RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 PYM1Q9BRP8 204 aaKnown RBP11.17□□□□□ -0.62
VPS28-204ENST00000526054 RUSC1Q9BVN2 902 aa11.17□□□□□ -0.62
VPS28-204ENST00000526054 MINDY3Q9H8M7 445 aa11.17□□□□□ -0.62
VPS28-204ENST00000526054 SFXN1Q9H9B4 322 aa11.17□□□□□ -0.62
VPS28-204ENST00000526054 BLOC1S4Q9NUP1 217 aa11.17□□□□□ -0.62
VPS28-204ENST00000526054 STK39Q9UEW8 545 aa11.17□□□□□ -0.62
VPS28-204ENST00000526054 C2orf16Q68DN1 1984 aa11.17□□□□□ -0.62
VPS28-204ENST00000526054 KRT18P05783 430 aaKnown RBP11.16□□□□□ -0.62
VPS28-204ENST00000526054 GLRA2P23416 452 aa11.16□□□□□ -0.62
VPS28-204ENST00000526054 GUCY2CP25092 1073 aa11.16□□□□□ -0.62
VPS28-204ENST00000526054 TCF15Q12870 199 aa11.16□□□□□ -0.62
VPS28-204ENST00000526054 CAPSQ13938 189 aa11.16□□□□□ -0.62
VPS28-204ENST00000526054 DHX8Q14562 1220 aaKnown RBP11.16□□□□□ -0.62
VPS28-204ENST00000526054 ATAT1Q5SQI0 421 aa11.16□□□□□ -0.62
VPS28-204ENST00000526054 RESP18Q5W5W9 173 aa11.16□□□□□ -0.62
VPS28-204ENST00000526054 ADALQ6DHV7 355 aa11.16□□□□□ -0.62
VPS28-204ENST00000526054 SHC4Q6S5L8 630 aa11.16□□□□□ -0.62
VPS28-204ENST00000526054 AGMOQ6ZNB7 445 aa11.16□□□□□ -0.62
VPS28-204ENST00000526054 C1orf186Q6ZWK4 172 aa11.16□□□□□ -0.62
VPS28-204ENST00000526054 PPFIBP1Q86W92 1011 aa11.16□□□□□ -0.62
VPS28-204ENST00000526054 GPBP1Q86WP2 473 aa11.16□□□□□ -0.62
VPS28-204ENST00000526054 ZNF280BQ86YH2 543 aa11.16□□□□□ -0.62
VPS28-204ENST00000526054 ZBTB8OSQ8IWT0 167 aa11.16□□□□□ -0.62
VPS28-204ENST00000526054 UBALD2Q8IYN6 164 aa11.16□□□□□ -0.62
VPS28-204ENST00000526054 ASAP3Q8TDY4 903 aa11.16□□□□□ -0.62
VPS28-204ENST00000526054 SLC22A17Q8WUG5 538 aa11.16□□□□□ -0.62
VPS28-204ENST00000526054 PHOX2BQ99453 314 aa11.16□□□□□ -0.62
VPS28-204ENST00000526054 TMEM175Q9BSA9 504 aa11.16□□□□□ -0.62
VPS28-204ENST00000526054 VN1R3Q9BXE9 311 aa11.16□□□□□ -0.62
VPS28-204ENST00000526054 EMILIN2Q9BXX0 1053 aa11.16□□□□□ -0.62
VPS28-204ENST00000526054 GPRC5CQ9NQ84 441 aa11.16□□□□□ -0.62
VPS28-204ENST00000526054 KANSL3Q9P2N6 904 aa11.16□□□□□ -0.62
VPS28-204ENST00000526054 PLXNA3P51805 1871 aa11.16□□□□□ -0.62
VPS28-204ENST00000526054 LRRIQ4A6NIV6 560 aa11.15□□□□□ -0.62
VPS28-204ENST00000526054 HIP1RO75146 1068 aa11.15□□□□□ -0.62
VPS28-204ENST00000526054 DDHD2O94830 711 aa11.15□□□□□ -0.62
VPS28-204ENST00000526054 PDGFBP01127 241 aaPredicted RBP11.15□□□□□ -0.62
VPS28-204ENST00000526054 POMCP01189 267 aa11.15□□□□□ -0.62
VPS28-204ENST00000526054 URODP06132 367 aa11.15□□□□□ -0.62
VPS28-204ENST00000526054 HOXA11P31270 313 aaPredicted RBP11.15□□□□□ -0.62
VPS28-204ENST00000526054 NAMPTP43490 491 aa11.15□□□□□ -0.62
VPS28-204ENST00000526054 AFF1P51825 1210 aaKnown RBP11.15□□□□□ -0.62
VPS28-204ENST00000526054 PTENP60484 403 aa11.15□□□□□ -0.62
VPS28-204ENST00000526054 POU5F1BQ06416 359 aa11.15□□□□□ -0.62
VPS28-204ENST00000526054 DMP1Q13316 513 aaPredicted RBP11.15□□□□□ -0.62
VPS28-204ENST00000526054 MCM6Q14566 821 aa11.15□□□□□ -0.62
VPS28-204ENST00000526054 PCBP1Q15365 356 aaKnown RBP eCLIP11.15□□□□□ -0.62
VPS28-204ENST00000526054 UBXN11Q5T124 520 aa11.15□□□□□ -0.62
VPS28-204ENST00000526054 KANK3Q6NY19 840 aa11.15□□□□□ -0.62
VPS28-204ENST00000526054 TMC5Q6UXY8 1006 aa11.15□□□□□ -0.62
VPS28-204ENST00000526054 SV2BQ7L1I2 683 aa11.15□□□□□ -0.62
VPS28-204ENST00000526054 MRPL10Q7Z7H8 261 aaKnown RBP11.15□□□□□ -0.62
VPS28-204ENST00000526054 IFNLR1Q8IU57 520 aaPredicted RBP11.15□□□□□ -0.62
VPS28-204ENST00000526054 PDILTQ8N807 584 aa11.15□□□□□ -0.62
VPS28-204ENST00000526054 IQUBQ8NA54 791 aa11.15□□□□□ -0.62
VPS28-204ENST00000526054 CNNM3Q8NE01 707 aa11.15□□□□□ -0.62
VPS28-204ENST00000526054 DEPTORQ8TB45 409 aa11.15□□□□□ -0.62
VPS28-204ENST00000526054 NFKBIZQ9BYH8 718 aa11.15□□□□□ -0.62
VPS28-204ENST00000526054 C2orf40Q9H1Z8 148 aa11.15□□□□□ -0.62
VPS28-204ENST00000526054 CUEDC2Q9H467 287 aa11.15□□□□□ -0.62
VPS28-204ENST00000526054 C17orf75Q9HAS0 396 aa11.15□□□□□ -0.62
VPS28-204ENST00000526054 KCNG1Q9UIX4 513 aa11.15□□□□□ -0.62
VPS28-204ENST00000526054 USTQ9Y2C2 406 aa11.15□□□□□ -0.62
VPS28-204ENST00000526054 USP34Q70CQ2 3546 aa11.15□□□□□ -0.62
VPS28-204ENST00000526054 MYO10Q9HD67 2058 aa11.15□□□□□ -0.63
VPS28-204ENST00000526054 A0A1W2PQ27 194 aa11.14□□□□□ -0.63
VPS28-204ENST00000526054 A0A1W2PQ64 194 aa11.14□□□□□ -0.63
VPS28-204ENST00000526054 A0A1W2PQD8 194 aa11.14□□□□□ -0.63
VPS28-204ENST00000526054 GOLGA6L4A6NEF3 574 aa11.14□□□□□ -0.63
VPS28-204ENST00000526054 INO80B-WBP1J3KQ70 363 aa11.14□□□□□ -0.63
VPS28-204ENST00000526054 NRP1O14786 923 aa11.14□□□□□ -0.63
VPS28-204ENST00000526054 TSPAN1O60635 241 aa11.14□□□□□ -0.63
VPS28-204ENST00000526054 TBCAO75347 108 aaKnown RBP11.14□□□□□ -0.63
VPS28-204ENST00000526054 FAM13AO94988 1023 aa11.14□□□□□ -0.63
VPS28-204ENST00000526054 ASGR2P07307 311 aa11.14□□□□□ -0.63
VPS28-204ENST00000526054 CNPP09543 421 aaKnown RBP11.14□□□□□ -0.63
VPS28-204ENST00000526054 ITGA4P13612 1032 aa11.14□□□□□ -0.63
VPS28-204ENST00000526054 CMA1P23946 247 aa11.14□□□□□ -0.63
VPS28-204ENST00000526054 KLRC2P26717 231 aa11.14□□□□□ -0.63
VPS28-204ENST00000526054 AVPR2P30518 371 aa11.14□□□□□ -0.63
VPS28-204ENST00000526054 MLH1P40692 756 aa11.14□□□□□ -0.63
VPS28-204ENST00000526054 CLCN4P51793 760 aa11.14□□□□□ -0.63
VPS28-204ENST00000526054 CDCA2Q69YH5 1023 aaPredicted RBP11.14□□□□□ -0.63
VPS28-204ENST00000526054 NOTUMQ6P988 496 aa11.14□□□□□ -0.63
VPS28-204ENST00000526054 CCDC149Q6ZUS6 474 aa11.14□□□□□ -0.63
VPS28-204ENST00000526054 ZDHHC14Q8IZN3 488 aa11.14□□□□□ -0.63
VPS28-204ENST00000526054 PLCD3Q8N3E9 789 aa11.14□□□□□ -0.63
VPS28-204ENST00000526054 LRRC15Q8TF66 581 aa11.14□□□□□ -0.63
VPS28-204ENST00000526054 BSNDQ8WZ55 320 aa11.14□□□□□ -0.63
VPS28-204ENST00000526054 DHX58Q96C10 678 aa11.14□□□□□ -0.63
VPS28-204ENST00000526054 CCDC51Q96ER9 411 aa11.14□□□□□ -0.63
VPS28-204ENST00000526054 PANK2Q9BZ23 570 aa11.14□□□□□ -0.63
VPS28-204ENST00000526054 LRRC27Q9C0I9 530 aa11.14□□□□□ -0.63
VPS28-204ENST00000526054 TNMDQ9H2S6 317 aa11.14□□□□□ -0.63
VPS28-204ENST00000526054 SMOC2Q9H3U7 446 aa11.14□□□□□ -0.63
VPS28-204ENST00000526054 MAGEF1Q9HAY2 307 aa11.14□□□□□ -0.63
VPS28-204ENST00000526054 GDPD2Q9HCC8 539 aa11.14□□□□□ -0.63
VPS28-204ENST00000526054 UBN1Q9NPG3 1134 aa11.14□□□□□ -0.63
VPS28-204ENST00000526054 MRPL17Q9NRX2 175 aaKnown RBP11.14□□□□□ -0.63
VPS28-204ENST00000526054 FAM86C1Q9NVL1 165 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms