RNA–Protein interactions for RNA: ENST00000543016.1

DDX55-210, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 329 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-210ENST00000543016 XXYLT1Q8NBI6 393 aa13.28□□□□□ -0.28
DDX55-210ENST00000543016 URGCPQ8TCY9 931 aa13.28□□□□□ -0.28
DDX55-210ENST00000543016 FBXL18Q96ME1 805 aa13.28□□□□□ -0.28
DDX55-210ENST00000543016 YME1L1Q96TA2 773 aa13.28□□□□□ -0.28
DDX55-210ENST00000543016 NXF3Q9H4D5 531 aaKnown RBP13.28□□□□□ -0.28
DDX55-210ENST00000543016 ANO10Q9NW15 660 aa13.28□□□□□ -0.28
DDX55-210ENST00000543016 PCDHA11Q9Y5I1 949 aa13.28□□□□□ -0.28
DDX55-210ENST00000543016 PPP1R3GB7ZBB8 358 aa13.27□□□□□ -0.29
DDX55-210ENST00000543016 MAPK13O15264 365 aa13.27□□□□□ -0.29
DDX55-210ENST00000543016 TLL1O43897 1013 aa13.27□□□□□ -0.29
DDX55-210ENST00000543016 FAM189A1O60320 539 aa13.27□□□□□ -0.29
DDX55-210ENST00000543016 OFD1O75665 1012 aa13.27□□□□□ -0.29
DDX55-210ENST00000543016 FGFR1OPO95684 399 aaKnown RBP13.27□□□□□ -0.29
DDX55-210ENST00000543016 ADRB2P07550 413 aa13.27□□□□□ -0.29
DDX55-210ENST00000543016 ERCC5P28715 1186 aaPredicted RBP13.27□□□□□ -0.29
DDX55-210ENST00000543016 FKBP3Q00688 224 aaKnown RBP13.27□□□□□ -0.29
DDX55-210ENST00000543016 ENPEPQ07075 957 aa13.27□□□□□ -0.29
DDX55-210ENST00000543016 SURF1Q15526 300 aa13.27□□□□□ -0.29
DDX55-210ENST00000543016 ZCWPW2Q504Y3 356 aa13.27□□□□□ -0.29
DDX55-210ENST00000543016 XKR4Q5GH76 650 aa13.27□□□□□ -0.29
DDX55-210ENST00000543016 AGMOQ6ZNB7 445 aa13.27□□□□□ -0.29
DDX55-210ENST00000543016 NT5DC4Q86YG4 428 aa13.27□□□□□ -0.29
DDX55-210ENST00000543016 THNSL1Q8IYQ7 743 aa13.27□□□□□ -0.29
DDX55-210ENST00000543016 SMYD4Q8IYR2 804 aaPredicted RBP13.27□□□□□ -0.29
DDX55-210ENST00000543016 RNF169Q8NCN4 708 aa13.27□□□□□ -0.29
DDX55-210ENST00000543016 P2RX5Q93086 422 aa13.27□□□□□ -0.29
DDX55-210ENST00000543016 ZNF689Q96CS4 500 aaPredicted RBP13.27□□□□□ -0.29
DDX55-210ENST00000543016 CBWD1Q9BRT8 395 aa13.27□□□□□ -0.29
DDX55-210ENST00000543016 RPF1Q9H9Y2 349 aaKnown RBP13.27□□□□□ -0.29
DDX55-210ENST00000543016 DMAC2Q9NW81 257 aa13.27□□□□□ -0.29
DDX55-210ENST00000543016 SNTG2Q9NY99 539 aa13.27□□□□□ -0.29
DDX55-210ENST00000543016 HSPBP1Q9NZL4 362 aa13.27□□□□□ -0.29
DDX55-210ENST00000543016 PARP2Q9UGN5 583 aa13.27□□□□□ -0.29
DDX55-210ENST00000543016 MSRAQ9UJ68 235 aa13.27□□□□□ -0.29
DDX55-210ENST00000543016 CPSF3Q9UKF6 684 aaKnown RBP13.27□□□□□ -0.29
DDX55-210ENST00000543016 MAPK8IP1Q9UQF2 711 aa13.27□□□□□ -0.29
DDX55-210ENST00000543016 ZNF233A6NK53 670 aa13.26□□□□□ -0.29
DDX55-210ENST00000543016 CETN3O15182 167 aa13.26□□□□□ -0.29
DDX55-210ENST00000543016 RECQL4O94761 1208 aa13.26□□□□□ -0.29
DDX55-210ENST00000543016 UPP2O95045 317 aa13.26□□□□□ -0.29
DDX55-210ENST00000543016 IL18RAPO95256 599 aa13.26□□□□□ -0.29
DDX55-210ENST00000543016 NR3C1P04150 777 aa13.26□□□□□ -0.29
DDX55-210ENST00000543016 HARSP12081 509 aaKnown RBP13.26□□□□□ -0.29
DDX55-210ENST00000543016 PAK1Q13153 545 aa13.26□□□□□ -0.29
DDX55-210ENST00000543016 STX1AQ16623 288 aa13.26□□□□□ -0.29
DDX55-210ENST00000543016 NOMO2Q5JPE7 1267 aa13.26□□□□□ -0.29
DDX55-210ENST00000543016 ISM2Q6H9L7 571 aa13.26□□□□□ -0.29
DDX55-210ENST00000543016 ALKAL1Q6UXT8 129 aa13.26□□□□□ -0.29
DDX55-210ENST00000543016 USP37Q86T82 979 aa13.26□□□□□ -0.29
DDX55-210ENST00000543016 LRRC43Q8N309 656 aa13.26□□□□□ -0.29
DDX55-210ENST00000543016 PIP4P2Q8N4L2 257 aa13.26□□□□□ -0.29
DDX55-210ENST00000543016 SP7Q8TDD2 431 aaPredicted RBP13.26□□□□□ -0.29
DDX55-210ENST00000543016 RPS6KC1Q96S38 1066 aa13.26□□□□□ -0.29
DDX55-210ENST00000543016 MKNK1Q9BUB5 465 aa13.26□□□□□ -0.29
DDX55-210ENST00000543016 HAPLN2Q9GZV7 340 aa13.26□□□□□ -0.29
DDX55-210ENST00000543016 SEMA6BQ9H3T3 888 aa13.26□□□□□ -0.29
DDX55-210ENST00000543016 ASB7Q9H672 318 aa13.26□□□□□ -0.29
DDX55-210ENST00000543016 RC3H2Q9HBD1 1191 aaKnown RBP13.26□□□□□ -0.29
DDX55-210ENST00000543016 SLC38A7Q9NVC3 462 aa13.26□□□□□ -0.29
DDX55-210ENST00000543016 PCDH10Q9P2E7 1040 aa13.26□□□□□ -0.29
DDX55-210ENST00000543016 RWDD2AQ9UIY3 292 aa13.26□□□□□ -0.29
DDX55-210ENST00000543016 COLQQ9Y215 455 aaPredicted RBP13.26□□□□□ -0.29
DDX55-210ENST00000543016 FRMD4BQ9Y2L6 1034 aa13.26□□□□□ -0.29
DDX55-210ENST00000543016 DERAQ9Y315 318 aa13.26□□□□□ -0.29
DDX55-210ENST00000543016 RWDD3Q9Y3V2 267 aa13.26□□□□□ -0.29
DDX55-210ENST00000543016 HES2Q9Y543 173 aa13.26□□□□□ -0.29
DDX55-210ENST00000543016 ARL5CA6NH57 179 aa13.25□□□□□ -0.29
DDX55-210ENST00000543016 SPDYE4A6NLX3 237 aa13.25□□□□□ -0.29
DDX55-210ENST00000543016 TISP43B9A030 160 aa13.25□□□□□ -0.29
DDX55-210ENST00000543016 XPOTO43592 962 aaKnown RBP13.25□□□□□ -0.29
DDX55-210ENST00000543016 EXOC3O60645 756 aa13.25□□□□□ -0.29
DDX55-210ENST00000543016 CAVIN2O95810 425 aa13.25□□□□□ -0.29
DDX55-210ENST00000543016 CCDC192P0DO97 292 aa13.25□□□□□ -0.29
DDX55-210ENST00000543016 KCNE1P15382 129 aa13.25□□□□□ -0.29
DDX55-210ENST00000543016 PPP2R3AQ06190 1150 aa13.25□□□□□ -0.29
DDX55-210ENST00000543016 GRIK3Q13003 919 aa13.25□□□□□ -0.29
DDX55-210ENST00000543016 ADAM9Q13443 819 aa13.25□□□□□ -0.29
DDX55-210ENST00000543016 BTG3Q14201 252 aaPredicted RBP13.25□□□□□ -0.29
DDX55-210ENST00000543016 CLLU1OSQ5K130 101 aa13.25□□□□□ -0.29
DDX55-210ENST00000543016 BRSK2Q8IWQ3 736 aa13.25□□□□□ -0.29
DDX55-210ENST00000543016 SPDYE1Q8NFV5 336 aaPredicted RBP13.25□□□□□ -0.29
DDX55-210ENST00000543016 HELQQ8TDG4 1101 aa13.25□□□□□ -0.29
DDX55-210ENST00000543016 NELFBQ8WX92 580 aa13.25□□□□□ -0.29
DDX55-210ENST00000543016 LPPQ93052 612 aa13.25□□□□□ -0.29
DDX55-210ENST00000543016 SNX27Q96L92 541 aa13.25□□□□□ -0.29
DDX55-210ENST00000543016 CEP63Q96MT8 703 aa13.25□□□□□ -0.29
DDX55-210ENST00000543016 SAMD11Q96NU1 681 aa13.25□□□□□ -0.29
DDX55-210ENST00000543016 CASD1Q96PB1 797 aa13.25□□□□□ -0.29
DDX55-210ENST00000543016 GAD1Q99259 594 aa13.25□□□□□ -0.29
DDX55-210ENST00000543016 FAM213AQ9BRX8 229 aa13.25□□□□□ -0.29
DDX55-210ENST00000543016 APOL6Q9BWW8 343 aa13.25□□□□□ -0.29
DDX55-210ENST00000543016 NAT10Q9H0A0 1025 aaKnown RBP13.25□□□□□ -0.29
DDX55-210ENST00000543016 AAASQ9NRG9 546 aa13.25□□□□□ -0.29
DDX55-210ENST00000543016 RNF19AQ9NV58 838 aa13.25□□□□□ -0.29
DDX55-210ENST00000543016 CNTN3Q9P232 1028 aa13.25□□□□□ -0.29
DDX55-210ENST00000543016 COL4A6Q14031 1691 aa13.24□□□□□ -0.29
DDX55-210ENST00000543016 TTC26A0AVF1 554 aa13.24□□□□□ -0.29
DDX55-210ENST00000543016 TBKBP1A7MCY6 615 aa13.24□□□□□ -0.29
DDX55-210ENST00000543016 CLIC2O15247 247 aa13.24□□□□□ -0.29
DDX55-210ENST00000543016 GNA14O95837 355 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms