RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 PCDHA13Q9Y5I0 950 aa5.78□□□□□ -1.48
CD44-220ENST00000525688 PRXQ9BXM0 1461 aa5.77□□□□□ -1.49
CD44-220ENST00000525688 EEA1Q15075 1411 aa5.77□□□□□ -1.49
CD44-220ENST00000525688 A0A088AWK7 358 aa5.77□□□□□ -1.49
CD44-220ENST00000525688 SH3D21A4FU49 640 aa5.77□□□□□ -1.49
CD44-220ENST00000525688 C2orf78A6NCI8 922 aa5.77□□□□□ -1.49
CD44-220ENST00000525688 ETV2O00321 342 aaPredicted RBP5.77□□□□□ -1.49
CD44-220ENST00000525688 GASTP01350 101 aa5.77□□□□□ -1.49
CD44-220ENST00000525688 ECHS1P30084 290 aa5.77□□□□□ -1.49
CD44-220ENST00000525688 MAN1A1P33908 653 aa5.77□□□□□ -1.49
CD44-220ENST00000525688 MAP2K6P52564 334 aa5.77□□□□□ -1.49
CD44-220ENST00000525688 HK3P52790 923 aa5.77□□□□□ -1.49
CD44-220ENST00000525688 CACNB3P54284 484 aa5.77□□□□□ -1.49
CD44-220ENST00000525688 GJA9P57773 515 aa5.77□□□□□ -1.49
CD44-220ENST00000525688 LMOD3Q0VAK6 560 aa5.77□□□□□ -1.49
CD44-220ENST00000525688 MESP2Q0VG99 397 aa5.77□□□□□ -1.49
CD44-220ENST00000525688 LLGL1Q15334 1064 aa5.77□□□□□ -1.49
CD44-220ENST00000525688 VWA3BQ502W6 1294 aa5.77□□□□□ -1.49
CD44-220ENST00000525688 LARP4Q71RC2 724 aaKnown RBP eCLIP5.77□□□□□ -1.49
CD44-220ENST00000525688 RTKN2Q8IZC4 609 aa5.77□□□□□ -1.49
CD44-220ENST00000525688 Q8N3U1 123 aa5.77□□□□□ -1.49
CD44-220ENST00000525688 PLA2G15Q8NCC3 412 aa5.77□□□□□ -1.49
CD44-220ENST00000525688 KLHDC4Q8TBB5 520 aa5.77□□□□□ -1.49
CD44-220ENST00000525688 KAT5Q92993 513 aa5.77□□□□□ -1.49
CD44-220ENST00000525688 RGMAQ96B86 450 aa5.77□□□□□ -1.49
CD44-220ENST00000525688 CDK5RAP3Q96JB5 506 aa5.77□□□□□ -1.49
CD44-220ENST00000525688 MRGPRX4Q96LA9 322 aa5.77□□□□□ -1.49
CD44-220ENST00000525688 DMRTA2Q96SC8 542 aa5.77□□□□□ -1.49
CD44-220ENST00000525688 STRBPQ96SI9 672 aaKnown RBP5.77□□□□□ -1.49
CD44-220ENST00000525688 CARD11Q9BXL7 1154 aa5.77□□□□□ -1.49
CD44-220ENST00000525688 B3GNT5Q9BYG0 378 aa5.77□□□□□ -1.49
CD44-220ENST00000525688 TMX4Q9H1E5 349 aaPredicted RBP5.77□□□□□ -1.49
CD44-220ENST00000525688 C14orf93Q9H972 538 aaKnown RBP5.77□□□□□ -1.49
CD44-220ENST00000525688 BCO1Q9HAY6 547 aa5.77□□□□□ -1.49
CD44-220ENST00000525688 CASS4Q9NQ75 786 aa5.77□□□□□ -1.49
CD44-220ENST00000525688 SCINQ9Y6U3 715 aa5.77□□□□□ -1.49
CD44-220ENST00000525688 PRG4Q92954 1404 aaPredicted RBP5.76□□□□□ -1.49
CD44-220ENST00000525688 CAPN8A6NHC0 703 aa5.76□□□□□ -1.49
CD44-220ENST00000525688 DDX3XO00571 662 aaKnown RBP eCLIP5.76□□□□□ -1.49
CD44-220ENST00000525688 PMM2O15305 246 aa5.76□□□□□ -1.49
CD44-220ENST00000525688 MTSS1O43312 755 aa5.76□□□□□ -1.49
CD44-220ENST00000525688 PRAMEF4O60810 478 aa5.76□□□□□ -1.49
CD44-220ENST00000525688 IFIT2P09913 472 aaKnown RBP5.76□□□□□ -1.49
CD44-220ENST00000525688 SLC5A1P13866 664 aa5.76□□□□□ -1.49
CD44-220ENST00000525688 TAL1P17542 331 aaPredicted RBP5.76□□□□□ -1.49
CD44-220ENST00000525688 ADSLP30566 484 aaPredicted RBP5.76□□□□□ -1.49
CD44-220ENST00000525688 KIR2DL3P43628 341 aa5.76□□□□□ -1.49
CD44-220ENST00000525688 HTR3AP46098 478 aa5.76□□□□□ -1.49
CD44-220ENST00000525688 NEK3P51956 506 aa5.76□□□□□ -1.49
CD44-220ENST00000525688 GPSM2P81274 684 aa5.76□□□□□ -1.49
CD44-220ENST00000525688 MORC3Q14149 939 aa5.76□□□□□ -1.49
CD44-220ENST00000525688 PCOLCEQ15113 449 aa5.76□□□□□ -1.49
CD44-220ENST00000525688 CNKSR3Q6P9H4 555 aa5.76□□□□□ -1.49
CD44-220ENST00000525688 DARS2Q6PI48 645 aaKnown RBP5.76□□□□□ -1.49
CD44-220ENST00000525688 RINLQ6ZS11 566 aa5.76□□□□□ -1.49
CD44-220ENST00000525688 CCDC149Q6ZUS6 474 aa5.76□□□□□ -1.49
CD44-220ENST00000525688 RHOT1Q8IXI2 618 aa5.76□□□□□ -1.49
CD44-220ENST00000525688 MSL3Q8N5Y2 521 aaKnown RBP5.76□□□□□ -1.49
CD44-220ENST00000525688 OR7D4Q8NG98 312 aa5.76□□□□□ -1.49
CD44-220ENST00000525688 ZNF480Q8WV37 535 aa5.76□□□□□ -1.49
CD44-220ENST00000525688 NTMQ9P121 344 aa5.76□□□□□ -1.49
CD44-220ENST00000525688 CALCOCO1Q9P1Z2 691 aa5.76□□□□□ -1.49
CD44-220ENST00000525688 TRPS1Q9UHF7 1281 aa5.76□□□□□ -1.49
CD44-220ENST00000525688 ADAM29Q9UKF5 820 aa5.76□□□□□ -1.49
CD44-220ENST00000525688 FAM50BQ9Y247 325 aa5.76□□□□□ -1.49
CD44-220ENST00000525688 C9orf118A6NHY6 69 aa5.75□□□□□ -1.49
CD44-220ENST00000525688 GOLIM4O00461 696 aa5.75□□□□□ -1.49
CD44-220ENST00000525688 ALDH1A2O94788 518 aa5.75□□□□□ -1.49
CD44-220ENST00000525688 ARIH2O95376 493 aa5.75□□□□□ -1.49
CD44-220ENST00000525688 FTLP02792 175 aaPredicted RBP5.75□□□□□ -1.49
CD44-220ENST00000525688 PTMAP06454 111 aaKnown RBP5.75□□□□□ -1.49
CD44-220ENST00000525688 CRHR1P34998 444 aa5.75□□□□□ -1.49
CD44-220ENST00000525688 COPB2P35606 906 aa5.75□□□□□ -1.49
CD44-220ENST00000525688 SREBF1P36956 1147 aa5.75□□□□□ -1.49
CD44-220ENST00000525688 MRE11P49959 708 aa5.75□□□□□ -1.49
CD44-220ENST00000525688 MEOX1P50221 254 aa5.75□□□□□ -1.49
CD44-220ENST00000525688 NKX6-1P78426 367 aaPredicted RBP5.75□□□□□ -1.49
CD44-220ENST00000525688 TARDBPQ13148 414 aaKnown RBP eCLIP5.75□□□□□ -1.49
CD44-220ENST00000525688 NOGQ13253 232 aa5.75□□□□□ -1.49
CD44-220ENST00000525688 ADAM15Q13444 863 aa5.75□□□□□ -1.49
CD44-220ENST00000525688 RAB39AQ14964 217 aa5.75□□□□□ -1.49
CD44-220ENST00000525688 KIAA0753Q2KHM9 967 aa5.75□□□□□ -1.49
CD44-220ENST00000525688 FAM26FQ5R3K3 315 aa5.75□□□□□ -1.49
CD44-220ENST00000525688 RNF220Q5VTB9 566 aa5.75□□□□□ -1.49
CD44-220ENST00000525688 MAEAQ7L5Y9 396 aa5.75□□□□□ -1.49
CD44-220ENST00000525688 DAAM2Q86T65 1068 aa5.75□□□□□ -1.49
CD44-220ENST00000525688 KRT78Q8N1N4 520 aa5.75□□□□□ -1.49
CD44-220ENST00000525688 SDR16C5Q8N3Y7 309 aa5.75□□□□□ -1.49
CD44-220ENST00000525688 KLHL36Q8N4N3 616 aa5.75□□□□□ -1.49
CD44-220ENST00000525688 LILRA3Q8N6C8 439 aaPredicted RBP5.75□□□□□ -1.49
CD44-220ENST00000525688 C3orf20Q8ND61 904 aa5.75□□□□□ -1.49
CD44-220ENST00000525688 PPM1EQ8WY54 764 aa5.75□□□□□ -1.49
CD44-220ENST00000525688 CLPTM1LQ96KA5 538 aa5.75□□□□□ -1.49
CD44-220ENST00000525688 FAM167AQ96KS9 214 aa5.75□□□□□ -1.49
CD44-220ENST00000525688 PWWP2AQ96N64 755 aa5.75□□□□□ -1.49
CD44-220ENST00000525688 SAMD11Q96NU1 681 aa5.75□□□□□ -1.49
CD44-220ENST00000525688 ARPC5LQ9BPX5 153 aa5.75□□□□□ -1.49
CD44-220ENST00000525688 SPATA25Q9BR10 227 aa5.75□□□□□ -1.49
CD44-220ENST00000525688 PAGR1Q9BTK6 254 aa5.75□□□□□ -1.49
CD44-220ENST00000525688 NAA15Q9BXJ9 866 aaKnown RBP5.75□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms