RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 PGBD4Q96DM1 585 aa17.42■□□□□ 0.38
PRPF40A-212ENST00000545856 BORCS6Q96GS4 357 aa17.42■□□□□ 0.38
PRPF40A-212ENST00000545856 WNT8AQ9H1J5 351 aa17.42■□□□□ 0.38
PRPF40A-212ENST00000545856 TSPYL2Q9H2G4 693 aaPredicted RBP17.42■□□□□ 0.38
PRPF40A-212ENST00000545856 GRPEL1Q9HAV7 217 aa17.42■□□□□ 0.38
PRPF40A-212ENST00000545856 TTC3P53804 2025 aa17.42■□□□□ 0.38
PRPF40A-212ENST00000545856 A0A0U1RQF3 1178 aa17.41■□□□□ 0.38
PRPF40A-212ENST00000545856 TTLL13PA6NNM8 815 aa17.41■□□□□ 0.38
PRPF40A-212ENST00000545856 P4HA2O15460 535 aa17.41■□□□□ 0.38
PRPF40A-212ENST00000545856 NBNO60934 754 aa17.41■□□□□ 0.38
PRPF40A-212ENST00000545856 CSDE1O75534 798 aaKnown RBP17.41■□□□□ 0.38
PRPF40A-212ENST00000545856 MTIF2P46199 727 aaKnown RBP17.41■□□□□ 0.38
PRPF40A-212ENST00000545856 YARSP54577 528 aaKnown RBP17.41■□□□□ 0.38
PRPF40A-212ENST00000545856 CLDN10P78369 228 aa17.41■□□□□ 0.38
PRPF40A-212ENST00000545856 CYP24A1Q07973 514 aa17.41■□□□□ 0.38
PRPF40A-212ENST00000545856 PSMD6Q15008 389 aa17.41■□□□□ 0.38
PRPF40A-212ENST00000545856 EEF1DP3Q658K8 133 aa17.41■□□□□ 0.38
PRPF40A-212ENST00000545856 MRPL10Q7Z7H8 261 aaKnown RBP17.41■□□□□ 0.38
PRPF40A-212ENST00000545856 CPB2Q96IY4 423 aa17.41■□□□□ 0.38
PRPF40A-212ENST00000545856 ZBTB45Q96K62 511 aaPredicted RBP17.41■□□□□ 0.38
PRPF40A-212ENST00000545856 ELAC1Q9H777 363 aaKnown RBP17.41■□□□□ 0.38
PRPF40A-212ENST00000545856 RGS18Q9NS28 235 aa17.41■□□□□ 0.38
PRPF40A-212ENST00000545856 FAM105AQ9NUU6 356 aa17.41■□□□□ 0.38
PRPF40A-212ENST00000545856 RBAKQ9NYW8 714 aaPredicted RBP17.41■□□□□ 0.38
PRPF40A-212ENST00000545856 DERAQ9Y315 318 aa17.41■□□□□ 0.38
PRPF40A-212ENST00000545856 UTP18Q9Y5J1 556 aaKnown RBP eCLIP17.41■□□□□ 0.38
PRPF40A-212ENST00000545856 TRIP11Q15643 1979 aa17.41■□□□□ 0.38
PRPF40A-212ENST00000545856 GTPBP10A4D1E9 387 aaKnown RBP17.4■□□□□ 0.38
PRPF40A-212ENST00000545856 TISP43B9A030 160 aa17.4■□□□□ 0.38
PRPF40A-212ENST00000545856 EOMESO95936 686 aa17.4■□□□□ 0.38
PRPF40A-212ENST00000545856 KRT31Q15323 416 aa17.4■□□□□ 0.38
PRPF40A-212ENST00000545856 UBXN11Q5T124 520 aa17.4■□□□□ 0.38
PRPF40A-212ENST00000545856 CNKSR3Q6P9H4 555 aa17.4■□□□□ 0.38
PRPF40A-212ENST00000545856 SLC24A5Q71RS6 500 aa17.4■□□□□ 0.38
PRPF40A-212ENST00000545856 ACAP3Q96P50 834 aa17.4■□□□□ 0.38
PRPF40A-212ENST00000545856 FAM213AQ9BRX8 229 aa17.4■□□□□ 0.38
PRPF40A-212ENST00000545856 TUBGCP2Q9BSJ2 902 aa17.4■□□□□ 0.38
PRPF40A-212ENST00000545856 HAPLN2Q9GZV7 340 aa17.4■□□□□ 0.38
PRPF40A-212ENST00000545856 PCIF1Q9H4Z3 704 aa17.4■□□□□ 0.38
PRPF40A-212ENST00000545856 RPF1Q9H9Y2 349 aaKnown RBP17.4■□□□□ 0.38
PRPF40A-212ENST00000545856 DAAM1Q9Y4D1 1078 aa17.4■□□□□ 0.38
PRPF40A-212ENST00000545856 BAIAP3O94812 1187 aa17.4■□□□□ 0.38
PRPF40A-212ENST00000545856 NPTXRO95502 500 aa17.4■□□□□ 0.38
PRPF40A-212ENST00000545856 SERPINC1P01008 464 aa17.4■□□□□ 0.38
PRPF40A-212ENST00000545856 STAG3L1P0CL83 205 aa17.4■□□□□ 0.38
PRPF40A-212ENST00000545856 FGFR4P22455 802 aa17.4■□□□□ 0.38
PRPF40A-212ENST00000545856 CASP4P49662 377 aa17.4■□□□□ 0.38
PRPF40A-212ENST00000545856 VAMP7P51809 220 aa17.4■□□□□ 0.38
PRPF40A-212ENST00000545856 CETN1Q12798 172 aa17.4■□□□□ 0.38
PRPF40A-212ENST00000545856 PPIGQ13427 754 aaKnown RBP eCLIP17.4■□□□□ 0.389e-10■■□□□ 11.4
PRPF40A-212ENST00000545856 CRELD2Q6UXH1 353 aaPredicted RBP17.4■□□□□ 0.38
PRPF40A-212ENST00000545856 CBWD2Q8IUF1 395 aa17.4■□□□□ 0.38
PRPF40A-212ENST00000545856 WDR49Q8IV35 697 aa17.4■□□□□ 0.38
PRPF40A-212ENST00000545856 TNS4Q8IZW8 715 aa17.4■□□□□ 0.38
PRPF40A-212ENST00000545856 PARD3BQ8TEW8 1205 aa17.4■□□□□ 0.38
PRPF40A-212ENST00000545856 SLC35C1Q96A29 364 aa17.4■□□□□ 0.38
PRPF40A-212ENST00000545856 IQCDQ96DY2 449 aa17.4■□□□□ 0.38
PRPF40A-212ENST00000545856 SAAL1Q96ER3 474 aa17.4■□□□□ 0.38
PRPF40A-212ENST00000545856 FNBP1Q96RU3 617 aa17.4■□□□□ 0.38
PRPF40A-212ENST00000545856 PPP1R12CQ9BZL4 782 aa17.4■□□□□ 0.38
PRPF40A-212ENST00000545856 IKZF4Q9H2S9 585 aa17.4■□□□□ 0.38
PRPF40A-212ENST00000545856 TMX1Q9H3N1 280 aa17.4■□□□□ 0.38
PRPF40A-212ENST00000545856 GIT1Q9Y2X7 761 aa17.4■□□□□ 0.38
PRPF40A-212ENST00000545856 C2CD2Q9Y426 696 aa17.4■□□□□ 0.38
PRPF40A-212ENST00000545856 A0A1B0GTH6 734 aa17.39■□□□□ 0.37
PRPF40A-212ENST00000545856 ABHD14A-ACY1A0A1B0GW23 586 aa17.39■□□□□ 0.37
PRPF40A-212ENST00000545856 LGALS16A8MUM7 142 aa17.39■□□□□ 0.37
PRPF40A-212ENST00000545856 HOXA2O43364 376 aa17.39■□□□□ 0.37
PRPF40A-212ENST00000545856 XPOTO43592 962 aaKnown RBP17.39■□□□□ 0.37
PRPF40A-212ENST00000545856 ACTN1P12814 892 aa17.39■□□□□ 0.37
PRPF40A-212ENST00000545856 CYP2C18P33260 490 aa17.39■□□□□ 0.37
PRPF40A-212ENST00000545856 FAM189BP81408 668 aa17.39■□□□□ 0.37
PRPF40A-212ENST00000545856 FANCCQ00597 558 aa17.39■□□□□ 0.37
PRPF40A-212ENST00000545856 APTXQ7Z2E3 356 aaKnown RBP17.39■□□□□ 0.37
PRPF40A-212ENST00000545856 ZBTB33Q86T24 672 aa17.39■□□□□ 0.37
PRPF40A-212ENST00000545856 ANP32BQ92688 251 aaKnown RBP17.39■□□□□ 0.37
PRPF40A-212ENST00000545856 PRDM5Q9NQX1 630 aaPredicted RBP17.39■□□□□ 0.37
PRPF40A-212ENST00000545856 PCDHB2Q9Y5E7 798 aa17.39■□□□□ 0.37
PRPF40A-212ENST00000545856 TDRD15B5MCY1 1934 aaKnown RBP17.38■□□□□ 0.37
PRPF40A-212ENST00000545856 C9IYK1 514 aa17.38■□□□□ 0.37
PRPF40A-212ENST00000545856 INPPL1O15357 1258 aa17.38■□□□□ 0.37
PRPF40A-212ENST00000545856 AFPP02771 609 aaKnown RBP17.38■□□□□ 0.37
PRPF40A-212ENST00000545856 ATP1A3P13637 1013 aa17.38■□□□□ 0.37
PRPF40A-212ENST00000545856 COPB1P53618 953 aaKnown RBP17.38■□□□□ 0.37
PRPF40A-212ENST00000545856 GPNMBQ14956 572 aa17.38■□□□□ 0.37
PRPF40A-212ENST00000545856 ENOX2Q16206 610 aaKnown RBP17.38■□□□□ 0.37
PRPF40A-212ENST00000545856 VWA3BQ502W6 1294 aa17.38■□□□□ 0.37
PRPF40A-212ENST00000545856 XKR4Q5GH76 650 aa17.38■□□□□ 0.37
PRPF40A-212ENST00000545856 FKBP15Q5T1M5 1219 aa17.38■□□□□ 0.37
PRPF40A-212ENST00000545856 THNSL1Q8IYQ7 743 aa17.38■□□□□ 0.37
PRPF40A-212ENST00000545856 DBF4BQ8NFT6 615 aa17.38■□□□□ 0.37
PRPF40A-212ENST00000545856 MRFAP1L1Q96HT8 127 aa17.38■□□□□ 0.37
PRPF40A-212ENST00000545856 CGRRF1Q99675 332 aa17.38■□□□□ 0.37
PRPF40A-212ENST00000545856 ADAM2Q99965 735 aa17.38■□□□□ 0.37
PRPF40A-212ENST00000545856 NDST4Q9H3R1 872 aa17.38■□□□□ 0.37
PRPF40A-212ENST00000545856 IPPQ9Y573 584 aa17.38■□□□□ 0.37
PRPF40A-212ENST00000545856 UMODL1Q5DID0 1318 aa17.37■□□□□ 0.37
PRPF40A-212ENST00000545856 A0A1W2PQC6 194 aa17.37■□□□□ 0.37
PRPF40A-212ENST00000545856 TTC26A0AVF1 554 aa17.37■□□□□ 0.37
PRPF40A-212ENST00000545856 TRIM43BA6NCK2 446 aa17.37■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms