RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 TMCO4Q5TGY1 634 aa13.22□□□□□ -0.29
USP3-203ENST00000538686 AAGABQ6PD74 315 aa13.22□□□□□ -0.29
USP3-203ENST00000538686 ERI1Q8IV48 349 aaKnown RBP13.22□□□□□ -0.29
USP3-203ENST00000538686 C7orf43Q8WVR3 580 aa13.22□□□□□ -0.29
USP3-203ENST00000538686 EFHD2Q96C19 240 aaPredicted RBP13.22□□□□□ -0.29
USP3-203ENST00000538686 HGH1Q9BTY7 390 aa13.22□□□□□ -0.29
USP3-203ENST00000538686 EBF3Q9H4W6 596 aa13.22□□□□□ -0.29
USP3-203ENST00000538686 SNX24Q9Y343 169 aa13.22□□□□□ -0.29
USP3-203ENST00000538686 WASF2Q9Y6W5 498 aa13.22□□□□□ -0.29
USP3-203ENST00000538686 CAPN15O75808 1086 aa13.22□□□□□ -0.29
USP3-203ENST00000538686 HAUS5O94927 633 aa13.22□□□□□ -0.29
USP3-203ENST00000538686 GH1P01241 217 aa13.22□□□□□ -0.29
USP3-203ENST00000538686 FOXN2P32314 431 aa13.22□□□□□ -0.29
USP3-203ENST00000538686 EPS15P42566 896 aa13.22□□□□□ -0.29
USP3-203ENST00000538686 PFKPQ01813 784 aa13.22□□□□□ -0.29
USP3-203ENST00000538686 SPARCL1Q14515 664 aa13.22□□□□□ -0.29
USP3-203ENST00000538686 RRP1BQ14684 758 aaKnown RBP13.22□□□□□ -0.29
USP3-203ENST00000538686 ANKRD20A4Q4UJ75 823 aa13.22□□□□□ -0.29
USP3-203ENST00000538686 CENPPQ6IPU0 288 aa13.22□□□□□ -0.29
USP3-203ENST00000538686 GGT6Q6P531 493 aa13.22□□□□□ -0.29
USP3-203ENST00000538686 CCDC62Q6P9F0 684 aa13.22□□□□□ -0.29
USP3-203ENST00000538686 USP33Q8TEY7 942 aa13.22□□□□□ -0.29
USP3-203ENST00000538686 SCFD1Q8WVM8 642 aa13.22□□□□□ -0.29
USP3-203ENST00000538686 PRPF31Q8WWY3 499 aaKnown RBP13.22□□□□□ -0.29
USP3-203ENST00000538686 MYL10Q9BUA6 226 aa13.22□□□□□ -0.29
USP3-203ENST00000538686 LRRC27Q9C0I9 530 aa13.22□□□□□ -0.29
USP3-203ENST00000538686 TPK1Q9H3S4 243 aa13.22□□□□□ -0.29
USP3-203ENST00000538686 PPP1R1BQ9UD71 204 aaPredicted RBP13.22□□□□□ -0.29
USP3-203ENST00000538686 ASAP1Q9ULH1 1129 aa13.22□□□□□ -0.29
USP3-203ENST00000538686 NBPF26B4DH59 902 aa13.21□□□□□ -0.29
USP3-203ENST00000538686 TLR2O60603 784 aa13.21□□□□□ -0.29
USP3-203ENST00000538686 SPAG7O75391 227 aa13.21□□□□□ -0.29
USP3-203ENST00000538686 OXSR1O95747 527 aaPredicted RBP13.21□□□□□ -0.29
USP3-203ENST00000538686 POLR2EP19388 210 aaKnown RBP13.21□□□□□ -0.29
USP3-203ENST00000538686 PPARGP37231 505 aaPredicted RBP13.21□□□□□ -0.29
USP3-203ENST00000538686 IL15P40933 162 aaPredicted RBP13.21□□□□□ -0.29
USP3-203ENST00000538686 PDK3Q15120 406 aa13.21□□□□□ -0.29
USP3-203ENST00000538686 PDK4Q16654 411 aa13.21□□□□□ -0.29
USP3-203ENST00000538686 LONRF1Q17RB8 773 aa13.21□□□□□ -0.29
USP3-203ENST00000538686 ZNF568Q3ZCX4 644 aa13.21□□□□□ -0.29
USP3-203ENST00000538686 GET4Q7L5D6 327 aaPredicted RBP13.21□□□□□ -0.29
USP3-203ENST00000538686 RIC3Q7Z5B4 369 aa13.21□□□□□ -0.29
USP3-203ENST00000538686 NT5DC3Q86UY8 548 aa13.21□□□□□ -0.29
USP3-203ENST00000538686 CXorf38Q8TB03 319 aa13.21□□□□□ -0.29
USP3-203ENST00000538686 GIPC3Q8TF64 312 aa13.21□□□□□ -0.29
USP3-203ENST00000538686 STARD8Q92502 1023 aa13.21□□□□□ -0.29
USP3-203ENST00000538686 SRPK1Q96SB4 655 aaKnown RBP13.21□□□□□ -0.29
USP3-203ENST00000538686 Q9H521 79 aa13.21□□□□□ -0.29
USP3-203ENST00000538686 MLXIPLQ9NP71 852 aa13.21□□□□□ -0.29
USP3-203ENST00000538686 TBC1D23Q9NUY8 699 aa13.21□□□□□ -0.29
USP3-203ENST00000538686 PCYOX1Q9UHG3 505 aa13.21□□□□□ -0.29
USP3-203ENST00000538686 CCPG1Q9ULG6 757 aa13.21□□□□□ -0.29
USP3-203ENST00000538686 ITM2BQ9Y287 266 aa13.21□□□□□ -0.29
USP3-203ENST00000538686 TRIM17Q9Y577 477 aa13.21□□□□□ -0.29
USP3-203ENST00000538686 FRMPD4Q14CM0 1322 aa13.21□□□□□ -0.29
USP3-203ENST00000538686 CHD1O14646 1710 aa13.21□□□□□ -0.3
USP3-203ENST00000538686 LAMB4A4D0S4 1761 aa13.21□□□□□ -0.3
USP3-203ENST00000538686 DKC1O60832 514 aaKnown RBP eCLIP13.2□□□□□ -0.3
USP3-203ENST00000538686 CDH16O75309 829 aa13.2□□□□□ -0.3
USP3-203ENST00000538686 SMIM18P0DKX4 95 aa13.2□□□□□ -0.3
USP3-203ENST00000538686 VCLP18206 1134 aa13.2□□□□□ -0.3
USP3-203ENST00000538686 NAA20P61599 178 aa13.2□□□□□ -0.3
USP3-203ENST00000538686 LRRC63Q05C16 580 aa13.2□□□□□ -0.3
USP3-203ENST00000538686 PDE4DQ08499 809 aa13.2□□□□□ -0.3
USP3-203ENST00000538686 EPM2AIP1Q7L775 607 aaPredicted RBP13.2□□□□□ -0.3
USP3-203ENST00000538686 LRRC6Q86X45 466 aa13.2□□□□□ -0.3
USP3-203ENST00000538686 ANKK1Q8NFD2 765 aa13.2□□□□□ -0.3
USP3-203ENST00000538686 ART4Q93070 314 aa13.2□□□□□ -0.3
USP3-203ENST00000538686 ANKRD36BP1Q96IX9 119 aa13.2□□□□□ -0.3
USP3-203ENST00000538686 TTC25Q96NG3 672 aa13.2□□□□□ -0.3
USP3-203ENST00000538686 PACSIN1Q9BY11 444 aa13.2□□□□□ -0.3
USP3-203ENST00000538686 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.2□□□□□ -0.38e-7■□□□□ 9.6
USP3-203ENST00000538686 GBA3Q9H227 469 aa13.2□□□□□ -0.3
USP3-203ENST00000538686 ADAMTS1Q9UHI8 967 aa13.2□□□□□ -0.3
USP3-203ENST00000538686 AK5Q9Y6K8 562 aa13.2□□□□□ -0.3
USP3-203ENST00000538686 ATRNO75882 1429 aa13.2□□□□□ -0.3
USP3-203ENST00000538686 BTBD11A6QL63 1104 aa13.2□□□□□ -0.3
USP3-203ENST00000538686 DNAJC6O75061 913 aa13.2□□□□□ -0.3
USP3-203ENST00000538686 GGPS1O95749 300 aa13.2□□□□□ -0.3
USP3-203ENST00000538686 PTPN2P17706 415 aa13.2□□□□□ -0.3
USP3-203ENST00000538686 PGM1P36871 562 aa13.2□□□□□ -0.3
USP3-203ENST00000538686 MPP2Q14168 576 aa13.2□□□□□ -0.3
USP3-203ENST00000538686 IL23RQ5VWK5 629 aa13.2□□□□□ -0.3
USP3-203ENST00000538686 UGT2A3Q6UWM9 527 aa13.2□□□□□ -0.3
USP3-203ENST00000538686 PROSER2Q86WR7 435 aaPredicted RBP13.2□□□□□ -0.3
USP3-203ENST00000538686 CCDC110Q8TBZ0 833 aa13.2□□□□□ -0.3
USP3-203ENST00000538686 NACAP1Q9BZK3 213 aa13.2□□□□□ -0.3
USP3-203ENST00000538686 CYLDQ9NQC7 956 aa13.2□□□□□ -0.3
USP3-203ENST00000538686 A0A088AWK7 358 aa13.19□□□□□ -0.3
USP3-203ENST00000538686 NPHP3-ACAD11A0A0J9YXS1 232 aa13.19□□□□□ -0.3
USP3-203ENST00000538686 FUOMA2VDF0 154 aa13.19□□□□□ -0.3
USP3-203ENST00000538686 FAM205CA6NFA0 338 aa13.19□□□□□ -0.3
USP3-203ENST00000538686 BUD23O43709 281 aaKnown RBP13.19□□□□□ -0.3
USP3-203ENST00000538686 BAIAP3O94812 1187 aa13.19□□□□□ -0.3
USP3-203ENST00000538686 HOXD11P31277 338 aaPredicted RBP13.19□□□□□ -0.3
USP3-203ENST00000538686 RPL21P46778 160 aaKnown RBP13.19□□□□□ -0.3
USP3-203ENST00000538686 CEBPAP49715 358 aaPredicted RBP13.19□□□□□ -0.3
USP3-203ENST00000538686 NUP107P57740 925 aa13.19□□□□□ -0.3
USP3-203ENST00000538686 ACTR3P61158 418 aa13.19□□□□□ -0.3
USP3-203ENST00000538686 AMPD3Q01432 767 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms