RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 ERLIN2O94905 339 aa14.22□□□□□ -0.13
SCAF11-208ENST00000546534 TGM1P22735 817 aa14.22□□□□□ -0.13
SCAF11-208ENST00000546534 ARHGAP8P85298 464 aa14.22□□□□□ -0.13
SCAF11-208ENST00000546534 LMNB2Q03252 620 aa14.22□□□□□ -0.13
SCAF11-208ENST00000546534 NTRK3Q16288 839 aa14.22□□□□□ -0.13
SCAF11-208ENST00000546534 PRSS55Q6UWB4 352 aaPredicted RBP14.22□□□□□ -0.13
SCAF11-208ENST00000546534 RNF149Q8NC42 400 aa14.22□□□□□ -0.13
SCAF11-208ENST00000546534 NELL1Q92832 810 aa14.22□□□□□ -0.13
SCAF11-208ENST00000546534 FGF13Q92913 245 aa14.22□□□□□ -0.13
SCAF11-208ENST00000546534 SECISBP2LQ93073 1101 aaKnown RBP14.22□□□□□ -0.13
SCAF11-208ENST00000546534 CPB2Q96IY4 423 aa14.22□□□□□ -0.13
SCAF11-208ENST00000546534 CEP170P1Q96L14 293 aa14.22□□□□□ -0.13
SCAF11-208ENST00000546534 APOL6Q9BWW8 343 aa14.22□□□□□ -0.13
SCAF11-208ENST00000546534 EPC1Q9H2F5 836 aa14.22□□□□□ -0.13
SCAF11-208ENST00000546534 LTB4R2Q9NPC1 389 aa14.22□□□□□ -0.13
SCAF11-208ENST00000546534 ZSCAN32Q9NX65 697 aa14.22□□□□□ -0.13
SCAF11-208ENST00000546534 WRAP73Q9P2S5 460 aaPredicted RBP14.22□□□□□ -0.13
SCAF11-208ENST00000546534 ADAM28Q9UKQ2 775 aa14.22□□□□□ -0.13
SCAF11-208ENST00000546534 AXLP30530 894 aa14.21□□□□□ -0.13
SCAF11-208ENST00000546534 QARSP47897 775 aaKnown RBP14.21□□□□□ -0.13
SCAF11-208ENST00000546534 NLRP5P59047 1200 aa14.21□□□□□ -0.13
SCAF11-208ENST00000546534 CREMQ03060 361 aa14.21□□□□□ -0.13
SCAF11-208ENST00000546534 RTP2Q5QGT7 225 aa14.21□□□□□ -0.13
SCAF11-208ENST00000546534 ZBTB41Q5SVQ8 909 aa14.21□□□□□ -0.13
SCAF11-208ENST00000546534 TSSK4Q6SA08 328 aa14.21□□□□□ -0.13
SCAF11-208ENST00000546534 Q6ZUG5 572 aa14.21□□□□□ -0.13
SCAF11-208ENST00000546534 MTSS1LQ765P7 747 aa14.21□□□□□ -0.13
SCAF11-208ENST00000546534 FERMT3Q86UX7 667 aa14.21□□□□□ -0.13
SCAF11-208ENST00000546534 EXOC8Q8IYI6 725 aa14.21□□□□□ -0.13
SCAF11-208ENST00000546534 GSTCDQ8NEC7 633 aa14.21□□□□□ -0.13
SCAF11-208ENST00000546534 ITFG1Q8TB96 612 aa14.21□□□□□ -0.13
SCAF11-208ENST00000546534 BRF1Q92994 677 aa14.21□□□□□ -0.13
SCAF11-208ENST00000546534 KXD1Q9BQD3 176 aa14.21□□□□□ -0.13
SCAF11-208ENST00000546534 SLC26A6Q9BXS9 759 aa14.21□□□□□ -0.13
SCAF11-208ENST00000546534 RNF26Q9BY78 433 aaPredicted RBP14.21□□□□□ -0.13
SCAF11-208ENST00000546534 CSRNP2Q9H175 543 aa14.21□□□□□ -0.13
SCAF11-208ENST00000546534 FBXW11Q9UKB1 542 aa14.21□□□□□ -0.13
SCAF11-208ENST00000546534 USP18Q9UMW8 372 aa14.21□□□□□ -0.13
SCAF11-208ENST00000546534 NID2Q14112 1375 aa14.21□□□□□ -0.14
SCAF11-208ENST00000546534 ASAP2O43150 1006 aa14.2□□□□□ -0.14
SCAF11-208ENST00000546534 HMGB1P09429 215 aaKnown RBP14.2□□□□□ -0.14
SCAF11-208ENST00000546534 HNRNPA1P09651 372 aaKnown RBP eCLIP14.2□□□□□ -0.14
SCAF11-208ENST00000546534 RFC5P40937 340 aa14.2□□□□□ -0.14
SCAF11-208ENST00000546534 MAGEA9P43362 315 aa14.2□□□□□ -0.14
SCAF11-208ENST00000546534 PFKPQ01813 784 aa14.2□□□□□ -0.14
SCAF11-208ENST00000546534 KRT32Q14532 448 aa14.2□□□□□ -0.14
SCAF11-208ENST00000546534 NOTUMQ6P988 496 aa14.2□□□□□ -0.14
SCAF11-208ENST00000546534 RSPO2Q6UXX9 243 aaPredicted RBP14.2□□□□□ -0.14
SCAF11-208ENST00000546534 TCP11Q8WWU5 503 aa14.2□□□□□ -0.14
SCAF11-208ENST00000546534 CLDN23Q96B33 292 aa14.2□□□□□ -0.14
SCAF11-208ENST00000546534 CCDC51Q96ER9 411 aa14.2□□□□□ -0.14
SCAF11-208ENST00000546534 CLSTN3Q9BQT9 956 aa14.2□□□□□ -0.14
SCAF11-208ENST00000546534 RTKNQ9BST9 563 aa14.2□□□□□ -0.14
SCAF11-208ENST00000546534 C22orf23Q9BZE7 217 aa14.2□□□□□ -0.14
SCAF11-208ENST00000546534 NXF3Q9H4D5 531 aaKnown RBP14.2□□□□□ -0.14
SCAF11-208ENST00000546534 PARD6AQ9NPB6 346 aa14.2□□□□□ -0.14
SCAF11-208ENST00000546534 SH3GLB2Q9NR46 395 aa14.2□□□□□ -0.14
SCAF11-208ENST00000546534 CACNG4Q9UBN1 327 aa14.2□□□□□ -0.14
SCAF11-208ENST00000546534 DDX25Q9UHL0 483 aaKnown RBP14.2□□□□□ -0.14
SCAF11-208ENST00000546534 GIT1Q9Y2X7 761 aa14.2□□□□□ -0.14
SCAF11-208ENST00000546534 MIA3Q5JRA6 1907 aa14.19□□□□□ -0.14
SCAF11-208ENST00000546534 MYH15Q9Y2K3 1946 aa14.19□□□□□ -0.14
SCAF11-208ENST00000546534 MTCL1Q9Y4B5 1905 aaKnown RBP14.19□□□□□ -0.14
SCAF11-208ENST00000546534 CCL16O15467 120 aa14.19□□□□□ -0.14
SCAF11-208ENST00000546534 SLC37A4O43826 429 aa14.19□□□□□ -0.14
SCAF11-208ENST00000546534 TBC1D4O60343 1298 aa14.19□□□□□ -0.14
SCAF11-208ENST00000546534 TADA2AO75478 443 aa14.19□□□□□ -0.14
SCAF11-208ENST00000546534 P4HBP07237 508 aaKnown RBP14.19□□□□□ -0.14
SCAF11-208ENST00000546534 C8AP07357 584 aa14.19□□□□□ -0.14
SCAF11-208ENST00000546534 IFNAR1P17181 557 aa14.19□□□□□ -0.14
SCAF11-208ENST00000546534 AKAP5P24588 427 aa14.19□□□□□ -0.14
SCAF11-208ENST00000546534 TARSP26639 723 aaKnown RBP14.19□□□□□ -0.14
SCAF11-208ENST00000546534 PTENP60484 403 aa14.19□□□□□ -0.14
SCAF11-208ENST00000546534 PPP2R5CQ13362 524 aa14.19□□□□□ -0.14
SCAF11-208ENST00000546534 EMC2Q15006 297 aa14.19□□□□□ -0.14
SCAF11-208ENST00000546534 ST3GAL2Q16842 350 aa14.19□□□□□ -0.14
SCAF11-208ENST00000546534 PPM1LQ5SGD2 360 aa14.19□□□□□ -0.14
SCAF11-208ENST00000546534 MOXD1Q6UVY6 613 aa14.19□□□□□ -0.14
SCAF11-208ENST00000546534 TPRG1Q6ZUI0 275 aa14.19□□□□□ -0.14
SCAF11-208ENST00000546534 PAAF1Q9BRP4 392 aa14.19□□□□□ -0.14
SCAF11-208ENST00000546534 PHF20Q9BVI0 1012 aa14.19□□□□□ -0.14
SCAF11-208ENST00000546534 VAV3Q9UKW4 847 aa14.19□□□□□ -0.14
SCAF11-208ENST00000546534 PCDHA4Q9UN74 947 aa14.19□□□□□ -0.14
SCAF11-208ENST00000546534 POLIQ9UNA4 740 aa14.19□□□□□ -0.14
SCAF11-208ENST00000546534 PPME1Q9Y570 386 aa14.19□□□□□ -0.14
SCAF11-208ENST00000546534 PATJQ8NI35 1801 aa14.19□□□□□ -0.14
SCAF11-208ENST00000546534 INO80B-WBP1J3KQ70 363 aa14.18□□□□□ -0.14
SCAF11-208ENST00000546534 ZBTB39O15060 712 aa14.18□□□□□ -0.14
SCAF11-208ENST00000546534 DKC1O60832 514 aaKnown RBP eCLIP14.18□□□□□ -0.14
SCAF11-208ENST00000546534 XYLBO75191 536 aa14.18□□□□□ -0.14
SCAF11-208ENST00000546534 ADRB1P08588 477 aa14.18□□□□□ -0.14
SCAF11-208ENST00000546534 RPS9P46781 194 aaKnown RBP14.18□□□□□ -0.14
SCAF11-208ENST00000546534 NCBP1Q09161 790 aaKnown RBP14.18□□□□□ -0.14
SCAF11-208ENST00000546534 GRIK3Q13003 919 aa14.18□□□□□ -0.14
SCAF11-208ENST00000546534 FZD5Q13467 585 aa14.18□□□□□ -0.14
SCAF11-208ENST00000546534 PCBP1Q15365 356 aaKnown RBP eCLIP14.18□□□□□ -0.14
SCAF11-208ENST00000546534 AMHR2Q16671 573 aa14.18□□□□□ -0.14
SCAF11-208ENST00000546534 LIN9Q5TKA1 542 aa14.18□□□□□ -0.14
SCAF11-208ENST00000546534 NPAS3Q8IXF0 933 aa14.18□□□□□ -0.14
SCAF11-208ENST00000546534 HASPINQ8TF76 798 aa14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms