RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 HSP90AA2PQ14568 343 aaPredicted RBP12.55□□□□□ -0.4
VPS28-214ENST00000531032 LILRA6Q6PI73 481 aa12.55□□□□□ -0.4
VPS28-214ENST00000531032 PALB2Q86YC2 1186 aa12.55□□□□□ -0.4
VPS28-214ENST00000531032 ERMNQ8TAM6 284 aa12.55□□□□□ -0.4
VPS28-214ENST00000531032 RIN2Q8WYP3 895 aaPredicted RBP12.55□□□□□ -0.4
VPS28-214ENST00000531032 BSNDQ8WZ55 320 aa12.55□□□□□ -0.4
VPS28-214ENST00000531032 SMG7Q92540 1137 aaKnown RBP12.55□□□□□ -0.4
VPS28-214ENST00000531032 PAAF1Q9BRP4 392 aa12.55□□□□□ -0.4
VPS28-214ENST00000531032 CCDC113Q9H0I3 377 aa12.55□□□□□ -0.4
VPS28-214ENST00000531032 NT5C3AQ9H0P0 336 aa12.55□□□□□ -0.4
VPS28-214ENST00000531032 C2orf40Q9H1Z8 148 aa12.55□□□□□ -0.4
VPS28-214ENST00000531032 FOXP1Q9H334 677 aaPredicted RBP12.55□□□□□ -0.4
VPS28-214ENST00000531032 CACNG4Q9UBN1 327 aa12.55□□□□□ -0.4
VPS28-214ENST00000531032 ZFHX2Q9C0A1 2572 aaPredicted RBP12.55□□□□□ -0.4
VPS28-214ENST00000531032 PTGESO14684 152 aa12.54□□□□□ -0.4
VPS28-214ENST00000531032 TADA2AO75478 443 aa12.54□□□□□ -0.4
VPS28-214ENST00000531032 KIF4AO95239 1232 aa12.54□□□□□ -0.4
VPS28-214ENST00000531032 PRKCBP05771 671 aa12.54□□□□□ -0.4
VPS28-214ENST00000531032 SPATA31D3P0C874 917 aa12.54□□□□□ -0.4
VPS28-214ENST00000531032 MYBP10242 640 aa12.54□□□□□ -0.4
VPS28-214ENST00000531032 CYP11B2P19099 503 aa12.54□□□□□ -0.4
VPS28-214ENST00000531032 AOC1P19801 751 aa12.54□□□□□ -0.4
VPS28-214ENST00000531032 MUTP22033 750 aa12.54□□□□□ -0.4
VPS28-214ENST00000531032 GBP2P32456 591 aaPredicted RBP12.54□□□□□ -0.4
VPS28-214ENST00000531032 NBL1P41271 181 aa12.54□□□□□ -0.4
VPS28-214ENST00000531032 NAMPTP43490 491 aa12.54□□□□□ -0.4
VPS28-214ENST00000531032 PRPF4BQ13523 1007 aaKnown RBP12.54□□□□□ -0.4
VPS28-214ENST00000531032 ZNF174Q15697 407 aa12.54□□□□□ -0.4
VPS28-214ENST00000531032 NAB2Q15742 525 aa12.54□□□□□ -0.4
VPS28-214ENST00000531032 MAPK6Q16659 721 aa12.54□□□□□ -0.4
VPS28-214ENST00000531032 RTP2Q5QGT7 225 aa12.54□□□□□ -0.4
VPS28-214ENST00000531032 HAUS3Q68CZ6 603 aa12.54□□□□□ -0.4
VPS28-214ENST00000531032 PADI6Q6TGC4 694 aa12.54□□□□□ -0.4
VPS28-214ENST00000531032 SPATA31D4Q6ZUB0 917 aa12.54□□□□□ -0.4
VPS28-214ENST00000531032 FLCNQ8NFG4 579 aa12.54□□□□□ -0.4
VPS28-214ENST00000531032 RABGGTAQ92696 567 aa12.54□□□□□ -0.4
VPS28-214ENST00000531032 C8orf76Q96K31 380 aa12.54□□□□□ -0.4
VPS28-214ENST00000531032 MYADMQ96S97 322 aa12.54□□□□□ -0.4
VPS28-214ENST00000531032 LLPHQ9BRT6 129 aaKnown RBP12.54□□□□□ -0.4
VPS28-214ENST00000531032 PRKD2Q9BZL6 878 aa12.54□□□□□ -0.4
VPS28-214ENST00000531032 SNTG2Q9NY99 539 aa12.54□□□□□ -0.4
VPS28-214ENST00000531032 DAXXQ9UER7 740 aaPredicted RBP12.54□□□□□ -0.4
VPS28-214ENST00000531032 LIMCH1Q9UPQ0 1083 aa12.54□□□□□ -0.4
VPS28-214ENST00000531032 CFAP54Q96N23 3096 aa12.54□□□□□ -0.4
VPS28-214ENST00000531032 DMDP11532 3685 aa12.53□□□□□ -0.4
VPS28-214ENST00000531032 ARHGEF35A5YM69 484 aa12.53□□□□□ -0.4
VPS28-214ENST00000531032 CASTOR2A6NHX0 329 aa12.53□□□□□ -0.4
VPS28-214ENST00000531032 ACKR2O00590 384 aa12.53□□□□□ -0.4
VPS28-214ENST00000531032 NARSO43776 548 aaKnown RBP12.53□□□□□ -0.4
VPS28-214ENST00000531032 ZMYND10O75800 440 aa12.53□□□□□ -0.4
VPS28-214ENST00000531032 RECQL4O94761 1208 aa12.53□□□□□ -0.4
VPS28-214ENST00000531032 SEC24BO95487 1268 aa12.53□□□□□ -0.4
VPS28-214ENST00000531032 EDN1P05305 212 aa12.53□□□□□ -0.4
VPS28-214ENST00000531032 THP07101 528 aa12.53□□□□□ -0.4
VPS28-214ENST00000531032 RPL17P18621 184 aaKnown RBP12.53□□□□□ -0.4
VPS28-214ENST00000531032 PPP2R5AQ15172 486 aa12.53□□□□□ -0.4
VPS28-214ENST00000531032 PRSS55Q6UWB4 352 aaPredicted RBP12.53□□□□□ -0.4
VPS28-214ENST00000531032 GLYCTKQ8IVS8 523 aa12.53□□□□□ -0.4
VPS28-214ENST00000531032 CCDC83Q8IWF9 413 aa12.53□□□□□ -0.4
VPS28-214ENST00000531032 SIX5Q8N196 739 aa12.53□□□□□ -0.4
VPS28-214ENST00000531032 DEPTORQ8TB45 409 aa12.53□□□□□ -0.4
VPS28-214ENST00000531032 RSAD2Q8WXG1 361 aa12.53□□□□□ -0.4
VPS28-214ENST00000531032 PIK3R5Q8WYR1 880 aa12.53□□□□□ -0.4
VPS28-214ENST00000531032 NXPE3Q969Y0 559 aa12.53□□□□□ -0.4
VPS28-214ENST00000531032 ADPGKQ9BRR6 497 aa12.53□□□□□ -0.4
VPS28-214ENST00000531032 TTPALQ9BTX7 342 aa12.53□□□□□ -0.4
VPS28-214ENST00000531032 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP12.53□□□□□ -0.42e-7■■■■□ 26
VPS28-214ENST00000531032 WNT16Q9UBV4 365 aa12.53□□□□□ -0.4
VPS28-214ENST00000531032 FBXW11Q9UKB1 542 aa12.53□□□□□ -0.4
VPS28-214ENST00000531032 FBXL21Q9UKT6 434 aa12.53□□□□□ -0.4
VPS28-214ENST00000531032 VPS13AQ96RL7 3174 aa12.53□□□□□ -0.4
VPS28-214ENST00000531032 VWA8A3KMH1 1905 aa12.52□□□□□ -0.4
VPS28-214ENST00000531032 PI15O43692 258 aa12.52□□□□□ -0.41
VPS28-214ENST00000531032 LAMP2P13473 410 aa12.52□□□□□ -0.41
VPS28-214ENST00000531032 TRAPPC10P48553 1259 aa12.52□□□□□ -0.41
VPS28-214ENST00000531032 RBM25P49756 843 aaKnown RBP12.52□□□□□ -0.41
VPS28-214ENST00000531032 FXR2P51116 673 aaKnown RBP eCLIP12.52□□□□□ -0.41
VPS28-214ENST00000531032 ECM1Q16610 540 aa12.52□□□□□ -0.41
VPS28-214ENST00000531032 DCAF4L1Q3SXM0 396 aa12.52□□□□□ -0.41
VPS28-214ENST00000531032 TTC38Q5R3I4 469 aa12.52□□□□□ -0.41
VPS28-214ENST00000531032 NOSTRINQ8IVI9 506 aa12.52□□□□□ -0.41
VPS28-214ENST00000531032 CCDC105Q8IYK2 499 aa12.52□□□□□ -0.41
VPS28-214ENST00000531032 SLC44A3Q8N4M1 653 aa12.52□□□□□ -0.41
VPS28-214ENST00000531032 C4orf32Q8N8J7 132 aa12.52□□□□□ -0.41
VPS28-214ENST00000531032 FBXO18Q8NFZ0 1043 aa12.52□□□□□ -0.41
VPS28-214ENST00000531032 LNX1Q8TBB1 728 aaPredicted RBP12.52□□□□□ -0.41
VPS28-214ENST00000531032 HASPINQ8TF76 798 aa12.52□□□□□ -0.41
VPS28-214ENST00000531032 RTP3Q9BQQ7 232 aa12.52□□□□□ -0.41
VPS28-214ENST00000531032 CLSTN3Q9BQT9 956 aa12.52□□□□□ -0.41
VPS28-214ENST00000531032 CXCL16Q9H2A7 254 aa12.52□□□□□ -0.41
VPS28-214ENST00000531032 PIDD1Q9HB75 910 aa12.52□□□□□ -0.41
VPS28-214ENST00000531032 USP20Q9Y2K6 914 aa12.52□□□□□ -0.41
VPS28-214ENST00000531032 KRBA1A5PL33 1030 aa12.51□□□□□ -0.41
VPS28-214ENST00000531032 ANHXE9PGG2 379 aa12.51□□□□□ -0.41
VPS28-214ENST00000531032 TMEM189-UBE2V1I3L0A0 370 aa12.51□□□□□ -0.41
VPS28-214ENST00000531032 CFHP08603 1231 aa12.51□□□□□ -0.41
VPS28-214ENST00000531032 HNRNPA1P09651 372 aaKnown RBP eCLIP12.51□□□□□ -0.41
VPS28-214ENST00000531032 SRFP11831 508 aa12.51□□□□□ -0.41
VPS28-214ENST00000531032 HOXA9P31269 272 aa12.51□□□□□ -0.41
VPS28-214ENST00000531032 EFNA5P52803 228 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms