYP2R1Q6VVX0 501 aa4.59□□□□□ -1.67
LIMA1-208ENST00000551691 C16orf59Q7L2K0 433 aa4.59□□□□□ -1.67
LIMA1-208ENST00000551691 PRRT2Q7Z6L0 340 aaPredicted RBP4.59□□□□□ -1.67
LIMA1-208ENST00000551691 IGDCC3Q8IVU1 814 aa4.59□□□□□ -1.67
LIMA1-208ENST00000551691 NGEFQ8N5V2 710 aa4.59□□□□□ -1.67
LIMA1-208ENST00000551691 USP38Q8NB14 1042 aa4.59□□□□□ -1.67
LIMA1-208ENST00000551691 RCBTB1Q8NDN9 531 aa4.59□□□□□ -1.67
LIMA1-208ENST00000551691 C1orf162Q8NEQ5 155 aaPredicted RBP4.59□□□□□ -1.67
LIMA1-208ENST00000551691 NUP43Q8NFH3 380 aa4.59□□□□□ -1.67
LIMA1-208ENST00000551691 SVIPQ8NHG7 77 aa4.59□□□□□ -1.67
LIMA1-208ENST00000551691 MZB1Q8WU39 189 aa4.59□□□□□ -1.67
LIMA1-208ENST00000551691 TMEM169Q96HH4 297 aa4.59□□□□□ -1.67
LIMA1-208ENST00000551691 RBM17Q96I25 401 aaKnown RBP4.59□□□□□ -1.67
LIMA1-208ENST00000551691 ABCC12Q96J65 1359 aa4.59□□□□□ -1.67
LIMA1-208ENST00000551691 CLMNQ96JQ2 1002 aa4.59□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms