RNA–Protein interactions for RNA: ENST00000550280.1

SMARCD1-208, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1, humanhuman

TSL 2

Gene SMARCD1, Length 567 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD1-208ENST00000550280 HASPINQ8TF76 798 aa12.85□□□□□ -0.35
SMARCD1-208ENST00000550280 CLSTN3Q9BQT9 956 aa12.85□□□□□ -0.35
SMARCD1-208ENST00000550280 COLEC11Q9BWP8 271 aa12.85□□□□□ -0.35
SMARCD1-208ENST00000550280 PLEKHA4Q9H4M7 779 aa12.85□□□□□ -0.35
SMARCD1-208ENST00000550280 ZDHHC7Q9NXF8 308 aa12.85□□□□□ -0.35
SMARCD1-208ENST00000550280 FBXW11Q9UKB1 542 aa12.85□□□□□ -0.35
SMARCD1-208ENST00000550280 SSX2IPQ9Y2D8 614 aa12.85□□□□□ -0.35
SMARCD1-208ENST00000550280 NUMBLQ9Y6R0 609 aa12.85□□□□□ -0.35
SMARCD1-208ENST00000550280 R4GN57 208 aa12.85□□□□□ -0.35
SMARCD1-208ENST00000550280 BTBD18B2RXH4 712 aa12.84□□□□□ -0.35
SMARCD1-208ENST00000550280 USO1O60763 962 aaKnown RBP12.84□□□□□ -0.35
SMARCD1-208ENST00000550280 CDKL5O76039 1030 aa12.84□□□□□ -0.35
SMARCD1-208ENST00000550280 KIF4AO95239 1232 aa12.84□□□□□ -0.35
SMARCD1-208ENST00000550280 C1RP00736 705 aa12.84□□□□□ -0.35
SMARCD1-208ENST00000550280 DCNP07585 359 aaKnown RBP12.84□□□□□ -0.35
SMARCD1-208ENST00000550280 TFDP1Q14186 410 aa12.84□□□□□ -0.35
SMARCD1-208ENST00000550280 ME3Q16798 604 aa12.84□□□□□ -0.35
SMARCD1-208ENST00000550280 CDCA2Q69YH5 1023 aaPredicted RBP12.84□□□□□ -0.35
SMARCD1-208ENST00000550280 PARM1Q6UWI2 310 aa12.84□□□□□ -0.35
SMARCD1-208ENST00000550280 PPP4R3CPQ6ZMV5 832 aa12.84□□□□□ -0.35
SMARCD1-208ENST00000550280 MAML2Q8IZL2 1156 aaPredicted RBP12.84□□□□□ -0.35
SMARCD1-208ENST00000550280 LNX1Q8TBB1 728 aaPredicted RBP12.84□□□□□ -0.35
SMARCD1-208ENST00000550280 STAMQ92783 540 aa12.84□□□□□ -0.35
SMARCD1-208ENST00000550280 FGF14Q92915 247 aa12.84□□□□□ -0.35
SMARCD1-208ENST00000550280 NAP1L4Q99733 375 aaKnown RBP12.84□□□□□ -0.35
SMARCD1-208ENST00000550280 FZD8Q9H461 694 aa12.84□□□□□ -0.35
SMARCD1-208ENST00000550280 PDZD7Q9H5P4 517 aa12.84□□□□□ -0.35
SMARCD1-208ENST00000550280 TTC12Q9H892 705 aaPredicted RBP12.84□□□□□ -0.35
SMARCD1-208ENST00000550280 PCDHA12Q9UN75 941 aa12.84□□□□□ -0.35
SMARCD1-208ENST00000550280 DOCK6Q96HP0 2047 aa12.84□□□□□ -0.35
SMARCD1-208ENST00000550280 TDRD15B5MCY1 1934 aaKnown RBP12.84□□□□□ -0.35
SMARCD1-208ENST00000550280 ZMYM2Q9UBW7 1377 aa12.83□□□□□ -0.36
SMARCD1-208ENST00000550280 CASTOR2A6NHX0 329 aa12.83□□□□□ -0.36
SMARCD1-208ENST00000550280 MARCH6O60337 910 aa12.83□□□□□ -0.36
SMARCD1-208ENST00000550280 JAK2O60674 1132 aa12.83□□□□□ -0.36
SMARCD1-208ENST00000550280 MED24O75448 989 aa12.83□□□□□ -0.36
SMARCD1-208ENST00000550280 BAG4O95429 457 aaKnown RBP12.83□□□□□ -0.36
SMARCD1-208ENST00000550280 KRT2P35908 639 aa12.83□□□□□ -0.36
SMARCD1-208ENST00000550280 TXKP42681 527 aa12.83□□□□□ -0.36
SMARCD1-208ENST00000550280 HSP90AA2PQ14568 343 aaPredicted RBP12.83□□□□□ -0.36
SMARCD1-208ENST00000550280 CALCRLQ16602 461 aa12.83□□□□□ -0.36
SMARCD1-208ENST00000550280 EEF1DP3Q658K8 133 aa12.83□□□□□ -0.36
SMARCD1-208ENST00000550280 PHLDB3Q6NSJ2 640 aa12.83□□□□□ -0.36
SMARCD1-208ENST00000550280 CD300LGQ6UXG3 332 aa12.83□□□□□ -0.36
SMARCD1-208ENST00000550280 RSPO2Q6UXX9 243 aaPredicted RBP12.83□□□□□ -0.36
SMARCD1-208ENST00000550280 MAEAQ7L5Y9 396 aa12.83□□□□□ -0.36
SMARCD1-208ENST00000550280 GRASPQ7Z6J2 395 aaPredicted RBP12.83□□□□□ -0.36
SMARCD1-208ENST00000550280 NSUN7Q8NE18 718 aaKnown RBP12.83□□□□□ -0.36
SMARCD1-208ENST00000550280 PIK3R5Q8WYR1 880 aa12.83□□□□□ -0.36
SMARCD1-208ENST00000550280 NXPE3Q969Y0 559 aa12.83□□□□□ -0.36
SMARCD1-208ENST00000550280 FOXQ1Q9C009 403 aa12.83□□□□□ -0.36
SMARCD1-208ENST00000550280 TRIM6Q9C030 488 aaPredicted RBP12.83□□□□□ -0.36
SMARCD1-208ENST00000550280 CCDC113Q9H0I3 377 aa12.83□□□□□ -0.36
SMARCD1-208ENST00000550280 ARHGEF3Q9NR81 526 aa12.83□□□□□ -0.36
SMARCD1-208ENST00000550280 SLC2A4RGQ9NR83 387 aa12.83□□□□□ -0.36
SMARCD1-208ENST00000550280 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP12.83□□□□□ -0.36
SMARCD1-208ENST00000550280 PARP2Q9UGN5 583 aa12.83□□□□□ -0.36
SMARCD1-208ENST00000550280 ZNF292O60281 2723 aa12.83□□□□□ -0.36
SMARCD1-208ENST00000550280 EP300Q09472 2414 aaPredicted RBP12.82□□□□□ -0.36
SMARCD1-208ENST00000550280 FRYLO94915 3013 aa12.82□□□□□ -0.36
SMARCD1-208ENST00000550280 WDR87Q6ZQQ6 2873 aa12.82□□□□□ -0.36
SMARCD1-208ENST00000550280 CACNA1AO00555 2505 aa12.82□□□□□ -0.36
SMARCD1-208ENST00000550280 LRRIQ4A6NIV6 560 aa12.82□□□□□ -0.36
SMARCD1-208ENST00000550280 XBP1P17861 261 aa12.82□□□□□ -0.36
SMARCD1-208ENST00000550280 FOSBP53539 338 aa12.82□□□□□ -0.36
SMARCD1-208ENST00000550280 GPC5P78333 572 aa12.82□□□□□ -0.36
SMARCD1-208ENST00000550280 TUSC3Q13454 348 aa12.82□□□□□ -0.36
SMARCD1-208ENST00000550280 FAM187BQ17R55 369 aa12.82□□□□□ -0.36
SMARCD1-208ENST00000550280 SPECC1Q5M775 1068 aa12.82□□□□□ -0.36
SMARCD1-208ENST00000550280 CATSPER3Q86XQ3 398 aa12.82□□□□□ -0.36
SMARCD1-208ENST00000550280 DIS3L2Q8IYB7 885 aaKnown RBP12.82□□□□□ -0.36
SMARCD1-208ENST00000550280 ITFG1Q8TB96 612 aa12.82□□□□□ -0.36
SMARCD1-208ENST00000550280 PIDD1Q9HB75 910 aa12.82□□□□□ -0.36
SMARCD1-208ENST00000550280 SNTG2Q9NY99 539 aa12.82□□□□□ -0.36
SMARCD1-208ENST00000550280 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP12.82□□□□□ -0.36
SMARCD1-208ENST00000550280 DPP7Q9UHL4 492 aa12.82□□□□□ -0.36
SMARCD1-208ENST00000550280 MTCL1Q9Y4B5 1905 aaKnown RBP12.82□□□□□ -0.36
SMARCD1-208ENST00000550280 GPR179Q6PRD1 2367 aa12.81□□□□□ -0.36
SMARCD1-208ENST00000550280 SHISA7A6NL88 538 aa12.81□□□□□ -0.36
SMARCD1-208ENST00000550280 NEMFO60524 1076 aa12.81□□□□□ -0.36
SMARCD1-208ENST00000550280 TADA2AO75478 443 aa12.81□□□□□ -0.36
SMARCD1-208ENST00000550280 RECQL4O94761 1208 aa12.81□□□□□ -0.36
SMARCD1-208ENST00000550280 SP9P0CG40 484 aa12.81□□□□□ -0.36
SMARCD1-208ENST00000550280 ID4P47928 161 aa12.81□□□□□ -0.36
SMARCD1-208ENST00000550280 STARD6P59095 220 aa12.81□□□□□ -0.36
SMARCD1-208ENST00000550280 FOXK2Q01167 660 aa12.81□□□□□ -0.36
SMARCD1-208ENST00000550280 PSMD5Q16401 504 aa12.81□□□□□ -0.36
SMARCD1-208ENST00000550280 FAM171A1Q5VUB5 890 aa12.81□□□□□ -0.36
SMARCD1-208ENST00000550280 NOSTRINQ8IVI9 506 aa12.81□□□□□ -0.36
SMARCD1-208ENST00000550280 GTF3C6Q969F1 213 aa12.81□□□□□ -0.36
SMARCD1-208ENST00000550280 RMDN1Q96DB5 314 aa12.81□□□□□ -0.36
SMARCD1-208ENST00000550280 TTPALQ9BTX7 342 aa12.81□□□□□ -0.36
SMARCD1-208ENST00000550280 POLD4Q9HCU8 107 aa12.81□□□□□ -0.36
SMARCD1-208ENST00000550280 HCFC1R1Q9NWW0 138 aa12.81□□□□□ -0.36
SMARCD1-208ENST00000550280 MTF2Q9Y483 593 aaPredicted RBP12.81□□□□□ -0.36
SMARCD1-208ENST00000550280 SF3B1O75533 1304 aaKnown RBP eCLIP12.81□□□□□ -0.36
SMARCD1-208ENST00000550280 VWA8A3KMH1 1905 aa12.8□□□□□ -0.36
SMARCD1-208ENST00000550280 NOTCH4Q99466 2003 aa12.8□□□□□ -0.36
SMARCD1-208ENST00000550280 STK25O00506 426 aa12.8□□□□□ -0.36
SMARCD1-208ENST00000550280 NRG2O14511 850 aaPredicted RBP12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms