RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 ARIH2O95376 493 aa17.58■□□□□ 0.41
COL4A1-204ENST00000543140 SYF2O95926 243 aaKnown RBP17.58■□□□□ 0.41
COL4A1-204ENST00000543140 CYP11B1P15538 503 aa17.58■□□□□ 0.41
COL4A1-204ENST00000543140 ARL2P36404 184 aa17.58■□□□□ 0.41
COL4A1-204ENST00000543140 EPHB4P54760 987 aa17.58■□□□□ 0.41
COL4A1-204ENST00000543140 FMO1Q01740 532 aa17.58■□□□□ 0.41
COL4A1-204ENST00000543140 SEZ6Q53EL9 994 aa17.58■□□□□ 0.41
COL4A1-204ENST00000543140 C9orf131Q5VYM1 1079 aa17.58■□□□□ 0.41
COL4A1-204ENST00000543140 TRIM50Q86XT4 487 aa17.58■□□□□ 0.41
COL4A1-204ENST00000543140 ANKRD13AQ8IZ07 590 aa17.58■□□□□ 0.41
COL4A1-204ENST00000543140 UPF1Q92900 1129 aaKnown RBP eCLIP17.58■□□□□ 0.41
COL4A1-204ENST00000543140 GDF3Q9NR23 364 aa17.58■□□□□ 0.41
COL4A1-204ENST00000543140 RTN2O75298 545 aa17.58■□□□□ 0.4
COL4A1-204ENST00000543140 EDN1P05305 212 aa17.58■□□□□ 0.4
COL4A1-204ENST00000543140 FAM153BP0C7A2 387 aa17.58■□□□□ 0.4
COL4A1-204ENST00000543140 HARSP12081 509 aaKnown RBP17.58■□□□□ 0.4
COL4A1-204ENST00000543140 GTF2H1P32780 548 aa17.58■□□□□ 0.4
COL4A1-204ENST00000543140 NAMPTP43490 491 aa17.58■□□□□ 0.4
COL4A1-204ENST00000543140 GPC5P78333 572 aa17.58■□□□□ 0.4
COL4A1-204ENST00000543140 NEDD9Q14511 834 aa17.58■□□□□ 0.4
COL4A1-204ENST00000543140 FAM153CQ494X1 144 aa17.58■□□□□ 0.4
COL4A1-204ENST00000543140 DCAF12L1Q5VU92 463 aa17.58■□□□□ 0.4
COL4A1-204ENST00000543140 NAA35Q5VZE5 725 aa17.58■□□□□ 0.4
COL4A1-204ENST00000543140 ADAT2Q7Z6V5 191 aaKnown RBP17.58■□□□□ 0.4
COL4A1-204ENST00000543140 FAM71BQ8TC56 605 aa17.58■□□□□ 0.4
COL4A1-204ENST00000543140 CASKIN2Q8WXE0 1202 aa17.58■□□□□ 0.4
COL4A1-204ENST00000543140 PSPC1Q8WXF1 523 aaKnown RBP17.58■□□□□ 0.4
COL4A1-204ENST00000543140 FNBP1Q96RU3 617 aa17.58■□□□□ 0.4
COL4A1-204ENST00000543140 MED4Q9NPJ6 270 aa17.58■□□□□ 0.4
COL4A1-204ENST00000543140 FAM153AQ9UHL3 310 aa17.58■□□□□ 0.4
COL4A1-204ENST00000543140 DDX3YO15523 660 aaKnown RBP17.57■□□□□ 0.4
COL4A1-204ENST00000543140 FGGP02679 453 aa17.57■□□□□ 0.4
COL4A1-204ENST00000543140 AARSP49588 968 aaKnown RBP eCLIP17.57■□□□□ 0.4
COL4A1-204ENST00000543140 ZNF211Q13398 564 aaPredicted RBP17.57■□□□□ 0.4
COL4A1-204ENST00000543140 RHOT2Q8IXI1 618 aa17.57■□□□□ 0.4
COL4A1-204ENST00000543140 NRBP2Q9NSY0 501 aa17.57■□□□□ 0.4
COL4A1-204ENST00000543140 RBPJLQ9UBG7 517 aa17.57■□□□□ 0.4
COL4A1-204ENST00000543140 ALG6Q9Y672 507 aa17.57■□□□□ 0.4
COL4A1-204ENST00000543140 PTPRJQ12913 1337 aa17.57■□□□□ 0.4
COL4A1-204ENST00000543140 GOLGA6BA6NDN3 693 aa17.57■□□□□ 0.4
COL4A1-204ENST00000543140 AGPSO00116 658 aa17.57■□□□□ 0.4
COL4A1-204ENST00000543140 SART1O43290 800 aaKnown RBP17.57■□□□□ 0.4
COL4A1-204ENST00000543140 YBX3P16989 372 aaKnown RBP eCLIP17.57■□□□□ 0.4
COL4A1-204ENST00000543140 NF2P35240 595 aa17.57■□□□□ 0.4
COL4A1-204ENST00000543140 GUCY2FP51841 1108 aa17.57■□□□□ 0.4
COL4A1-204ENST00000543140 CRELD2Q6UXH1 353 aaPredicted RBP17.57■□□□□ 0.4
COL4A1-204ENST00000543140 TSEN2Q8NCE0 465 aaKnown RBP17.57■□□□□ 0.4
COL4A1-204ENST00000543140 GLG1Q92896 1179 aa17.57■□□□□ 0.4
COL4A1-204ENST00000543140 ZKSCAN7Q9P0L1 754 aaPredicted RBP17.57■□□□□ 0.4
COL4A1-204ENST00000543140 SPDYE5A6NIY4 337 aa17.56■□□□□ 0.4
COL4A1-204ENST00000543140 RNF40O75150 1001 aa17.56■□□□□ 0.4
COL4A1-204ENST00000543140 CLSTN1O94985 981 aa17.56■□□□□ 0.4
COL4A1-204ENST00000543140 PDE6CP51160 858 aa17.56■□□□□ 0.4
COL4A1-204ENST00000543140 BIRC3Q13489 604 aa17.56■□□□□ 0.4
COL4A1-204ENST00000543140 CAPSQ13938 189 aa17.56■□□□□ 0.4
COL4A1-204ENST00000543140 TARBP2Q15633 366 aaKnown RBP17.56■□□□□ 0.4
COL4A1-204ENST00000543140 HSDL1Q3SXM5 330 aa17.56■□□□□ 0.4
COL4A1-204ENST00000543140 FAM160B1Q5W0V3 765 aa17.56■□□□□ 0.4
COL4A1-204ENST00000543140 SPOPLQ6IQ16 392 aa17.56■□□□□ 0.4
COL4A1-204ENST00000543140 EMBQ6PCB8 327 aa17.56■□□□□ 0.4
COL4A1-204ENST00000543140 METTL7BQ6UX53 244 aa17.56■□□□□ 0.4
COL4A1-204ENST00000543140 RASGEF1CQ8N431 466 aa17.56■□□□□ 0.4
COL4A1-204ENST00000543140 SEPT1Q8WYJ6 367 aa17.56■□□□□ 0.4
COL4A1-204ENST00000543140 OPTNQ96CV9 577 aa17.56■□□□□ 0.4
COL4A1-204ENST00000543140 MSTO1Q9BUK6 570 aa17.56■□□□□ 0.4
COL4A1-204ENST00000543140 C1orf112Q9NSG2 853 aa17.56■□□□□ 0.4
COL4A1-204ENST00000543140 AGTPBP1Q9UPW5 1226 aa17.56■□□□□ 0.4
COL4A1-204ENST00000543140 TTLL13PA6NNM8 815 aa17.56■□□□□ 0.4
COL4A1-204ENST00000543140 CXCL11O14625 94 aa17.56■□□□□ 0.4
COL4A1-204ENST00000543140 TNFRSF8P28908 595 aa17.56■□□□□ 0.4
COL4A1-204ENST00000543140 CYP2C19P33261 490 aa17.56■□□□□ 0.4
COL4A1-204ENST00000543140 MESDQ14696 234 aa17.56■□□□□ 0.4
COL4A1-204ENST00000543140 ALG3Q92685 438 aa17.56■□□□□ 0.4
COL4A1-204ENST00000543140 BTBD6Q96KE9 485 aa17.56■□□□□ 0.4
COL4A1-204ENST00000543140 RBAKQ9NYW8 714 aaPredicted RBP17.56■□□□□ 0.4
COL4A1-204ENST00000543140 AMACRQ9UHK6 382 aa17.56■□□□□ 0.4
COL4A1-204ENST00000543140 KCNG1Q9UIX4 513 aa17.56■□□□□ 0.4
COL4A1-204ENST00000543140 NR2E1Q9Y466 385 aa17.56■□□□□ 0.4
COL4A1-204ENST00000543140 SOCS7O14512 581 aa17.55■□□□□ 0.4
COL4A1-204ENST00000543140 CDR2Q01850 454 aa17.55■□□□□ 0.4
COL4A1-204ENST00000543140 PSMD6Q15008 389 aa17.55■□□□□ 0.4
COL4A1-204ENST00000543140 TMEM63BQ5T3F8 832 aa17.55■□□□□ 0.4
COL4A1-204ENST00000543140 TDRD10Q5VZ19 366 aaKnown RBP17.55■□□□□ 0.4
COL4A1-204ENST00000543140 AADACL2Q6P093 401 aa17.55■□□□□ 0.4
COL4A1-204ENST00000543140 C15orf39Q6ZRI6 1047 aa17.55■□□□□ 0.4
COL4A1-204ENST00000543140 PRPF31Q8WWY3 499 aaKnown RBP17.55■□□□□ 0.4
COL4A1-204ENST00000543140 FGD4Q96M96 766 aa17.55■□□□□ 0.4
COL4A1-204ENST00000543140 AZI2Q9H6S1 392 aa17.55■□□□□ 0.4
COL4A1-204ENST00000543140 KIAA1586Q9HCI6 787 aa17.55■□□□□ 0.4
COL4A1-204ENST00000543140 STYXL1Q9Y6J8 313 aa17.55■□□□□ 0.4
COL4A1-204ENST00000543140 HLA-DRAP01903 254 aa17.55■□□□□ 0.4
COL4A1-204ENST00000543140 TGFB3P10600 412 aa17.55■□□□□ 0.4
COL4A1-204ENST00000543140 GZMAP12544 262 aa17.55■□□□□ 0.4
COL4A1-204ENST00000543140 MARCKSL1P49006 195 aa17.55■□□□□ 0.4
COL4A1-204ENST00000543140 PAK2Q13177 524 aa17.55■□□□□ 0.4
COL4A1-204ENST00000543140 DDX42Q86XP3 938 aaKnown RBP eCLIP17.55■□□□□ 0.4
COL4A1-204ENST00000543140 FBXO16Q8IX29 292 aaPredicted RBP17.55■□□□□ 0.4
COL4A1-204ENST00000543140 RNPC3Q96LT9 517 aaKnown RBP17.55■□□□□ 0.4
COL4A1-204ENST00000543140 NOP56O00567 594 aaKnown RBP17.54■□□□□ 0.4
COL4A1-204ENST00000543140 SRGAP2CP0DJJ0 459 aa17.54■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms