RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 SLC47A2Q86VL8 602 aa14.85□□□□□ -0.03
RTN3-210ENST00000540798 FAM81BQ96LP2 452 aa14.85□□□□□ -0.03
RTN3-210ENST00000540798 ZKSCAN7Q9P0L1 754 aaPredicted RBP14.85□□□□□ -0.03
RTN3-210ENST00000540798 CYP26A1O43174 497 aa14.84□□□□□ -0.03
RTN3-210ENST00000540798 CEP104O60308 925 aa14.84□□□□□ -0.03
RTN3-210ENST00000540798 HEXIM1O94992 359 aaKnown RBP14.84□□□□□ -0.03
RTN3-210ENST00000540798 CYP2C19P33261 490 aa14.84□□□□□ -0.03
RTN3-210ENST00000540798 COPB2P35606 906 aa14.84□□□□□ -0.03
RTN3-210ENST00000540798 LIG4P49917 911 aa14.84□□□□□ -0.03
RTN3-210ENST00000540798 GPC5P78333 572 aa14.84□□□□□ -0.03
RTN3-210ENST00000540798 DCAF12L1Q5VU92 463 aa14.84□□□□□ -0.03
RTN3-210ENST00000540798 CDCA5Q96FF9 252 aa14.84□□□□□ -0.03
RTN3-210ENST00000540798 L3MBTL3Q96JM7 780 aaPredicted RBP14.84□□□□□ -0.03
RTN3-210ENST00000540798 FHDC1Q9C0D6 1143 aaPredicted RBP14.84□□□□□ -0.03
RTN3-210ENST00000540798 PSD3Q9NYI0 1048 aa14.84□□□□□ -0.03
RTN3-210ENST00000540798 CCDC188H7C350 402 aa14.84□□□□□ -0.03
RTN3-210ENST00000540798 RAD51CO43502 376 aa14.84□□□□□ -0.03
RTN3-210ENST00000540798 GRIN3BO60391 1043 aa14.84□□□□□ -0.03
RTN3-210ENST00000540798 MAFO75444 373 aaPredicted RBP14.84□□□□□ -0.03
RTN3-210ENST00000540798 CYP11B1P15538 503 aa14.84□□□□□ -0.03
RTN3-210ENST00000540798 CDR2Q01850 454 aa14.84□□□□□ -0.03
RTN3-210ENST00000540798 STRN3Q13033 797 aa14.84□□□□□ -0.03
RTN3-210ENST00000540798 FAM160B1Q5W0V3 765 aa14.84□□□□□ -0.03
RTN3-210ENST00000540798 MORC4Q8TE76 937 aa14.84□□□□□ -0.03
RTN3-210ENST00000540798 SLC7A3Q8WY07 619 aa14.84□□□□□ -0.03
RTN3-210ENST00000540798 BICD1Q96G01 975 aa14.84□□□□□ -0.03
RTN3-210ENST00000540798 SPON1Q9HCB6 807 aa14.84□□□□□ -0.03
RTN3-210ENST00000540798 RBPJLQ9UBG7 517 aa14.84□□□□□ -0.03
RTN3-210ENST00000540798 LGR5O75473 907 aa14.83□□□□□ -0.03
RTN3-210ENST00000540798 C4BPAP04003 597 aaKnown RBP14.83□□□□□ -0.03
RTN3-210ENST00000540798 EDN1P05305 212 aa14.83□□□□□ -0.03
RTN3-210ENST00000540798 WNT7BP56706 349 aa14.83□□□□□ -0.03
RTN3-210ENST00000540798 ZACNQ401N2 412 aa14.83□□□□□ -0.03
RTN3-210ENST00000540798 SLFN12LQ6IEE8 588 aa14.83□□□□□ -0.03
RTN3-210ENST00000540798 SEPT1Q8WYJ6 367 aa14.83□□□□□ -0.03
RTN3-210ENST00000540798 CARD9Q9H257 536 aa14.83□□□□□ -0.03
RTN3-210ENST00000540798 TXNRD2Q9NNW7 524 aa14.83□□□□□ -0.03
RTN3-210ENST00000540798 NRBP2Q9NSY0 501 aa14.83□□□□□ -0.03
RTN3-210ENST00000540798 SEPT11Q9NVA2 429 aaKnown RBP14.83□□□□□ -0.03
RTN3-210ENST00000540798 CYP1A2P05177 515 aa14.83□□□□□ -0.04
RTN3-210ENST00000540798 STAT5BP51692 787 aa14.83□□□□□ -0.04
RTN3-210ENST00000540798 NLRP11P59045 1033 aaKnown RBP14.83□□□□□ -0.04
RTN3-210ENST00000540798 USP50Q70EL3 339 aaPredicted RBP14.83□□□□□ -0.04
RTN3-210ENST00000540798 ZC3H15Q8WU90 426 aaKnown RBP14.83□□□□□ -0.04
RTN3-210ENST00000540798 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP14.83□□□□□ -0.04
RTN3-210ENST00000540798 TATDN2Q93075 761 aa14.83□□□□□ -0.04
RTN3-210ENST00000540798 EXOC4Q96A65 974 aa14.83□□□□□ -0.04
RTN3-210ENST00000540798 HINFPQ9BQA5 517 aa14.83□□□□□ -0.04
RTN3-210ENST00000540798 AGO2Q9UKV8 859 aaKnown RBP14.83□□□□□ -0.04
RTN3-210ENST00000540798 A0A0B4J269 797 aa14.83□□□□□ -0.04
RTN3-210ENST00000540798 MMEP08473 750 aa14.83□□□□□ -0.04
RTN3-210ENST00000540798 DLATP10515 647 aaKnown RBP14.83□□□□□ -0.04
RTN3-210ENST00000540798 TCF7P36402 384 aaPredicted RBP14.83□□□□□ -0.04
RTN3-210ENST00000540798 CAPSQ13938 189 aa14.83□□□□□ -0.04
RTN3-210ENST00000540798 KCNV1Q6PIU1 500 aa14.83□□□□□ -0.04
RTN3-210ENST00000540798 SND1Q7KZF4 910 aaKnown RBP eCLIP14.83□□□□□ -0.041e-9■■■■□ 22.5
RTN3-210ENST00000540798 CASKIN2Q8WXE0 1202 aa14.83□□□□□ -0.04
RTN3-210ENST00000540798 ADAM21Q9UKJ8 722 aa14.83□□□□□ -0.04
RTN3-210ENST00000540798 ARIH2O95376 493 aa14.82□□□□□ -0.04
RTN3-210ENST00000540798 GGPS1O95749 300 aa14.82□□□□□ -0.04
RTN3-210ENST00000540798 CARSP49589 748 aaKnown RBP14.82□□□□□ -0.04
RTN3-210ENST00000540798 RNASE9P60153 205 aaKnown RBP14.82□□□□□ -0.04
RTN3-210ENST00000540798 PTPROQ16827 1216 aa14.82□□□□□ -0.04
RTN3-210ENST00000540798 GPAT2Q6NUI2 795 aa14.82□□□□□ -0.04
RTN3-210ENST00000540798 MREGQ8N565 214 aa14.82□□□□□ -0.04
RTN3-210ENST00000540798 DEPTORQ8TB45 409 aa14.82□□□□□ -0.04
RTN3-210ENST00000540798 GDAP1L1Q96MZ0 367 aa14.82□□□□□ -0.04
RTN3-210ENST00000540798 EPB41L5Q9HCM4 733 aa14.82□□□□□ -0.04
RTN3-210ENST00000540798 ACP6Q9NPH0 428 aa14.82□□□□□ -0.04
RTN3-210ENST00000540798 FAN1Q9Y2M0 1017 aa14.82□□□□□ -0.04
RTN3-210ENST00000540798 PTPRJQ12913 1337 aa14.82□□□□□ -0.04
RTN3-210ENST00000540798 ZSWIM8A7E2V4 1837 aa14.82□□□□□ -0.04
RTN3-210ENST00000540798 ZSCAN5CA6NGD5 496 aaPredicted RBP14.82□□□□□ -0.04
RTN3-210ENST00000540798 K7ERI5 159 aa14.82□□□□□ -0.04
RTN3-210ENST00000540798 ADCY3O60266 1144 aa14.82□□□□□ -0.04
RTN3-210ENST00000540798 LDHAP00338 332 aaKnown RBP14.82□□□□□ -0.04
RTN3-210ENST00000540798 POU5F1Q01860 360 aaKnown RBP14.82□□□□□ -0.04
RTN3-210ENST00000540798 GUCY2DQ02846 1103 aa14.82□□□□□ -0.04
RTN3-210ENST00000540798 FAM167AQ96KS9 214 aa14.82□□□□□ -0.04
RTN3-210ENST00000540798 RPS6KC1Q96S38 1066 aa14.82□□□□□ -0.04
RTN3-210ENST00000540798 GPR20Q99678 358 aa14.82□□□□□ -0.04
RTN3-210ENST00000540798 PAGR1Q9BTK6 254 aa14.82□□□□□ -0.04
RTN3-210ENST00000540798 CCDC113Q9H0I3 377 aa14.82□□□□□ -0.04
RTN3-210ENST00000540798 SLITRK6Q9H5Y7 841 aa14.82□□□□□ -0.04
RTN3-210ENST00000540798 LOC102724159A0A0B4J2E5 919 aa14.81□□□□□ -0.04
RTN3-210ENST00000540798 IGKV6-21A0A0C4DH24 114 aa14.81□□□□□ -0.04
RTN3-210ENST00000540798 VNN1O95497 513 aa14.81□□□□□ -0.04
RTN3-210ENST00000540798 PDE6CP51160 858 aa14.81□□□□□ -0.04
RTN3-210ENST00000540798 PAK2Q13177 524 aa14.81□□□□□ -0.04
RTN3-210ENST00000540798 PWP2Q15269 919 aaKnown RBP14.81□□□□□ -0.04
RTN3-210ENST00000540798 LY6KQ17RY6 165 aa14.81□□□□□ -0.04
RTN3-210ENST00000540798 HSP90B2PQ58FF3 399 aa14.81□□□□□ -0.04
RTN3-210ENST00000540798 TDRD10Q5VZ19 366 aaKnown RBP14.81□□□□□ -0.04
RTN3-210ENST00000540798 CDCA2Q69YH5 1023 aaPredicted RBP14.81□□□□□ -0.04
RTN3-210ENST00000540798 MOB2Q70IA6 237 aa14.81□□□□□ -0.04
RTN3-210ENST00000540798 CCDC102AQ96A19 550 aa14.81□□□□□ -0.04
RTN3-210ENST00000540798 SH3GL2Q99962 352 aa14.81□□□□□ -0.04
RTN3-210ENST00000540798 ALG6Q9Y672 507 aa14.81□□□□□ -0.04
RTN3-210ENST00000540798 CNTNAP2Q9UHC6 1331 aa14.81□□□□□ -0.04
RTN3-210ENST00000540798 MCM3APO60318 1980 aa14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms