RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 MTMR9Q96QG7 549 aa15.87■□□□□ 0.13
CPSF1-201ENST00000526271 RTP3Q9BQQ7 232 aa15.87■□□□□ 0.13
CPSF1-201ENST00000526271 CLSTN3Q9BQT9 956 aa15.87■□□□□ 0.13
CPSF1-201ENST00000526271 NFKBIZQ9BYH8 718 aa15.87■□□□□ 0.13
CPSF1-201ENST00000526271 PRKD2Q9BZL6 878 aa15.87■□□□□ 0.13
CPSF1-201ENST00000526271 FOXQ1Q9C009 403 aa15.87■□□□□ 0.13
CPSF1-201ENST00000526271 TMEM60Q9H2L4 133 aa15.87■□□□□ 0.13
CPSF1-201ENST00000526271 FNIP2Q9P278 1114 aa15.87■□□□□ 0.13
CPSF1-201ENST00000526271 STK39Q9UEW8 545 aa15.87■□□□□ 0.13
CPSF1-201ENST00000526271 NUMBLQ9Y6R0 609 aa15.87■□□□□ 0.13
CPSF1-201ENST00000526271 SHISA7A6NL88 538 aa15.86■□□□□ 0.13
CPSF1-201ENST00000526271 EPB41L2O43491 1005 aaKnown RBP15.86■□□□□ 0.13
CPSF1-201ENST00000526271 DKC1O60832 514 aaKnown RBP eCLIP15.86■□□□□ 0.13
CPSF1-201ENST00000526271 KIF4AO95239 1232 aa15.86■□□□□ 0.13
CPSF1-201ENST00000526271 RSPO2Q6UXX9 243 aaPredicted RBP15.86■□□□□ 0.13
CPSF1-201ENST00000526271 GET4Q7L5D6 327 aaPredicted RBP15.86■□□□□ 0.13
CPSF1-201ENST00000526271 LNX1Q8TBB1 728 aaPredicted RBP15.86■□□□□ 0.13
CPSF1-201ENST00000526271 HASPINQ8TF76 798 aa15.86■□□□□ 0.13
CPSF1-201ENST00000526271 HDAC7Q8WUI4 952 aa15.86■□□□□ 0.13
CPSF1-201ENST00000526271 POLR3FQ9H1D9 316 aaPredicted RBP15.86■□□□□ 0.13
CPSF1-201ENST00000526271 UBN1Q9NPG3 1134 aa15.86■□□□□ 0.13
CPSF1-201ENST00000526271 FBXW11Q9UKB1 542 aa15.86■□□□□ 0.13
CPSF1-201ENST00000526271 ADAM28Q9UKQ2 775 aa15.86■□□□□ 0.13
CPSF1-201ENST00000526271 COL4A2P08572 1712 aa15.85■□□□□ 0.13
CPSF1-201ENST00000526271 SPDYE4A6NLX3 237 aa15.85■□□□□ 0.13
CPSF1-201ENST00000526271 NRG2O14511 850 aaPredicted RBP15.85■□□□□ 0.13
CPSF1-201ENST00000526271 ZMYND10O75800 440 aa15.85■□□□□ 0.13
CPSF1-201ENST00000526271 GRIK3Q13003 919 aa15.85■□□□□ 0.13
CPSF1-201ENST00000526271 MXD4Q14582 209 aaPredicted RBP15.85■□□□□ 0.13
CPSF1-201ENST00000526271 EEF1DP3Q658K8 133 aa15.85■□□□□ 0.13
CPSF1-201ENST00000526271 PARM1Q6UWI2 310 aa15.85■□□□□ 0.13
CPSF1-201ENST00000526271 CYP26C1Q6V0L0 522 aa15.85■□□□□ 0.13
CPSF1-201ENST00000526271 OTUD6AQ7L8S5 288 aa15.85■□□□□ 0.13
CPSF1-201ENST00000526271 GPR65Q8IYL9 337 aa15.85■□□□□ 0.13
CPSF1-201ENST00000526271 NECAB1Q8N987 351 aa15.85■□□□□ 0.13
CPSF1-201ENST00000526271 RMDN1Q96DB5 314 aa15.85■□□□□ 0.13
CPSF1-201ENST00000526271 FZD8Q9H461 694 aa15.85■□□□□ 0.13
CPSF1-201ENST00000526271 PLEKHA4Q9H4M7 779 aa15.85■□□□□ 0.13
CPSF1-201ENST00000526271 SLC2A4RGQ9NR83 387 aa15.85■□□□□ 0.13
CPSF1-201ENST00000526271 ANKEF1Q9NU02 776 aa15.85■□□□□ 0.13
CPSF1-201ENST00000526271 ZDHHC7Q9NXF8 308 aa15.85■□□□□ 0.13
CPSF1-201ENST00000526271 ORC3Q9UBD5 711 aaPredicted RBP15.85■□□□□ 0.13
CPSF1-201ENST00000526271 CASTOR2A6NHX0 329 aa15.84■□□□□ 0.13
CPSF1-201ENST00000526271 BTBD18B2RXH4 712 aa15.84■□□□□ 0.13
CPSF1-201ENST00000526271 MED24O75448 989 aa15.84■□□□□ 0.13
CPSF1-201ENST00000526271 DGAT1O75907 488 aa15.84■□□□□ 0.13
CPSF1-201ENST00000526271 C1RP00736 705 aa15.84■□□□□ 0.13
CPSF1-201ENST00000526271 GPC5P78333 572 aa15.84■□□□□ 0.13
CPSF1-201ENST00000526271 PCBP1Q15365 356 aaKnown RBP eCLIP15.84■□□□□ 0.13
CPSF1-201ENST00000526271 ME3Q16798 604 aa15.84■□□□□ 0.13
CPSF1-201ENST00000526271 USP41Q3LFD5 358 aa15.84■□□□□ 0.13
CPSF1-201ENST00000526271 SPECC1Q5M775 1068 aa15.84■□□□□ 0.13
CPSF1-201ENST00000526271 CDCA2Q69YH5 1023 aaPredicted RBP15.84■□□□□ 0.13
CPSF1-201ENST00000526271 PHLDB3Q6NSJ2 640 aa15.84■□□□□ 0.13
CPSF1-201ENST00000526271 PPP4R3CPQ6ZMV5 832 aa15.84■□□□□ 0.13
CPSF1-201ENST00000526271 MAEAQ7L5Y9 396 aa15.84■□□□□ 0.13
CPSF1-201ENST00000526271 GRASPQ7Z6J2 395 aaPredicted RBP15.84■□□□□ 0.13
CPSF1-201ENST00000526271 EXOC8Q8IYI6 725 aa15.84■□□□□ 0.13
CPSF1-201ENST00000526271 ITFG1Q8TB96 612 aa15.84■□□□□ 0.13
CPSF1-201ENST00000526271 COLEC11Q9BWP8 271 aa15.84■□□□□ 0.13
CPSF1-201ENST00000526271 PDZD7Q9H5P4 517 aa15.84■□□□□ 0.13
CPSF1-201ENST00000526271 ARHGEF3Q9NR81 526 aa15.84■□□□□ 0.13
CPSF1-201ENST00000526271 MTF2Q9Y483 593 aaPredicted RBP15.84■□□□□ 0.13
CPSF1-201ENST00000526271 F5P12259 2224 aa15.84■□□□□ 0.13
CPSF1-201ENST00000526271 ZMYM2Q9UBW7 1377 aa15.84■□□□□ 0.13
CPSF1-201ENST00000526271 JAK2O60674 1132 aa15.83■□□□□ 0.12
CPSF1-201ENST00000526271 USO1O60763 962 aaKnown RBP15.83■□□□□ 0.12
CPSF1-201ENST00000526271 SP9P0CG40 484 aa15.83■□□□□ 0.12
CPSF1-201ENST00000526271 ID4P47928 161 aa15.83■□□□□ 0.12
CPSF1-201ENST00000526271 HSP90AA2PQ14568 343 aaPredicted RBP15.83■□□□□ 0.12
CPSF1-201ENST00000526271 SLC27A1Q6PCB7 646 aa15.83■□□□□ 0.12
CPSF1-201ENST00000526271 DCLK2Q8N568 766 aa15.83■□□□□ 0.12
CPSF1-201ENST00000526271 NSUN7Q8NE18 718 aaKnown RBP15.83■□□□□ 0.12
CPSF1-201ENST00000526271 DDX23Q9BUQ8 820 aaKnown RBP15.83■□□□□ 0.12
CPSF1-201ENST00000526271 CCDC113Q9H0I3 377 aa15.83■□□□□ 0.12
CPSF1-201ENST00000526271 TTC12Q9H892 705 aaPredicted RBP15.83■□□□□ 0.12
CPSF1-201ENST00000526271 POLD4Q9HCU8 107 aa15.83■□□□□ 0.12
CPSF1-201ENST00000526271 HCFC1R1Q9NWW0 138 aa15.83■□□□□ 0.12
CPSF1-201ENST00000526271 SNTG2Q9NY99 539 aa15.83■□□□□ 0.12
CPSF1-201ENST00000526271 SSX2IPQ9Y2D8 614 aa15.83■□□□□ 0.12
CPSF1-201ENST00000526271 MED19A0JLT2 244 aaPredicted RBP15.82■□□□□ 0.12
CPSF1-201ENST00000526271 KRT2P35908 639 aa15.82■□□□□ 0.12
CPSF1-201ENST00000526271 TXKP42681 527 aa15.82■□□□□ 0.12
CPSF1-201ENST00000526271 FOSBP53539 338 aa15.82■□□□□ 0.12
CPSF1-201ENST00000526271 STARD6P59095 220 aa15.82■□□□□ 0.12
CPSF1-201ENST00000526271 TUSC3Q13454 348 aa15.82■□□□□ 0.12
CPSF1-201ENST00000526271 FAM187BQ17R55 369 aa15.82■□□□□ 0.12
CPSF1-201ENST00000526271 CPLX2Q6PUV4 134 aaKnown RBP15.82■□□□□ 0.12
CPSF1-201ENST00000526271 SLFN12Q8IYM2 578 aa15.82■□□□□ 0.12
CPSF1-201ENST00000526271 SUMF1Q8NBK3 374 aa15.82■□□□□ 0.12
CPSF1-201ENST00000526271 C3orf58Q8NDZ4 430 aa15.82■□□□□ 0.12
CPSF1-201ENST00000526271 PIK3R5Q8WYR1 880 aa15.82■□□□□ 0.12
CPSF1-201ENST00000526271 STAMQ92783 540 aa15.82■□□□□ 0.12
CPSF1-201ENST00000526271 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP15.82■□□□□ 0.12
CPSF1-201ENST00000526271 PARP2Q9UGN5 583 aa15.82■□□□□ 0.12
CPSF1-201ENST00000526271 PCDHA12Q9UN75 941 aa15.82■□□□□ 0.12
CPSF1-201ENST00000526271 EPG5Q9HCE0 2579 aa15.82■□□□□ 0.12
CPSF1-201ENST00000526271 CCL16O15467 120 aa15.81■□□□□ 0.12
CPSF1-201ENST00000526271 MEFVO15553 781 aaPredicted RBP15.81■□□□□ 0.12
CPSF1-201ENST00000526271 RECQL4O94761 1208 aa15.81■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms