RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 LRRC71Q8N4P6 559 aa18.17■□□□□ 0.5
USP28-208ENST00000540438 HELQQ8TDG4 1101 aa18.17■□□□□ 0.5
USP28-208ENST00000540438 ANAPC7Q9UJX3 599 aa18.17■□□□□ 0.5
USP28-208ENST00000540438 NOCTQ9UK39 431 aaKnown RBP18.17■□□□□ 0.5
USP28-208ENST00000540438 GOLGA8KD6RF30 607 aa18.17■□□□□ 0.5
USP28-208ENST00000540438 KCNA2P16389 499 aa18.17■□□□□ 0.5
USP28-208ENST00000540438 RRM1P23921 792 aa18.17■□□□□ 0.5
USP28-208ENST00000540438 BAG6P46379 1132 aa18.17■□□□□ 0.5
USP28-208ENST00000540438 MAGOHP61326 146 aaKnown RBP18.17■□□□□ 0.5
USP28-208ENST00000540438 TNFAIP1Q13829 316 aa18.17■□□□□ 0.5
USP28-208ENST00000540438 ATP13A4Q4VNC1 1196 aa18.17■□□□□ 0.5
USP28-208ENST00000540438 SCARA5Q6ZMJ2 495 aa18.17■□□□□ 0.5
USP28-208ENST00000540438 ARHGAP27Q6ZUM4 889 aa18.17■□□□□ 0.5
USP28-208ENST00000540438 OTUD6AQ7L8S5 288 aa18.17■□□□□ 0.5
USP28-208ENST00000540438 PRELID2Q8N945 189 aa18.17■□□□□ 0.5
USP28-208ENST00000540438 ASAP3Q8TDY4 903 aa18.17■□□□□ 0.5
USP28-208ENST00000540438 CYFIP2Q96F07 1278 aa18.17■□□□□ 0.5
USP28-208ENST00000540438 C11orf70Q9BRQ4 267 aa18.17■□□□□ 0.5
USP28-208ENST00000540438 SLC9A2Q9UBY0 812 aa18.17■□□□□ 0.5
USP28-208ENST00000540438 DAAM1Q9Y4D1 1078 aa18.17■□□□□ 0.5
USP28-208ENST00000540438 PI4K2BG5E9Z4 385 aa18.16■□□□□ 0.5
USP28-208ENST00000540438 ATP4AP20648 1035 aa18.16■□□□□ 0.5
USP28-208ENST00000540438 CCND2P30279 289 aa18.16■□□□□ 0.5
USP28-208ENST00000540438 ALS2CLQ60I27 953 aa18.16■□□□□ 0.5
USP28-208ENST00000540438 FBXL13Q8NEE6 735 aa18.16■□□□□ 0.5
USP28-208ENST00000540438 NT5C1BQ96P26 610 aa18.16■□□□□ 0.5
USP28-208ENST00000540438 CYP39A1Q9NYL5 469 aa18.16■□□□□ 0.5
USP28-208ENST00000540438 HGSO14964 777 aaPredicted RBP18.16■□□□□ 0.5
USP28-208ENST00000540438 TNFSF9P41273 254 aa18.16■□□□□ 0.5
USP28-208ENST00000540438 NCAPG2Q86XI2 1143 aa18.16■□□□□ 0.5
USP28-208ENST00000540438 JAMLQ86YT9 394 aa18.16■□□□□ 0.5
USP28-208ENST00000540438 SEMA4AQ9H3S1 761 aa18.16■□□□□ 0.5
USP28-208ENST00000540438 CYP26B1Q9NR63 512 aa18.16■□□□□ 0.5
USP28-208ENST00000540438 FBXO40Q9UH90 709 aa18.16■□□□□ 0.5
USP28-208ENST00000540438 DBR1Q9UK59 544 aaKnown RBP18.16■□□□□ 0.5
USP28-208ENST00000540438 GOLGA6L10A6NI86 522 aa18.15■□□□□ 0.5
USP28-208ENST00000540438 PDE6CP51160 858 aa18.15■□□□□ 0.5
USP28-208ENST00000540438 HIRAP54198 1017 aaPredicted RBP18.15■□□□□ 0.5
USP28-208ENST00000540438 LY6KQ17RY6 165 aa18.15■□□□□ 0.5
USP28-208ENST00000540438 TMEM270Q6UE05 265 aa18.15■□□□□ 0.5
USP28-208ENST00000540438 CCDC50Q8IVM0 306 aa18.15■□□□□ 0.5
USP28-208ENST00000540438 OR5B17Q8NGF7 314 aa18.15■□□□□ 0.5
USP28-208ENST00000540438 CCDC26Q8TAB7 109 aa18.15■□□□□ 0.5
USP28-208ENST00000540438 ATP8B4Q8TF62 1192 aa18.15■□□□□ 0.5
USP28-208ENST00000540438 FNBP1Q96RU3 617 aa18.15■□□□□ 0.5
USP28-208ENST00000540438 RNF19AQ9NV58 838 aa18.15■□□□□ 0.5
USP28-208ENST00000540438 ZNF646O15015 1829 aaPredicted RBP18.15■□□□□ 0.5
USP28-208ENST00000540438 EIF3HO15372 352 aaKnown RBP eCLIP18.15■□□□□ 0.5
USP28-208ENST00000540438 SLC26A4O43511 780 aa18.15■□□□□ 0.5
USP28-208ENST00000540438 PPFIA4O75335 1185 aa18.15■□□□□ 0.5
USP28-208ENST00000540438 MYZAPP0CAP1 466 aa18.15■□□□□ 0.5
USP28-208ENST00000540438 RPL21P46778 160 aaKnown RBP18.15■□□□□ 0.5
USP28-208ENST00000540438 KRT76Q01546 638 aa18.15■□□□□ 0.5
USP28-208ENST00000540438 KAZNQ674X7 775 aa18.15■□□□□ 0.5
USP28-208ENST00000540438 CCDC137Q6PK04 289 aaKnown RBP18.15■□□□□ 0.5
USP28-208ENST00000540438 CAPN12Q6ZSI9 719 aa18.15■□□□□ 0.5
USP28-208ENST00000540438 SCYL3Q8IZE3 742 aa18.15■□□□□ 0.5
USP28-208ENST00000540438 NSUN6Q8TEA1 469 aaKnown RBP18.15■□□□□ 0.5
USP28-208ENST00000540438 HAUS1Q96CS2 278 aa18.15■□□□□ 0.5
USP28-208ENST00000540438 MRRFQ96E11 262 aaKnown RBP18.15■□□□□ 0.5
USP28-208ENST00000540438 FMO2Q99518 471 aa18.15■□□□□ 0.5
USP28-208ENST00000540438 KCND2Q9NZV8 630 aa18.15■□□□□ 0.5
USP28-208ENST00000540438 LAMA3Q16787 3333 aa18.15■□□□□ 0.5
USP28-208ENST00000540438 CAND2O75155 1236 aa18.15■□□□□ 0.5
USP28-208ENST00000540438 MFAP3P55082 362 aa18.15■□□□□ 0.5
USP28-208ENST00000540438 NCKAP1LP55160 1127 aa18.15■□□□□ 0.5
USP28-208ENST00000540438 CYP24A1Q07973 514 aa18.15■□□□□ 0.5
USP28-208ENST00000540438 GJC2Q5T442 439 aaPredicted RBP18.15■□□□□ 0.5
USP28-208ENST00000540438 FKBP1CQ5VVH2 108 aa18.15■□□□□ 0.5
USP28-208ENST00000540438 DPH6Q7L8W6 267 aa18.15■□□□□ 0.5
USP28-208ENST00000540438 SLC9A9Q8IVB4 645 aa18.15■□□□□ 0.5
USP28-208ENST00000540438 FAM71AQ8IYT1 594 aa18.15■□□□□ 0.5
USP28-208ENST00000540438 ATP6V1G3Q96LB4 118 aa18.15■□□□□ 0.5
USP28-208ENST00000540438 RARAP10276 462 aa18.14■□□□□ 0.49
USP28-208ENST00000540438 MAPTP10636 758 aaKnown RBP18.14■□□□□ 0.49
USP28-208ENST00000540438 TCF4P15884 667 aa18.14■□□□□ 0.49
USP28-208ENST00000540438 IBSPP21815 317 aaPredicted RBP18.14■□□□□ 0.49
USP28-208ENST00000540438 TMC3Q7Z5M5 1100 aa18.14■□□□□ 0.49
USP28-208ENST00000540438 PNMA2Q9UL42 364 aa18.14■□□□□ 0.49
USP28-208ENST00000540438 CCDC172P0C7W6 258 aa18.14■□□□□ 0.49
USP28-208ENST00000540438 LSP1P33241 339 aa18.14■□□□□ 0.49
USP28-208ENST00000540438 GADL1Q6ZQY3 521 aa18.14■□□□□ 0.49
USP28-208ENST00000540438 B4GALNT4Q76KP1 1039 aa18.14■□□□□ 0.49
USP28-208ENST00000540438 WHAMMQ8TF30 809 aa18.14■□□□□ 0.49
USP28-208ENST00000540438 ZSWIM1Q9BR11 485 aa18.14■□□□□ 0.49
USP28-208ENST00000540438 C10orf88Q9H8K7 445 aa18.14■□□□□ 0.49
USP28-208ENST00000540438 CHST7Q9NS84 486 aa18.14■□□□□ 0.49
USP28-208ENST00000540438 BTNL10A8MVZ5 291 aa18.13■□□□□ 0.49
USP28-208ENST00000540438 PIAS1O75925 651 aa18.13■□□□□ 0.49
USP28-208ENST00000540438 ACSL3O95573 720 aa18.13■□□□□ 0.49
USP28-208ENST00000540438 PIK3CAP42336 1068 aa18.13■□□□□ 0.49
USP28-208ENST00000540438 RNF187Q5TA31 235 aaPredicted RBP18.13■□□□□ 0.49
USP28-208ENST00000540438 MICALL1Q8N3F8 863 aa18.13■□□□□ 0.49
USP28-208ENST00000540438 MGARPQ8TDB4 240 aa18.13■□□□□ 0.49
USP28-208ENST00000540438 SELENOSQ9BQE4 189 aa18.13■□□□□ 0.49
USP28-208ENST00000540438 LAMA2P24043 3122 aaKnown RBP18.13■□□□□ 0.49
USP28-208ENST00000540438 PLA2G6O60733 806 aa18.13■□□□□ 0.49
USP28-208ENST00000540438 RTN2O75298 545 aa18.13■□□□□ 0.49
USP28-208ENST00000540438 IVLP07476 585 aa18.13■□□□□ 0.49
USP28-208ENST00000540438 IFNAR2P48551 515 aa18.13■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms