RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 DDX47Q9H0S4 455 aaKnown RBP11.25□□□□□ -0.61
CLIP1-209ENST00000537178 MLXIPLQ9NP71 852 aa11.25□□□□□ -0.61
CLIP1-209ENST00000537178 PCDHA6Q9UN73 950 aa11.25□□□□□ -0.61
CLIP1-209ENST00000537178 PCDHA8Q9Y5H6 950 aa11.25□□□□□ -0.61
CLIP1-209ENST00000537178 ANKRD65E5RJM6 399 aa11.24□□□□□ -0.61
CLIP1-209ENST00000537178 KDM1AO60341 852 aa11.24□□□□□ -0.61
CLIP1-209ENST00000537178 WDR47O94967 919 aa11.24□□□□□ -0.61
CLIP1-209ENST00000537178 TAP1Q03518 808 aa11.24□□□□□ -0.61
CLIP1-209ENST00000537178 HIC1Q14526 733 aa11.24□□□□□ -0.61
CLIP1-209ENST00000537178 AIFM3Q96NN9 605 aa11.24□□□□□ -0.61
CLIP1-209ENST00000537178 FAM213AQ9BRX8 229 aa11.24□□□□□ -0.61
CLIP1-209ENST00000537178 SLC13A1Q9BZW2 595 aa11.24□□□□□ -0.61
CLIP1-209ENST00000537178 BLOC1S6Q9UL45 172 aa11.24□□□□□ -0.61
CLIP1-209ENST00000537178 TRAF3IP3Q9Y228 551 aa11.24□□□□□ -0.61
CLIP1-209ENST00000537178 PTPRUQ92729 1446 aa11.24□□□□□ -0.61
CLIP1-209ENST00000537178 ERBB3P21860 1342 aa11.24□□□□□ -0.61
CLIP1-209ENST00000537178 ERVV-1B6SEH8 477 aa11.24□□□□□ -0.61
CLIP1-209ENST00000537178 ZBTB5O15062 677 aa11.24□□□□□ -0.61
CLIP1-209ENST00000537178 RAD17O75943 681 aa11.24□□□□□ -0.61
CLIP1-209ENST00000537178 USP6P35125 1406 aa11.24□□□□□ -0.61
CLIP1-209ENST00000537178 DHX34Q14147 1143 aaKnown RBP11.24□□□□□ -0.61
CLIP1-209ENST00000537178 STAT4Q14765 748 aa11.24□□□□□ -0.61
CLIP1-209ENST00000537178 CAPRIN2Q6IMN6 1127 aaKnown RBP11.24□□□□□ -0.61
CLIP1-209ENST00000537178 ZNF341Q9BYN7 854 aa11.24□□□□□ -0.61
CLIP1-209ENST00000537178 COA1Q9GZY4 146 aa11.24□□□□□ -0.61
CLIP1-209ENST00000537178 ECT2Q9H8V3 914 aa11.24□□□□□ -0.61
CLIP1-209ENST00000537178 AP3B1O00203 1094 aa11.24□□□□□ -0.61
CLIP1-209ENST00000537178 SFNP31947 248 aa11.24□□□□□ -0.61
CLIP1-209ENST00000537178 CIAPIN1Q6FI81 312 aa11.24□□□□□ -0.61
CLIP1-209ENST00000537178 RBM43Q6ZSC3 357 aaKnown RBP11.24□□□□□ -0.61
CLIP1-209ENST00000537178 TAS2R42Q7RTR8 314 aa11.24□□□□□ -0.61
CLIP1-209ENST00000537178 RASSF3Q86WH2 238 aa11.24□□□□□ -0.61
CLIP1-209ENST00000537178 TBC1D19Q8N5T2 526 aa11.24□□□□□ -0.61
CLIP1-209ENST00000537178 ZFATQ9P243 1243 aa11.24□□□□□ -0.61
CLIP1-209ENST00000537178 ATP11BQ9Y2G3 1177 aa11.24□□□□□ -0.61
CLIP1-209ENST00000537178 ANGPT2O15123 496 aa11.24□□□□□ -0.61
CLIP1-209ENST00000537178 SRGAP2O75044 1071 aa11.24□□□□□ -0.61
CLIP1-209ENST00000537178 SUPT3HO75486 399 aa11.24□□□□□ -0.61
CLIP1-209ENST00000537178 GSNP06396 782 aa11.24□□□□□ -0.61
CLIP1-209ENST00000537178 HNRNPCP07910 306 aaKnown RBP eCLIP11.24□□□□□ -0.61
CLIP1-209ENST00000537178 GNA15P30679 374 aa11.24□□□□□ -0.61
CLIP1-209ENST00000537178 VAMP7P51809 220 aa11.24□□□□□ -0.61
CLIP1-209ENST00000537178 GYS2P54840 703 aa11.24□□□□□ -0.61
CLIP1-209ENST00000537178 KNOP1Q1ED39 458 aaKnown RBP11.24□□□□□ -0.61
CLIP1-209ENST00000537178 FAM196AQ6ZSG2 479 aa11.24□□□□□ -0.61
CLIP1-209ENST00000537178 NLRP10Q86W26 655 aa11.24□□□□□ -0.61
CLIP1-209ENST00000537178 HOXC10Q9NYD6 342 aa11.24□□□□□ -0.61
CLIP1-209ENST00000537178 FTLP02792 175 aaPredicted RBP11.23□□□□□ -0.61
CLIP1-209ENST00000537178 AP3M2P53677 418 aa11.23□□□□□ -0.61
CLIP1-209ENST00000537178 CUL3Q13618 768 aa11.23□□□□□ -0.61
CLIP1-209ENST00000537178 ZNF235Q14590 738 aa11.23□□□□□ -0.61
CLIP1-209ENST00000537178 IZUMO3Q5VZ72 239 aa11.23□□□□□ -0.61
CLIP1-209ENST00000537178 PPP1R18Q6NYC8 613 aa11.23□□□□□ -0.61
CLIP1-209ENST00000537178 PARP9Q8IXQ6 854 aa11.23□□□□□ -0.61
CLIP1-209ENST00000537178 URGCPQ8TCY9 931 aa11.23□□□□□ -0.61
CLIP1-209ENST00000537178 NSUN6Q8TEA1 469 aaKnown RBP11.23□□□□□ -0.61
CLIP1-209ENST00000537178 DHX35Q9H5Z1 703 aaKnown RBP11.23□□□□□ -0.61
CLIP1-209ENST00000537178 MRGBPQ9NV56 204 aa11.23□□□□□ -0.61
CLIP1-209ENST00000537178 ASAP1Q9ULH1 1129 aa11.23□□□□□ -0.61
CLIP1-209ENST00000537178 FAM32AQ9Y421 112 aaKnown RBP11.23□□□□□ -0.61
CLIP1-209ENST00000537178 DENND3A2RUS2 1198 aa11.23□□□□□ -0.61
CLIP1-209ENST00000537178 STK25O00506 426 aa11.23□□□□□ -0.61
CLIP1-209ENST00000537178 FAM107AO95990 144 aa11.23□□□□□ -0.61
CLIP1-209ENST00000537178 MYL3P08590 195 aa11.23□□□□□ -0.61
CLIP1-209ENST00000537178 PGM1P36871 562 aa11.23□□□□□ -0.61
CLIP1-209ENST00000537178 ZNF211Q13398 564 aaPredicted RBP11.23□□□□□ -0.61
CLIP1-209ENST00000537178 DRAP1Q14919 205 aaPredicted RBP11.23□□□□□ -0.61
CLIP1-209ENST00000537178 PROSER3Q2NL68 480 aa11.23□□□□□ -0.61
CLIP1-209ENST00000537178 CCDC137Q6PK04 289 aaKnown RBP11.23□□□□□ -0.61
CLIP1-209ENST00000537178 MIGA2Q7L4E1 593 aa11.23□□□□□ -0.61
CLIP1-209ENST00000537178 CDR2LQ86X02 465 aaPredicted RBP11.23□□□□□ -0.61
CLIP1-209ENST00000537178 RAD54LQ92698 747 aa11.23□□□□□ -0.61
CLIP1-209ENST00000537178 OLFML3Q9NRN5 406 aa11.23□□□□□ -0.61
CLIP1-209ENST00000537178 GIMAP4Q9NUV9 329 aa11.23□□□□□ -0.61
CLIP1-209ENST00000537178 CYP2D7A0A087X1C5 515 aa11.23□□□□□ -0.61
CLIP1-209ENST00000537178 ACTN3Q08043 901 aaPredicted RBP11.23□□□□□ -0.61
CLIP1-209ENST00000537178 ERFEQ4G0M1 354 aa11.23□□□□□ -0.61
CLIP1-209ENST00000537178 KHDRBS2Q5VWX1 349 aaKnown RBP11.23□□□□□ -0.61
CLIP1-209ENST00000537178 PI16Q6UXB8 463 aa11.23□□□□□ -0.61
CLIP1-209ENST00000537178 ARMC2Q8NEN0 867 aa11.23□□□□□ -0.61
CLIP1-209ENST00000537178 ASAP3Q8TDY4 903 aa11.23□□□□□ -0.61
CLIP1-209ENST00000537178 RFFLQ8WZ73 363 aa11.23□□□□□ -0.61
CLIP1-209ENST00000537178 ZNF711Q9Y462 761 aa11.23□□□□□ -0.61
CLIP1-209ENST00000537178 STK36Q9NRP7 1315 aa11.23□□□□□ -0.61
CLIP1-209ENST00000537178 GLI3P10071 1580 aa11.23□□□□□ -0.61
CLIP1-209ENST00000537178 ZNF263O14978 683 aa11.23□□□□□ -0.61
CLIP1-209ENST00000537178 PLEKHA8P1O95397 391 aa11.23□□□□□ -0.61
CLIP1-209ENST00000537178 KRT16P08779 473 aa11.23□□□□□ -0.61
CLIP1-209ENST00000537178 HSD17B4P51659 736 aa11.23□□□□□ -0.61
CLIP1-209ENST00000537178 GFPT1Q06210 699 aaPredicted RBP11.23□□□□□ -0.61
CLIP1-209ENST00000537178 DCAF4L1Q3SXM0 396 aa11.23□□□□□ -0.61
CLIP1-209ENST00000537178 PID1Q7Z2X4 250 aa11.23□□□□□ -0.61
CLIP1-209ENST00000537178 RNF135Q8IUD6 432 aa11.23□□□□□ -0.61
CLIP1-209ENST00000537178 MFN1Q8IWA4 741 aa11.23□□□□□ -0.61
CLIP1-209ENST00000537178 SH3TC2Q8TF17 1288 aa11.23□□□□□ -0.61
CLIP1-209ENST00000537178 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.23□□□□□ -0.61
CLIP1-209ENST00000537178 AFG1LQ8WV93 481 aa11.23□□□□□ -0.61
CLIP1-209ENST00000537178 SLC24A3Q9HC58 644 aa11.23□□□□□ -0.61
CLIP1-209ENST00000537178 SELENONQ9NZV5 590 aa11.23□□□□□ -0.61
CLIP1-209ENST00000537178 AFF4Q9UHB7 1163 aaKnown RBP11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms