RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 KIAA0319LQ8IZA0 1049 aa23.01■■□□□ 1.27
VPS28-212ENST00000530836 ACO2Q99798 780 aaKnown RBP23.01■■□□□ 1.27
VPS28-212ENST00000530836 INO80BQ9C086 356 aaPredicted RBP23.01■■□□□ 1.27
VPS28-212ENST00000530836 HIPK3Q9H422 1215 aa23.01■■□□□ 1.27
VPS28-212ENST00000530836 GOLGA8IPA6NC78 632 aa23■■□□□ 1.27
VPS28-212ENST00000530836 GOLGA8JA6NMD2 632 aa23■■□□□ 1.27
VPS28-212ENST00000530836 TIMP1P01033 207 aa23■■□□□ 1.27
VPS28-212ENST00000530836 SYN1P17600 705 aa23■■□□□ 1.27
VPS28-212ENST00000530836 ITGB8P26012 769 aa23■■□□□ 1.27
VPS28-212ENST00000530836 HNRNPH3P31942 346 aaKnown RBP23■■□□□ 1.27
VPS28-212ENST00000530836 MBTD1Q05BQ5 628 aa23■■□□□ 1.27
VPS28-212ENST00000530836 CYP24A1Q07973 514 aa23■■□□□ 1.27
VPS28-212ENST00000530836 BFSP2Q13515 415 aa23■■□□□ 1.27
VPS28-212ENST00000530836 NOLC1Q14978 699 aaKnown RBP eCLIP23■■□□□ 1.27
VPS28-212ENST00000530836 PCBP1Q15365 356 aaKnown RBP eCLIP23■■□□□ 1.27
VPS28-212ENST00000530836 TRIM71Q2Q1W2 868 aaKnown RBP23■■□□□ 1.27
VPS28-212ENST00000530836 TSHZ1Q6ZSZ6 1077 aa23■■□□□ 1.27
VPS28-212ENST00000530836 SRGAP1Q7Z6B7 1085 aa23■■□□□ 1.27
VPS28-212ENST00000530836 CAGE1Q8TC20 777 aa23■■□□□ 1.27
VPS28-212ENST00000530836 PARD3BQ8TEW8 1205 aa23■■□□□ 1.27
VPS28-212ENST00000530836 WNT8BQ93098 351 aa23■■□□□ 1.27
VPS28-212ENST00000530836 ZBTB10Q96DT7 871 aa23■■□□□ 1.27
VPS28-212ENST00000530836 IFT122Q9HBG6 1241 aa23■■□□□ 1.27
VPS28-212ENST00000530836 AGPAT5Q9NUQ2 364 aa23■■□□□ 1.27
VPS28-212ENST00000530836 SPTLC3Q9NUV7 552 aa23■■□□□ 1.27
VPS28-212ENST00000530836 GCNT4Q9P109 453 aa23■■□□□ 1.27
VPS28-212ENST00000530836 KAT6AQ92794 2004 aa23■■□□□ 1.27
VPS28-212ENST00000530836 RNF225M0QZC1 329 aaPredicted RBP23■■□□□ 1.27
VPS28-212ENST00000530836 RAG1P15918 1043 aa23■■□□□ 1.27
VPS28-212ENST00000530836 PON1P27169 355 aa23■■□□□ 1.27
VPS28-212ENST00000530836 MATR3P43243 847 aaKnown RBP eCLIP23■■□□□ 1.27
VPS28-212ENST00000530836 CDK17Q00537 523 aa23■■□□□ 1.27
VPS28-212ENST00000530836 MYL7Q01449 175 aa23■■□□□ 1.27
VPS28-212ENST00000530836 PRPF4BQ13523 1007 aaKnown RBP23■■□□□ 1.27
VPS28-212ENST00000530836 MEA1Q16626 185 aa23■■□□□ 1.27
VPS28-212ENST00000530836 RUFY4Q6ZNE9 571 aa23■■□□□ 1.27
VPS28-212ENST00000530836 SYN2Q92777 582 aaPredicted RBP23■■□□□ 1.27
VPS28-212ENST00000530836 FAM213AQ9BRX8 229 aa23■■□□□ 1.27
VPS28-212ENST00000530836 CRACR2AQ9BSW2 395 aa23■■□□□ 1.27
VPS28-212ENST00000530836 MSTO1Q9BUK6 570 aa23■■□□□ 1.27
VPS28-212ENST00000530836 MYO6Q9UM54 1294 aa23■■□□□ 1.27
VPS28-212ENST00000530836 PLAGL2Q9UPG8 496 aa23■■□□□ 1.27
VPS28-212ENST00000530836 PITPNM1O00562 1244 aa22.99■■□□□ 1.27
VPS28-212ENST00000530836 ADRB2P07550 413 aa22.99■■□□□ 1.27
VPS28-212ENST00000530836 TRIM49P0CI25 452 aa22.99■■□□□ 1.27
VPS28-212ENST00000530836 TRIM49CP0CI26 452 aa22.99■■□□□ 1.27
VPS28-212ENST00000530836 GPC3P51654 580 aa22.99■■□□□ 1.27
VPS28-212ENST00000530836 MCL1Q07820 350 aa22.99■■□□□ 1.27
VPS28-212ENST00000530836 NLRP7Q8WX94 980 aa22.99■■□□□ 1.27
VPS28-212ENST00000530836 ANKFY1Q9P2R3 1169 aa22.99■■□□□ 1.27
VPS28-212ENST00000530836 TNFSF13BQ9Y275 285 aa22.99■■□□□ 1.27
VPS28-212ENST00000530836 A0A087WZ62 844 aa22.98■■□□□ 1.27
VPS28-212ENST00000530836 H0YGN5 161 aa22.98■■□□□ 1.27
VPS28-212ENST00000530836 NOL4O94818 638 aa22.98■■□□□ 1.27
VPS28-212ENST00000530836 RFX1P22670 979 aa22.98■■□□□ 1.27
VPS28-212ENST00000530836 ATF7IP2Q5U623 682 aa22.98■■□□□ 1.27
VPS28-212ENST00000530836 RPAINQ86UA6 219 aa22.98■■□□□ 1.27
VPS28-212ENST00000530836 NME8Q8N427 588 aa22.98■■□□□ 1.27
VPS28-212ENST00000530836 FDXACB1Q9BRP7 624 aaPredicted RBP22.98■■□□□ 1.27
VPS28-212ENST00000530836 TCHPQ9BT92 498 aa22.98■■□□□ 1.27
VPS28-212ENST00000530836 PPP1R12CQ9BZL4 782 aa22.98■■□□□ 1.27
VPS28-212ENST00000530836 EVPLQ92817 2033 aa22.98■■□□□ 1.27
VPS28-212ENST00000530836 UMODL1Q5DID0 1318 aa22.97■■□□□ 1.27
VPS28-212ENST00000530836 VTNP04004 478 aa22.97■■□□□ 1.27
VPS28-212ENST00000530836 RPLP2P05387 115 aaKnown RBP22.97■■□□□ 1.27
VPS28-212ENST00000530836 CKBP12277 381 aa22.97■■□□□ 1.27
VPS28-212ENST00000530836 PROZP22891 400 aa22.97■■□□□ 1.27
VPS28-212ENST00000530836 CYP2C18P33260 490 aa22.97■■□□□ 1.27
VPS28-212ENST00000530836 CLCN1P35523 988 aa22.97■■□□□ 1.27
VPS28-212ENST00000530836 THPOP40225 353 aa22.97■■□□□ 1.27
VPS28-212ENST00000530836 PSMD6Q15008 389 aa22.97■■□□□ 1.27
VPS28-212ENST00000530836 CBWD6Q4V339 395 aa22.97■■□□□ 1.27
VPS28-212ENST00000530836 CBWD3Q5JTY5 395 aa22.97■■□□□ 1.27
VPS28-212ENST00000530836 CBWD5Q5RIA9 395 aa22.97■■□□□ 1.27
VPS28-212ENST00000530836 KLHDC7AQ5VTJ3 777 aa22.97■■□□□ 1.27
VPS28-212ENST00000530836 MPZL3Q6UWV2 235 aa22.97■■□□□ 1.27
VPS28-212ENST00000530836 FMNL3Q8IVF7 1028 aa22.97■■□□□ 1.27
VPS28-212ENST00000530836 BAP1Q92560 729 aa22.97■■□□□ 1.27
VPS28-212ENST00000530836 SCLT1Q96NL6 688 aa22.97■■□□□ 1.27
VPS28-212ENST00000530836 GANQ9H2C0 597 aa22.97■■□□□ 1.27
VPS28-212ENST00000530836 EPHB6O15197 1021 aa22.97■■□□□ 1.27
VPS28-212ENST00000530836 OGTO15294 1046 aa22.97■■□□□ 1.27
VPS28-212ENST00000530836 ZSCAN12O43309 604 aa22.97■■□□□ 1.27
VPS28-212ENST00000530836 CAND2O75155 1236 aa22.97■■□□□ 1.27
VPS28-212ENST00000530836 SLC9A1P19634 815 aa22.97■■□□□ 1.27
VPS28-212ENST00000530836 MXI1P50539 228 aa22.97■■□□□ 1.27
VPS28-212ENST00000530836 NLRP11P59045 1033 aaKnown RBP22.97■■□□□ 1.27
VPS28-212ENST00000530836 POLR2FP61218 127 aaKnown RBP22.97■■□□□ 1.27
VPS28-212ENST00000530836 DLG4P78352 724 aa22.97■■□□□ 1.27
VPS28-212ENST00000530836 CLDN10P78369 228 aa22.97■■□□□ 1.27
VPS28-212ENST00000530836 KRT39Q6A163 491 aa22.97■■□□□ 1.27
VPS28-212ENST00000530836 TRIM65Q6PJ69 517 aa22.97■■□□□ 1.27
VPS28-212ENST00000530836 RRAGAQ7L523 313 aa22.97■■□□□ 1.27
VPS28-212ENST00000530836 ZSWIM2Q8NEG5 633 aa22.97■■□□□ 1.27
VPS28-212ENST00000530836 DNAJB3Q8WWF6 145 aa22.97■■□□□ 1.27
VPS28-212ENST00000530836 ZBTB45Q96K62 511 aaPredicted RBP22.97■■□□□ 1.27
VPS28-212ENST00000530836 GCOM2Q9BZD3 368 aaPredicted RBP22.97■■□□□ 1.27
VPS28-212ENST00000530836 TMEM8AQ9HCN3 771 aa22.97■■□□□ 1.27
VPS28-212ENST00000530836 PTPRHQ9HD43 1115 aa22.97■■□□□ 1.27
VPS28-212ENST00000530836 PCDH10Q9P2E7 1040 aa22.97■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms