RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 CLSTN3Q9BQT9 956 aa14.29□□□□□ -0.12
USP28-212ENST00000544750 LXNQ9BS40 222 aa14.29□□□□□ -0.12
USP28-212ENST00000544750 NXF3Q9H4D5 531 aaKnown RBP14.29□□□□□ -0.12
USP28-212ENST00000544750 PCDHGA2Q9Y5H1 932 aa14.29□□□□□ -0.12
USP28-212ENST00000544750 SHISA7A6NL88 538 aa14.28□□□□□ -0.12
USP28-212ENST00000544750 NR1I2O75469 434 aa14.28□□□□□ -0.12
USP28-212ENST00000544750 HNRNPA1P09651 372 aaKnown RBP eCLIP14.28□□□□□ -0.12
USP28-212ENST00000544750 HOXA9P31269 272 aa14.28□□□□□ -0.12
USP28-212ENST00000544750 YWHABP31946 246 aaKnown RBP14.28□□□□□ -0.12
USP28-212ENST00000544750 HSPA4P34932 840 aa14.28□□□□□ -0.12
USP28-212ENST00000544750 CREMQ03060 361 aa14.28□□□□□ -0.12
USP28-212ENST00000544750 MBTD1Q05BQ5 628 aa14.28□□□□□ -0.12
USP28-212ENST00000544750 SPIRE1Q08AE8 756 aa14.28□□□□□ -0.12
USP28-212ENST00000544750 GRIK3Q13003 919 aa14.28□□□□□ -0.12
USP28-212ENST00000544750 EPHA7Q15375 998 aa14.28□□□□□ -0.12
USP28-212ENST00000544750 SLC44A4Q53GD3 710 aa14.28□□□□□ -0.12
USP28-212ENST00000544750 RSPO2Q6UXX9 243 aaPredicted RBP14.28□□□□□ -0.12
USP28-212ENST00000544750 MTSS1LQ765P7 747 aa14.28□□□□□ -0.12
USP28-212ENST00000544750 FAM177A1Q8N128 213 aaPredicted RBP14.28□□□□□ -0.12
USP28-212ENST00000544750 LNX1Q8TBB1 728 aaPredicted RBP14.28□□□□□ -0.12
USP28-212ENST00000544750 RABGGTAQ92696 567 aa14.28□□□□□ -0.12
USP28-212ENST00000544750 HAS1Q92839 578 aa14.28□□□□□ -0.12
USP28-212ENST00000544750 FGF13Q92913 245 aa14.28□□□□□ -0.12
USP28-212ENST00000544750 CLDN23Q96B33 292 aa14.28□□□□□ -0.12
USP28-212ENST00000544750 PAAF1Q9BRP4 392 aa14.28□□□□□ -0.12
USP28-212ENST00000544750 BCO2Q9BYV7 579 aa14.28□□□□□ -0.12
USP28-212ENST00000544750 LTB4R2Q9NPC1 389 aa14.28□□□□□ -0.12
USP28-212ENST00000544750 RGL1Q9NZL6 768 aa14.28□□□□□ -0.12
USP28-212ENST00000544750 CACNG4Q9UBN1 327 aa14.28□□□□□ -0.12
USP28-212ENST00000544750 LAMTOR5O43504 91 aa14.27□□□□□ -0.13
USP28-212ENST00000544750 POU2F2P09086 479 aa14.27□□□□□ -0.13
USP28-212ENST00000544750 AKAP5P24588 427 aa14.27□□□□□ -0.13
USP28-212ENST00000544750 MAGEA9P43362 315 aa14.27□□□□□ -0.13
USP28-212ENST00000544750 FZD5Q13467 585 aa14.27□□□□□ -0.13
USP28-212ENST00000544750 MXD4Q14582 209 aaPredicted RBP14.27□□□□□ -0.13
USP28-212ENST00000544750 XKR9Q5GH70 373 aa14.27□□□□□ -0.13
USP28-212ENST00000544750 PPP4R3AQ6IN85 833 aa14.27□□□□□ -0.13
USP28-212ENST00000544750 GALNT17Q6IS24 598 aa14.27□□□□□ -0.13
USP28-212ENST00000544750 GPR161Q8N6U8 529 aaKnown RBP14.27□□□□□ -0.13
USP28-212ENST00000544750 PIK3R5Q8WYR1 880 aa14.27□□□□□ -0.13
USP28-212ENST00000544750 AIFM3Q96NN9 605 aa14.27□□□□□ -0.13
USP28-212ENST00000544750 MTRQ99707 1265 aa14.27□□□□□ -0.13
USP28-212ENST00000544750 APOL6Q9BWW8 343 aa14.27□□□□□ -0.13
USP28-212ENST00000544750 NFKBIZQ9BYH8 718 aa14.27□□□□□ -0.13
USP28-212ENST00000544750 EPC1Q9H2F5 836 aa14.27□□□□□ -0.13
USP28-212ENST00000544750 SPATA6Q9NWH7 488 aaPredicted RBP14.27□□□□□ -0.13
USP28-212ENST00000544750 ZFHX4Q86UP3 3567 aa14.26□□□□□ -0.13
USP28-212ENST00000544750 A0A1B0GUA9 196 aa14.26□□□□□ -0.13
USP28-212ENST00000544750 FAM170BA6NMN3 283 aa14.26□□□□□ -0.13
USP28-212ENST00000544750 INO80B-WBP1J3KQ70 363 aa14.26□□□□□ -0.13
USP28-212ENST00000544750 TBX3O15119 743 aa14.26□□□□□ -0.13
USP28-212ENST00000544750 ADAM12O43184 909 aa14.26□□□□□ -0.13
USP28-212ENST00000544750 DEXIO95424 95 aa14.26□□□□□ -0.13
USP28-212ENST00000544750 C8AP07357 584 aa14.26□□□□□ -0.13
USP28-212ENST00000544750 ARL2P36404 184 aa14.26□□□□□ -0.13
USP28-212ENST00000544750 CSTF1Q05048 431 aaKnown RBP14.26□□□□□ -0.13
USP28-212ENST00000544750 SSRP1Q08945 709 aaKnown RBP14.26□□□□□ -0.13
USP28-212ENST00000544750 CAPSQ13938 189 aa14.26□□□□□ -0.13
USP28-212ENST00000544750 TOB2Q14106 344 aaPredicted RBP14.26□□□□□ -0.13
USP28-212ENST00000544750 HSP90AA2PQ14568 343 aaPredicted RBP14.26□□□□□ -0.13
USP28-212ENST00000544750 POTEHQ6S545 545 aa14.26□□□□□ -0.13
USP28-212ENST00000544750 OTUD6AQ7L8S5 288 aa14.26□□□□□ -0.13
USP28-212ENST00000544750 KRT25Q7Z3Z0 450 aa14.26□□□□□ -0.13
USP28-212ENST00000544750 ITFG1Q8TB96 612 aa14.26□□□□□ -0.13
USP28-212ENST00000544750 ASAP3Q8TDY4 903 aa14.26□□□□□ -0.13
USP28-212ENST00000544750 DYDC2Q96IM9 177 aa14.26□□□□□ -0.13
USP28-212ENST00000544750 ZSCAN32Q9NX65 697 aa14.26□□□□□ -0.13
USP28-212ENST00000544750 NCDNQ9UBB6 729 aa14.26□□□□□ -0.13
USP28-212ENST00000544750 TICRRQ7Z2Z1 1910 aa14.25□□□□□ -0.13
USP28-212ENST00000544750 PDCD11Q14690 1871 aaKnown RBP14.25□□□□□ -0.13
USP28-212ENST00000544750 SF3B1O75533 1304 aaKnown RBP eCLIP14.25□□□□□ -0.13
USP28-212ENST00000544750 CHD8Q9HCK8 2581 aa14.25□□□□□ -0.13
USP28-212ENST00000544750 B4GALT5O43286 388 aa14.25□□□□□ -0.13
USP28-212ENST00000544750 TADA2AO75478 443 aa14.25□□□□□ -0.13
USP28-212ENST00000544750 SLITRK3O94933 977 aa14.25□□□□□ -0.13
USP28-212ENST00000544750 CD72P21854 359 aa14.25□□□□□ -0.13
USP28-212ENST00000544750 SDHBP21912 280 aa14.25□□□□□ -0.13
USP28-212ENST00000544750 TARSP26639 723 aaKnown RBP14.25□□□□□ -0.13
USP28-212ENST00000544750 RPS9P46781 194 aaKnown RBP14.25□□□□□ -0.13
USP28-212ENST00000544750 TUSC3Q13454 348 aa14.25□□□□□ -0.13
USP28-212ENST00000544750 CTTNQ14247 550 aaKnown RBP14.25□□□□□ -0.13
USP28-212ENST00000544750 UBXN2BQ14CS0 331 aa14.25□□□□□ -0.13
USP28-212ENST00000544750 NAB2Q15742 525 aa14.25□□□□□ -0.13
USP28-212ENST00000544750 PSMD5Q16401 504 aa14.25□□□□□ -0.13
USP28-212ENST00000544750 PPM1LQ5SGD2 360 aa14.25□□□□□ -0.13
USP28-212ENST00000544750 SLC27A1Q6PCB7 646 aa14.25□□□□□ -0.13
USP28-212ENST00000544750 CDR2LQ86X02 465 aaPredicted RBP14.25□□□□□ -0.13
USP28-212ENST00000544750 NPAS3Q8IXF0 933 aa14.25□□□□□ -0.13
USP28-212ENST00000544750 TRIM22Q8IYM9 498 aa14.25□□□□□ -0.13
USP28-212ENST00000544750 HACE1Q8IYU2 909 aa14.25□□□□□ -0.13
USP28-212ENST00000544750 TTPALQ9BTX7 342 aa14.25□□□□□ -0.13
USP28-212ENST00000544750 SLKQ9H2G2 1235 aaPredicted RBP14.25□□□□□ -0.13
USP28-212ENST00000544750 ZSWIM4Q9H7M6 989 aa14.25□□□□□ -0.13
USP28-212ENST00000544750 PRMT8Q9NR22 394 aaPredicted RBP14.25□□□□□ -0.13
USP28-212ENST00000544750 KLK14Q9P0G3 267 aa14.25□□□□□ -0.13
USP28-212ENST00000544750 SMG5Q9UPR3 1016 aaKnown RBP14.25□□□□□ -0.13
USP28-212ENST00000544750 PRR5-ARHGAP8B1AHC4 643 aa14.24□□□□□ -0.13
USP28-212ENST00000544750 PTGESO14684 152 aa14.24□□□□□ -0.13
USP28-212ENST00000544750 CCL16O15467 120 aa14.24□□□□□ -0.13
USP28-212ENST00000544750 KIF4AO95239 1232 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms