RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 GUCY1A2P33402 732 aa6.29□□□□□ -1.4
CD44-223ENST00000526553 PTPN7P35236 360 aa6.29□□□□□ -1.4
CD44-223ENST00000526553 PER3P56645 1201 aa6.29□□□□□ -1.4
CD44-223ENST00000526553 ACAP2Q15057 778 aa6.29□□□□□ -1.4
CD44-223ENST00000526553 BRDTQ58F21 947 aaPredicted RBP6.29□□□□□ -1.4
CD44-223ENST00000526553 XYLT1Q86Y38 959 aa6.29□□□□□ -1.4
CD44-223ENST00000526553 REPS2Q8NFH8 660 aa6.29□□□□□ -1.4
CD44-223ENST00000526553 CASKIN2Q8WXE0 1202 aa6.29□□□□□ -1.4
CD44-223ENST00000526553 PGBD4Q96DM1 585 aa6.29□□□□□ -1.4
CD44-223ENST00000526553 CYFIP2Q96F07 1278 aa6.29□□□□□ -1.4
CD44-223ENST00000526553 KCNH6Q9H252 994 aa6.29□□□□□ -1.4
CD44-223ENST00000526553 TYW1Q9NV66 732 aaKnown RBP6.29□□□□□ -1.4
CD44-223ENST00000526553 SAP30BPQ9UHR5 308 aaKnown RBP6.29□□□□□ -1.4
CD44-223ENST00000526553 ATRNL1Q5VV63 1379 aa6.29□□□□□ -1.4
CD44-223ENST00000526553 TBKBP1A7MCY6 615 aa6.28□□□□□ -1.4
CD44-223ENST00000526553 TRIM24O15164 1050 aa6.28□□□□□ -1.4
CD44-223ENST00000526553 XPOTO43592 962 aaKnown RBP6.28□□□□□ -1.4
CD44-223ENST00000526553 AMHP03971 560 aa6.28□□□□□ -1.4
CD44-223ENST00000526553 IL2RBP14784 551 aa6.28□□□□□ -1.4
CD44-223ENST00000526553 ALOX15P16050 662 aaPredicted RBP6.28□□□□□ -1.4
CD44-223ENST00000526553 SLC6A9P48067 706 aa6.28□□□□□ -1.4
CD44-223ENST00000526553 SLC16A1P53985 500 aa6.28□□□□□ -1.4
CD44-223ENST00000526553 ANAPC15P60006 121 aa6.28□□□□□ -1.4
CD44-223ENST00000526553 PCBP2Q15366 365 aaKnown RBP eCLIP6.28□□□□□ -1.4
CD44-223ENST00000526553 PTPN21Q16825 1174 aa6.28□□□□□ -1.4
CD44-223ENST00000526553 BMT2Q1RMZ1 405 aa6.28□□□□□ -1.4
CD44-223ENST00000526553 ANKS6Q68DC2 871 aa6.28□□□□□ -1.4
CD44-223ENST00000526553 OR2I1PQ8NGU4 316 aa6.28□□□□□ -1.4
CD44-223ENST00000526553 NRG4Q8WWG1 115 aa6.28□□□□□ -1.4
CD44-223ENST00000526553 TEKT5Q96M29 485 aa6.28□□□□□ -1.4
CD44-223ENST00000526553 PLEKHG4BQ96PX9 1271 aa6.28□□□□□ -1.4
CD44-223ENST00000526553 SENP6Q9GZR1 1112 aaPredicted RBP6.28□□□□□ -1.4
CD44-223ENST00000526553 MANSC1Q9H8J5 431 aa6.28□□□□□ -1.4
CD44-223ENST00000526553 MOCS1Q9NZB8 636 aa6.28□□□□□ -1.4
CD44-223ENST00000526553 SIK3Q9Y2K2 1263 aa6.28□□□□□ -1.4
CD44-223ENST00000526553 CXorf49A8MYA2 514 aaPredicted RBP6.27□□□□□ -1.41
CD44-223ENST00000526553 SNRPA1P09661 255 aaKnown RBP6.27□□□□□ -1.41
CD44-223ENST00000526553 C6P13671 934 aa6.27□□□□□ -1.41
CD44-223ENST00000526553 MGAT1P26572 445 aa6.27□□□□□ -1.41
CD44-223ENST00000526553 ZXDAP98168 799 aa6.27□□□□□ -1.41
CD44-223ENST00000526553 EXOSC10Q01780 885 aaKnown RBP6.27□□□□□ -1.41
CD44-223ENST00000526553 TUBA3CQ13748 450 aa6.27□□□□□ -1.41
CD44-223ENST00000526553 RABL3Q5HYI8 236 aa6.27□□□□□ -1.41
CD44-223ENST00000526553 TUBA3EQ6PEY2 450 aa6.27□□□□□ -1.41
CD44-223ENST00000526553 PNMA8AQ86V59 439 aaPredicted RBP6.27□□□□□ -1.41
CD44-223ENST00000526553 PPM1NQ8N819 430 aa6.27□□□□□ -1.41
CD44-223ENST00000526553 ZFP28Q8NHY6 868 aa6.27□□□□□ -1.41
CD44-223ENST00000526553 TFAP2CQ92754 450 aa6.27□□□□□ -1.41
CD44-223ENST00000526553 SMAD5Q99717 465 aaKnown RBP6.27□□□□□ -1.41
CD44-223ENST00000526553 C7orf25Q9BPX7 421 aa6.27□□□□□ -1.41
CD44-223ENST00000526553 NDC1Q9BTX1 674 aa6.27□□□□□ -1.41
CD44-223ENST00000526553 TMEM140Q9NV12 185 aa6.27□□□□□ -1.41
CD44-223ENST00000526553 TEX33O43247 280 aa6.26□□□□□ -1.41
CD44-223ENST00000526553 CLRN1P58418 232 aa6.26□□□□□ -1.41
CD44-223ENST00000526553 DGCR2P98153 550 aa6.26□□□□□ -1.41
CD44-223ENST00000526553 CSRP2Q16527 193 aa6.26□□□□□ -1.41
CD44-223ENST00000526553 LSM12Q3MHD2 195 aaKnown RBP6.26□□□□□ -1.41
CD44-223ENST00000526553 RRP12Q5JTH9 1297 aaKnown RBP6.26□□□□□ -1.41
CD44-223ENST00000526553 EFCAB2Q5VUJ9 269 aa6.26□□□□□ -1.41
CD44-223ENST00000526553 EFCAB12Q6NXP0 572 aa6.26□□□□□ -1.41
CD44-223ENST00000526553 MIGA2Q7L4E1 593 aa6.26□□□□□ -1.41
CD44-223ENST00000526553 Q8N1X5 172 aa6.26□□□□□ -1.41
CD44-223ENST00000526553 OR10H5Q8NGA6 315 aa6.26□□□□□ -1.41
CD44-223ENST00000526553 ZNF341Q9BYN7 854 aa6.26□□□□□ -1.41
CD44-223ENST00000526553 CSRNP2Q9H175 543 aa6.26□□□□□ -1.41
CD44-223ENST00000526553 SPON1Q9HCB6 807 aa6.26□□□□□ -1.41
CD44-223ENST00000526553 AJAP1Q9UKB5 411 aaPredicted RBP6.26□□□□□ -1.41
CD44-223ENST00000526553 WNT10BO00744 389 aa6.25□□□□□ -1.41
CD44-223ENST00000526553 GPR32O75388 356 aa6.25□□□□□ -1.41
CD44-223ENST00000526553 RECQL4O94761 1208 aa6.25□□□□□ -1.41
CD44-223ENST00000526553 IGBP1P78318 339 aa6.25□□□□□ -1.41
CD44-223ENST00000526553 SLC25A3Q00325 362 aa6.25□□□□□ -1.41
CD44-223ENST00000526553 AFMIDQ63HM1 303 aa6.25□□□□□ -1.41
CD44-223ENST00000526553 OTUD7BQ6GQQ9 843 aa6.25□□□□□ -1.41
CD44-223ENST00000526553 DRC7Q8IY82 874 aa6.25□□□□□ -1.41
CD44-223ENST00000526553 FBXO18Q8NFZ0 1043 aa6.25□□□□□ -1.41
CD44-223ENST00000526553 SLC35B2Q8TB61 432 aa6.25□□□□□ -1.41
CD44-223ENST00000526553 DCLRE1CQ96SD1 692 aaKnown RBP6.25□□□□□ -1.41
CD44-223ENST00000526553 LDAHQ9H6V9 325 aa6.25□□□□□ -1.41
CD44-223ENST00000526553 INTUQ9ULD6 942 aa6.25□□□□□ -1.41
CD44-223ENST00000526553 SORCS3Q9UPU3 1222 aa6.25□□□□□ -1.41
CD44-223ENST00000526553 DIRC3C9JPN6 131 aa6.24□□□□□ -1.41
CD44-223ENST00000526553 FZD7O75084 574 aa6.24□□□□□ -1.41
CD44-223ENST00000526553 RAP2AP10114 183 aa6.24□□□□□ -1.41
CD44-223ENST00000526553 CCND1P24385 295 aa6.24□□□□□ -1.41
CD44-223ENST00000526553 APOBEC3AP31941 199 aaPredicted RBP6.24□□□□□ -1.41
CD44-223ENST00000526553 RECQLP46063 649 aaPredicted RBP6.24□□□□□ -1.41
CD44-223ENST00000526553 ALDH1A3P47895 512 aa6.24□□□□□ -1.41
CD44-223ENST00000526553 ADKP55263 362 aaKnown RBP6.24□□□□□ -1.41
CD44-223ENST00000526553 MTM1Q13496 603 aa6.24□□□□□ -1.41
CD44-223ENST00000526553 TMEM240Q5SV17 173 aa6.24□□□□□ -1.41
CD44-223ENST00000526553 ATXN7L2Q5T6C5 722 aaPredicted RBP6.24□□□□□ -1.41
CD44-223ENST00000526553 SYT12Q8IV01 421 aa6.24□□□□□ -1.41
CD44-223ENST00000526553 DPF2Q92785 391 aa6.24□□□□□ -1.41
CD44-223ENST00000526553 HDAC10Q969S8 669 aa6.24□□□□□ -1.41
CD44-223ENST00000526553 CHMP4CQ96CF2 233 aa6.24□□□□□ -1.41
CD44-223ENST00000526553 MRI1Q9BV20 369 aa6.24□□□□□ -1.41
CD44-223ENST00000526553 FAM30AQ9NZY2 134 aa6.24□□□□□ -1.41
CD44-223ENST00000526553 EIF2B4Q9UI10 523 aaKnown RBP6.24□□□□□ -1.41
CD44-223ENST00000526553 IPPQ9Y573 584 aa6.24□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms